Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000135 00000 ------------ - 0.90 0.92 0.73 0.95 0.81 0.85 + 0.10 0.08 0.27 0.05 0.19 0.15 0000 --- --- --- --- 000291 00000 ------------ G 0.87 0.79 0.59 0.91 0.79 0.78 A 0.13 0.21 0.41 0.09 0.21 0.22 0000 --- --- --- --- 000464 00000 ------------ G 0.97 0.96 1.00 1.00 1.00 0.99 C 0.03 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000678 00000 ------------ T 1.00 1.00 1.00 1.00 0.96 0.99 C 0.00 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- 000969 00000 ------------ C 0.97 0.96 1.00 1.00 1.00 0.99 T 0.03 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001032 00000 ------------ G 0.97 1.00 0.89 1.00 1.00 0.97 T 0.03 0.00 0.11 0.00 0.00 0.03 0000 --- --- --- --- 001078 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001355 00000 ------------ C 0.50 0.46 0.77 0.82 0.83 0.72 G 0.50 0.54 0.23 0.18 0.17 0.28 0000 --- --- --- --- 001458 00000 ------------ - 1.00 1.00 1.00 0.98 1.00 0.99 + 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 001684 00000 ------------ - 0.46 0.42 0.07 0.14 0.09 0.19 + 0.54 0.58 0.93 0.86 0.91 0.81 0000 --- --- --- --- 001750 00013 5' UTR C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001815 00000 ------------ C 1.00 1.00 0.97 0.93 1.00 0.98 T 0.00 0.00 0.03 0.07 0.00 0.02 0000 --- --- --- --- 002034 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 002120 00000 ------------ A 0.42 0.46 0.76 0.82 0.83 0.71 G 0.58 0.54 0.24 0.18 0.17 0.29 0000 --- --- --- --- 002136 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 002450 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 002508 00000 ------------ G 1.00 1.00 1.00 1.00 0.96 0.99 A 0.00 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- 002862 00000 ------------ T 0.58 0.46 0.77 0.82 0.83 0.73 A 0.42 0.54 0.23 0.18 0.17 0.27 0000 --- --- --- --- 003006 00000 ------------ C 0.50 0.46 0.77 0.82 0.83 0.72 A 0.50 0.54 0.23 0.18 0.17 0.28 0000 --- --- --- --- 003277 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 003319 00000 ------------ C 0.46 0.46 0.80 0.82 0.83 0.72 A 0.54 0.54 0.20 0.18 0.17 0.28 0000 --- --- --- --- 003568 00000 ------------ - 0.50 0.46 0.89 0.82 0.85 0.76 + 0.50 0.54 0.11 0.18 0.15 0.24 0000 --- --- --- --- 003606 00000 ------------ G 0.96 1.00 0.89 1.00 1.00 0.97 A 0.04 0.00 0.11 0.00 0.00 0.03 0000 --- --- --- --- 003711 00000 ------------ - 0.00 0.00 0.00 0.00 0.04 0.01 + 1.00 1.00 1.00 1.00 0.96 0.99 0000 --- --- --- --- 003721 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 003981 00000 ------------ C 0.54 0.46 0.76 0.82 0.83 0.72 T 0.46 0.54 0.24 0.18 0.17 0.28 0000 --- --- --- --- 004026 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004114 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004343 00000 ------------ T 0.54 0.46 0.76 0.82 0.83 0.72 C 0.46 0.54 0.24 0.18 0.17 0.28 0000 --- --- --- --- 004432 00000 ------------ C 1.00 1.00 1.00 1.00 0.96 0.99 T 0.00 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- 004433 00000 ------------ G 1.00 1.00 0.95 0.95 1.00 0.98 A 0.00 0.00 0.05 0.05 0.00 0.02 0000 --- --- --- --- 004583 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 004705 00000 ------------ C 1.00 0.92 1.00 1.00 1.00 0.99 G 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004731 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 005199 00000 ------------ C 1.00 0.88 1.00 1.00 1.00 0.98 T 0.00 0.12 0.00 0.00 0.00 0.02 0000 --- --- --- --- 005439 00000 ------------ - 0.81 0.92 1.00 1.00 1.00 0.96 + 0.19 0.08 0.00 0.00 0.00 0.04 0000 --- --- --- --- 005469 00000 ------------ T 0.96 1.00 0.86 1.00 1.00 0.96 C 0.04 0.00 0.14 0.00 0.00 0.04 0000 --- --- --- --- 005546 00000 ------------ - 0.00 0.12 0.02 0.05 0.05 0.04 + 1.00 0.88 0.98 0.95 0.95 0.96 0000 --- --- --- --- 005587 00000 ------------ G 0.96 1.00 0.89 1.00 1.00 0.97 A 0.04 0.00 0.11 0.00 0.00 0.03 0000 --- --- --- --- 005721 00000 ------------ A 0.96 1.00 0.80 1.00 1.00 0.95 G 0.04 0.00 0.20 0.00 0.00 0.05 0000 --- --- --- --- 005744 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 005790 00000 ------------ C 0.88 0.92 1.00 1.00 1.00 0.97 G 0.12 0.08 0.00 0.00 0.00 0.03 0000 --- --- --- --- 006254 00000 ------------ C 1.00 0.88 1.00 1.00 1.00 0.98 T 0.00 0.12 0.00 0.00 0.00 0.02 0000 --- --- --- --- 006361 00000 ------------ G 0.88 0.92 1.00 1.00 1.00 0.97 T 0.12 0.08 0.00 0.00 0.00 0.03 0000 --- --- --- --- 006685 00000 ------------ G 0.96 1.00 0.88 1.00 1.00 0.97 T 0.04 0.00 0.12 0.00 0.00 0.03 0000 --- --- --- --- 007212 00583 SYNON T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0169 AAT AAC ASN(N) ASN(N) 007276 00647 NON-SYN T 1.00 1.00 1.00 1.00 0.97 0.99 A 0.00 0.00 0.00 0.00 0.03 0.01 0191 TGC AGC CYS(C) SER(S) 007389 00760 SYNON T 0.42 0.46 0.77 0.80 0.78 0.67 C 0.58 0.54 0.23 0.20 0.22 0.33 0228 GAT GAC ASP(D) ASP(D) 008191 01562 NON-SYN A 1.00 1.00 0.97 1.00 1.00 0.99 G 0.00 0.00 0.03 0.00 0.00 0.01 0496 AAG GAG LYS(K) GLU(E) 008358 01729 SYNON C 1.00 1.00 0.98 0.93 1.00 0.98 T 0.00 0.00 0.02 0.07 0.00 0.02 0551 AAC AAT ASN(N) ASN(N) 008364 01735 SYNON G 0.90 0.92 1.00 1.00 1.00 0.97 A 0.10 0.08 0.00 0.00 0.00 0.03 0553 AAG AAA LYS(K) LYS(K) 008565 01936 SYNON C 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0620 GGC GGT GLY(G) GLY(G) 008663 02034 3' UTR T 1.00 1.00 1.00 0.97 1.00 0.99 G 0.00 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- 008682 02053 3' UTR - 0.50 0.50 0.22 0.16 0.21 0.30 + 0.50 0.50 0.78 0.84 0.79 0.70 0000 --- --- --- --- 008880 02251 3' UTR G 1.00 1.00 1.00 1.00 0.93 0.98 A 0.00 0.00 0.00 0.00 0.07 0.02 0000 --- --- --- --- 009429 00000 ------------ G 1.00 1.00 1.00 1.00 0.95 0.99 A 0.00 0.00 0.00 0.00 0.05 0.01 0000 --- --- --- --- 009499 00000 ------------ G 0.47 0.41 0.80 0.82 0.83 0.71 C 0.53 0.59 0.20 0.18 0.17 0.29 0000 --- --- --- --- 009794 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 009837 00000 ------------ T 1.00 1.00 0.93 0.98 1.00 0.98 C 0.00 0.00 0.07 0.02 0.00 0.02 0000 --- --- --- --- 010023 00000 ------------ C 1.00 0.95 1.00 1.00 1.00 0.99 T 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 010071 00000 ------------ C 0.46 0.45 0.77 0.82 0.85 0.72 A 0.54 0.55 0.23 0.18 0.15 0.28 0000 --- --- --- --- 010159 00000 ------------ A 0.50 0.41 0.81 0.82 0.84 0.73 G 0.50 0.59 0.19 0.18 0.16 0.27 0000 --- --- --- --- 010272 00000 ------------ - 0.75 0.86 0.93 0.86 0.90 0.87 + 0.25 0.14 0.07 0.14 0.10 0.13 0000 --- --- --- --- 010300 00000 ------------ C 0.50 0.41 0.79 0.82 0.82 0.72 G 0.50 0.59 0.21 0.17 0.18 0.28 0000 --- --- --- --- 010362 00000 ------------ T 1.00 1.00 1.00 1.00 0.95 0.99 C 0.00 0.00 0.00 0.00 0.05 0.01 0000 --- --- --- --- 010363 00000 ------------ - 0.46 0.59 0.19 0.18 0.16 0.27 + 0.54 0.41 0.81 0.82 0.84 0.73 0000 --- --- --- --- 010546 00000 ------------ T 0.50 0.41 0.82 0.84 0.82 0.72 C 0.50 0.59 0.18 0.16 0.17 0.28 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 000135: T 001458: T 001684: GGGGCAAGATCTGATGGTTTTATAAGGGGAAA 003568: C 003711: C 005439: CACCCCTGTCTGCCGTCCCGCCA 005546: T 008682: T 010272: T 010363: T