Site Allele1 Total-pop Allele2 Total-pop 000037 T 1 A 171 000050 T 73 G 97 000177 C 1 T 179 000268 G 1 C 179 000656 C 2 G 106 000721 C 15 T 81 000743 C 10 T 92 000777 A 1 G 97 000909 A 10 G 72 001701 - 10 + 132 001779 G 43 C 87 001986 T 4 C 134 002024 - 1 + 139 002179 A 10 G 136 013193 G 1 C 165 013295 A 25 G 139 013426 C 2 G 164 013833 + 44 - 94 013981 A 22 C 122 014040 A 4 C 146 014144 C 2 T 152 014280 C 2 T 152 023442 C 24 T 146 023665 G 24 A 148 023823 G 29 T 143 024000 G 22 C 148 024015 T 21 C 149 024070 C 1 A 171 030791 T 34 G 134 030962 C 52 T 116 031143 T 23 C 145 031151 + 1 - 159 031161 A 1 T 167 031740 A 1 G 177 031918 A 5 G 173 032265 T 1 C 173 032859 A 1 G 179 032934 T 2 C 176 032976 A 1 G 175 033081 A 1 G 177 033343 T 1 C 149 033595 A 1 G 151 033958 A 44 G 132 034072 T 29 A 147 034181 - 7 + 163 034229 T 39 C 133 034241 G 1 A 173 034534 C 1 T 175 043448 A 1 G 119 043628 T 54 C 124 043842 G 48 T 128 044024 A 44 G 130 044089 - 1 + 173 044124 G 1 A 173 044498 + 46 - 124 044569 G 1 A 167 044737 C 1 A 167 044739 G 4 C 164 044752 G 1 C 167 044936 T 7 C 157 045035 A 38 G 128 045046 A 1 G 151 050723 G 1 A 157 050827 C 62 G 92 050842 A 31 G 127 050926 A 1 G 153 051050 A 21 G 131 051140 A 64 T 92 051487 A 32 G 128 051957 T 3 C 173 052179 T 1 C 159 052576 G 40 A 124 052665 G 21 A 73 052899 + 2 - 134 052909 T 35 A 101 053096 A 26 G 116 053128 C 26 T 114 053138 T 20 C 120 053234 A 25 T 105 064633 G 72 A 84 064922 T 1 C 157 065201 T 1 A 139 065205 G 4 T 136 065434 T 9 G 167 065502 A 5 G 169 065686 T 5 C 169 065755 T 1 C 175 065915 T 5 C 149 065967 C 1 T 153 065981 - 1 + 155 066100 A 31 G 131 066127 - 3 + 165 066166 A 6 C 162 066178 T 6 G 160 066202 C 6 T 162 066279 A 2 G 164 066288 T 3 C 123 073000 A 2 G 176 073021 A 3 G 173 073470 A 6 G 170 073619 A 1 G 175 073688 G 1 A 175 073782 C 82 G 90 073864 A 49 T 125 074139 G 1 A 173 074216 C 3 T 173 074464 A 1 G 159 074655 T 3 C 159 074714 G 3 A 157 074791 G 2 T 154 074796 T 73 A 79 074850 A 1 G 155 074920 C 2 T 154 075085 C 8 T 164 075141 A 6 G 168 075394 A 1 T 177 075468 T 1 C 177 075469 C 1 T 177 075679 A 1 G 173 075770 T 1 C 167 076506 T 14 G 72 076778 C 1 G 173 076796 T 1 C 171 076802 A 46 G 130 077110 C 29 T 145 077132 C 83 T 91 077223 T 1 C 175 077252 T 4 C 172 077313 A 81 T 95 077391 A 1 G 175 077520 C 1 A 179 077925 T 31 C 137 078237 C 1 G 175 078735 C 80 G 94 078854 T 1 C 175 078957 T 1 C 175 078977 G 1 A 175 079124 T 48 A 122 082701 T 33 C 135 082716 A 76 G 92 082852 * 082945 T 1 C 167 083064 - 34 + 136 083192 G 6 C 164 083209 A 3 G 167 083283 A 1 G 169 083360 C 1 A 169 083507 C 3 T 171 083768 T 1 C 175 083856 A 5 G 165 084034 T 3 C 159 084128 C 1 T 161 085238 T 3 G 175 085818 + 87 - 89 086312 G 28 A 140 086515 G 2 A 170 086535 T 36 C 116 086547 A 1 G 165 091143 T 1 C 155 091150 T 4 C 152 091541 G 1 A 175 091554 G 85 A 91 091568 A 1 G 175 091582 T 2 C 174 091653 A 3 G 175 091681 T 3 C 175 095560 T 1 C 163 095749 A 3 C 173 095771 A 61 G 115 096416 A 2 G 140 096759 A 55 G 113 096835 A 1 G 167 097019 A 76 G 88 097390 A 5 G 175 097426 A 11 G 167 097489 - 1 + 177 097532 T 2 C 176 097568 G 12 A 164 097644 G 1 C 175 097646 A 1 G 175 097651 T 1 C 175 097927 A 1 G 173 097981 A 1 G 179 098089 A 6 G 174 098652 A 2 G 174 098714 T 5 A 169 099089 G 58 A 64 099270 C 1 A 165 099319 G 4 A 170 099752 T 1 C 155 099802 G 1 A 135 099831 T 46 C 80 100059 G 1 A 151 100424 C 1 T 75 100507 - 43 + 79 100537 A 1 C 133 100776 A 16 G 128 100840 G 58 C 104 100965 A 51 C 97 100973 + 5 - 135 101429 G 2 A 160 101433 C 1 T 161 101466 T 5 G 161 101498 A 47 G 113 101564 C 1 T 155 101625 T 1 C 153 101785 T 1 G 131 101970 T 1 C 127 102017 T 1 G 125 102040 A 17 G 107 102105 G 34 A 80 102160 T 3 C 81 102698 T 2 C 106 102703 A 53 G 69 102779 G 1 T 135 102799 T 3 C 133 102908 - 50 + 88 103357 C 3 A 161 103637 T 1 C 157 103754 A 63 G 101 103760 T 7 A 159 103850 T 27 C 145 103990 C 1 T 175 104165 T 3 C 153 104238 A 10 C 146 104391 T 1 C 175 104580 T 1 C 175 104730 C 1 T 169 104975 G 1 A 129 105012 A 42 G 90 105125 T 3 C 131 105157 T 3 C 131 105382 C 49 T 85 105505 A 46 C 104 105671 G 55 A 113 105775 T 1 C 165 105779 T 12 C 154 105829 A 1 G 165 105874 A 1 G 165 105918 G 3 T 153 106226 A 13 G 155 109383 A 15 G 157 109461 A 1 G 169 109474 A 55 G 115 109530 A 1 C 169 109625 T 1 A 173 109642 G 1 A 171 109686 C 5 T 167 109819 A 54 T 118 109861 C 3 T 171 110046 A 1 G 175 110056 T 2 C 176 110672 T 15 C 165 110686 A 2 G 178 111232 A 1 G 175 111414 C 8 T 166 111418 G 11 A 165 114620 G 39 C 85 114694 + 1 - 163 114774 G 14 A 158 114886 G 14 A 160 114927 T 14 C 160 114976 G 1 A 173 115059 C 1 T 173 115143 T 1 A 171 115343 T 14 C 150 115409 A 14 G 150 115501 G 54 T 104 115861 G 1 C 175 115963 G 7 A 169 116148 A 21 G 155 116277 T 67 C 95 116409 G 64 A 88 116537 T 2 C 166 116630 C 8 A 160 116649 C 6 A 164 116767 C 54 A 102 116831 C 10 T 154 117272 G 16 A 162 117406 C 1 T 177 117409 C 1 T 177 117439 T 2 A 176 117580 A 1 G 171 119137 C 2 T 136 119472 G 33 T 117 119517 C 1 T 153 120038 C 61 G 99 120094 T 1 C 155 121128 G 1 T 169 121372 T 1 C 159 121392 T 2 G 154 121865 C 4 G 138 121945 T 4 C 148 128978 T 4 C 174 129133 G 1 A 179 129208 G 48 A 130 129230 C 1 T 179 129272 G 1 A 179 129314 G 1 A 179 129412 A 88 G 92 129595 A 2 G 178 129668 T 1 C 173 130980 T 4 C 172 131018 A 1 G 179 131202 G 1 A 165 131249 C 40 G 126 131311 G 3 C 165 131478 C 2 G 170 131520 T 1 C 173 131633 T 34 C 132 132462 T 3 C 159 132511 A 4 G 162 132596 C 2 G 160 132868 A 1 C 169 133022 T 63 C 89 133738 A 1 G 139 136148 T 1 C 173 136283 C 4 T 172 136722 A 54 G 106 136755 A 18 G 112 137322 T 1 C 141 137402 A 2 G 136 137630 C 1 T 161 137752 T 3 C 155 137866 A 69 C 89 137937 T 2 A 172 138072 A 2 G 166 138206 A 2 T 168 138225 C 1 T 171 138297 T 27 C 147 138332 T 1 C 173 138835 C 76 T 96 138937 C 41 G 131 139178 A 1 G 153 139215 A 2 G 154 139434 A 1 G 147 139454 - 1 + 145 139508 G 2 A 144 139592 A 1 G 149 139799 A 37 G 141 139960 - 3 + 175 140202 T 1 C 165 140674 A 38 G 134 140702 A 1 G 171 140720 C 35 G 137 140724 - 2 + 174 140857 G 2 A 178 141080 G 60 C 86 141443 - 2 + 144 141723 T 1 C 165 141770 G 2 A 140 141794 A 40 G 92 141802 A 2 C 136 142626 T 1 C 107 142733 A 2 C 102 142739 T 2 G 130 142851 C 2 G 168 142860 C 1 T 169 142999 T 1 C 169 143060 G 4 A 164 143363 A 2 C 178 143544 A 1 C 179 143716 G 3 C 177 143937 G 14 A 166 144008 A 6 G 168 144026 T 39 C 137 144202 G 73 A 101 144236 + 9 - 167 144360 - 1 + 155 144530 A 1 G 119 145029 - 1 + 173 145137 A 1 G 175 145253 A 1 G 163 145334 + 5 - 153 145439 T 2 C 144 145658 A 1 G 131 146132 T 28 C 102 146183 T 1 C 135 146419 C 38 G 100 146586 + 2 - 150 146707 T 1 C 137 146725 A 1 G 141 146935 T 2 G 128 147268 T 3 C 145 147269 A 1 G 147 147318 C 45 G 89 147382 C 3 T 147 147541 A 34 G 88 148445 T 1 C 129 148713 T 46 C 122 148745 A 2 G 166 148752 A 1 G 167 148804 T 2 C 166 148939 A 1 T 153 149347 T 1 G 111 149494 A 3 T 161 149808 A 1 G 165 149891 - 3 + 165 150124 G 6 A 172 150184 G 7 A 171 150317 C 6 A 174 150324 G 6 A 174 150382 T 1 A 179 150545 G 1 A 177 150678 G 38 T 138 150769 T 1 G 175 150771 - 1 + 177 150812 T 6 G 172 150827 A 2 G 176 151256 A 1 G 137 152083 A 1 G 143 Note: Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 001701: a 002024: c 013833: A 031151: T 034181: AA 044089: A 044498: A 052899: A 065981: ct 066127: ca 083064: CTTTTAC 085818: G 097489: gg 100507: TACTCATTCATTCATTCATT 100973: A 102908: A 114694: A 139454: TATAAAATAAAA 139960: cttg 140724: at 141443: T 144236: t 144360: a 145029: TTGC 145334: AG 146586: C 149891: C 150771: ttt Tri-allelic sites: Site Allele1 Total-pop Allele2 Total-pop Allele3 Total-pop 082852 A 1 G 48 C 115