Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000440 00000 ------------ G 0.89 0.82 1.00 1.00 1.00 0.96 A 0.11 0.18 0.00 0.00 0.00 0.04 0000 --- --- --- --- 000702 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 C 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001740 00000 ------------ A 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 002148 00000 ------------ T 0.93 0.83 1.00 0.98 1.00 0.96 C 0.07 0.17 0.00 0.02 0.00 0.04 0000 --- --- --- --- 002161 00000 ------------ A 1.00 1.00 1.00 1.00 0.92 0.98 T 0.00 0.00 0.00 0.00 0.08 0.02 0000 --- --- --- --- 002214 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 003300 00000 ------------ C 1.00 1.00 1.00 0.93 1.00 0.98 T 0.00 0.00 0.00 0.07 0.00 0.02 0000 --- --- --- --- 003496 00000 ------------ A 0.80 0.96 0.80 0.36 0.22 0.57 G 0.20 0.04 0.20 0.64 0.78 0.43 0000 --- --- --- --- 003962 00000 ------------ C 0.96 0.96 1.00 1.00 1.00 0.99 T 0.04 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004114 00000 ------------ C 0.90 0.83 1.00 1.00 1.00 0.96 T 0.10 0.17 0.00 0.00 0.00 0.04 0000 --- --- --- --- 004635 00000 ------------ G 0.87 0.92 1.00 0.98 1.00 0.96 A 0.13 0.08 0.00 0.02 0.00 0.04 0000 --- --- --- --- 004818 00000 ------------ G 0.87 0.92 1.00 0.98 1.00 0.96 C 0.13 0.08 0.00 0.02 0.00 0.04 0000 --- --- --- --- 004982 00000 ------------ C 1.00 1.00 1.00 0.93 1.00 0.98 T 0.00 0.00 0.00 0.07 0.00 0.02 0000 --- --- --- --- 005112 00000 ------------ A 1.00 1.00 0.98 0.98 1.00 0.99 G 0.00 0.00 0.02 0.02 0.00 0.01 0000 --- --- --- --- 005220 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 005267 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 005573 00000 ------------ C 0.93 0.96 0.80 0.89 0.98 0.90 T 0.07 0.04 0.20 0.11 0.02 0.10 0000 --- --- --- --- 005630 00000 ------------ - 0.03 0.00 0.00 0.00 0.00 0.01 + 0.97 1.00 1.00 1.00 1.00 0.99 0000 --- --- --- --- 005923 00000 ------------ - 0.00 0.00 0.00 0.02 0.00 0.01 + 1.00 1.00 1.00 0.98 1.00 0.99 0000 --- --- --- --- 006044 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 006226 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 006337 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 G 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 006364 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 006485 00000 ------------ A 0.63 0.54 0.79 0.84 0.98 0.79 G 0.37 0.46 0.21 0.16 0.02 0.21 0000 --- --- --- --- 006530 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 007396 00000 ------------ T 1.00 1.00 0.98 1.00 1.00 0.99 C 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 007480 00000 ------------ T 0.93 0.96 0.80 0.89 1.00 0.91 C 0.07 0.04 0.20 0.11 0.00 0.09 0000 --- --- --- --- 007537 00000 ------------ C 1.00 1.00 1.00 1.00 0.93 0.98 A 0.00 0.00 0.00 0.00 0.07 0.02 0000 --- --- --- --- 008311 00000 ------------ G 0.83 0.79 0.41 0.86 0.79 0.73 A 0.17 0.21 0.59 0.14 0.21 0.27 0000 --- --- --- --- 008553 00000 ------------ - 0.00 0.00 0.00 0.02 0.00 0.01 + 1.00 1.00 1.00 0.98 1.00 0.99 0000 --- --- --- --- 008582 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 008628 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 008633 00000 ------------ A 0.93 0.96 1.00 1.00 1.00 0.98 G 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 008670 00000 ------------ C 1.00 1.00 1.00 0.93 1.00 0.98 G 0.00 0.00 0.00 0.07 0.00 0.02 0000 --- --- --- --- 008960 00000 ------------ C 1.00 0.85 1.00 0.98 1.00 0.98 T 0.00 0.15 0.00 0.02 0.00 0.02 0000 --- --- --- --- 009145 00000 ------------ A 1.00 1.00 0.98 1.00 1.00 0.99 T 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 009261 00000 ------------ G 0.73 0.50 0.80 0.84 0.98 0.82 A 0.27 0.50 0.20 0.16 0.02 0.18 0000 --- --- --- --- 009262 00000 ------------ - 0.95 1.00 1.00 1.00 1.00 0.99 + 0.05 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 009361 00000 ------------ C 0.87 0.92 1.00 0.98 1.00 0.96 G 0.13 0.08 0.00 0.02 0.00 0.04 0000 --- --- --- --- 009365 00000 ------------ A 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 009504 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 009575 00000 ------------ G 0.80 0.96 0.80 0.36 0.22 0.57 A 0.20 0.04 0.20 0.64 0.78 0.43 0000 --- --- --- --- 009704 00000 ------------ T 0.97 0.92 1.00 1.00 1.00 0.98 C 0.03 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 009875 00000 ------------ C 0.96 0.90 1.00 1.00 1.00 0.98 T 0.04 0.10 0.00 0.00 0.00 0.02 0000 --- --- --- --- 009972 00000 ------------ G 0.96 0.95 1.00 1.00 1.00 0.99 A 0.04 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 010148 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 010174 00352 SYNON G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0067 GAG GAA GLU(E) GLU(E) 010204 00382 SYNON G 0.92 0.96 1.00 1.00 1.00 0.98 A 0.08 0.04 0.00 0.00 0.00 0.02 0077 CTG CTA LEU(L) LEU(L) 010339 00000 ------------ T 0.79 0.67 0.80 0.84 0.98 0.84 C 0.21 0.33 0.20 0.16 0.02 0.16 0000 --- --- --- --- 010355 00000 ------------ G 0.79 0.67 0.80 0.84 0.98 0.84 A 0.21 0.33 0.20 0.16 0.02 0.16 0000 --- --- --- --- 010555 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 012229 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 012489 00000 ------------ - 1.00 1.00 1.00 0.98 1.00 0.99 + 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 012600 00000 ------------ C 0.82 0.95 0.80 0.38 0.21 0.59 A 0.18 0.05 0.20 0.62 0.79 0.41 0000 --- --- --- --- 012708 00000 ------------ G 1.00 1.00 1.00 1.00 0.92 0.98 A 0.00 0.00 0.00 0.00 0.08 0.02 0000 --- --- --- --- 012933 00000 ------------ G 0.96 0.83 1.00 0.98 1.00 0.97 A 0.04 0.17 0.00 0.02 0.00 0.03 0000 --- --- --- --- 013149 00000 ------------ A 0.90 0.83 1.00 1.00 1.00 0.96 G 0.10 0.17 0.00 0.00 0.00 0.04 0000 --- --- --- --- 013659 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 013720 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 013857 00000 ------------ G 0.83 0.79 0.41 0.86 0.79 0.73 A 0.17 0.21 0.59 0.14 0.21 0.27 0000 --- --- --- --- 013973 00000 ------------ G 0.80 0.85 0.80 0.88 1.00 0.87 A 0.20 0.15 0.20 0.12 0.00 0.13 0000 --- --- --- --- 014071 00000 ------------ G 0.87 0.91 1.00 0.98 1.00 0.96 T 0.13 0.09 0.00 0.02 0.00 0.04 0000 --- --- --- --- 014251 00682 NON-SYN C 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0177 AAC AAA ASN(N) LYS(K) 014396 00000 ------------ G 1.00 1.00 0.80 0.98 0.98 0.94 A 0.00 0.00 0.20 0.02 0.02 0.06 0000 --- --- --- --- 014408 00000 ------------ - 0.97 0.96 1.00 1.00 1.00 0.99 + 0.03 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 014431 00000 ------------ G 0.93 0.95 1.00 1.00 1.00 0.98 A 0.07 0.05 0.00 0.00 0.00 0.02 0000 --- --- --- --- 014438 00000 ------------ - 0.82 0.77 0.41 0.86 0.79 0.72 + 0.18 0.23 0.59 0.14 0.21 0.28 0000 --- --- --- --- 014783 00000 ------------ G 0.92 0.96 1.00 1.00 1.00 0.98 A 0.08 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 014798 00000 ------------ C 0.92 0.96 0.79 0.90 0.98 0.90 T 0.08 0.04 0.21 0.10 0.02 0.10 0000 --- --- --- --- 014816 00000 ------------ - 0.04 0.00 0.02 0.02 0.00 0.02 + 0.96 1.00 0.98 0.98 1.00 0.98 0000 --- --- --- --- 015254 00886 SYNON C 1.00 0.88 1.00 1.00 1.00 0.98 T 0.00 0.12 0.00 0.00 0.00 0.02 0245 GAC GAT ASP(D) ASP(D) 015616 00000 ------------ A 0.80 0.79 0.41 0.84 0.77 0.71 G 0.20 0.21 0.59 0.16 0.23 0.29 0000 --- --- --- --- 015807 00000 ------------ A 0.90 0.75 0.80 0.86 0.98 0.87 G 0.10 0.25 0.20 0.14 0.02 0.13 0000 --- --- --- --- 016002 00000 ------------ A 0.97 0.83 1.00 0.98 1.00 0.97 G 0.03 0.17 0.00 0.02 0.00 0.03 0000 --- --- --- --- 016052 00000 ------------ C 0.93 0.82 1.00 1.00 1.00 0.97 T 0.07 0.18 0.00 0.00 0.00 0.03 0000 --- --- --- --- 016446 00000 ------------ C 0.69 0.50 0.80 0.83 0.98 0.80 T 0.31 0.50 0.20 0.17 0.02 0.20 0000 --- --- --- --- 016485 00000 ------------ G 1.00 1.00 1.00 0.71 0.71 0.86 A 0.00 0.00 0.00 0.29 0.29 0.14 0000 --- --- --- --- 016817 00000 ------------ C 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 016887 00000 ------------ C 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 017013 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 017164 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 017447 00000 ------------ G 1.00 0.83 1.00 0.98 1.00 0.97 A 0.00 0.17 0.00 0.02 0.00 0.03 0000 --- --- --- --- 018306 00000 ------------ C 0.97 0.83 1.00 0.98 1.00 0.97 T 0.03 0.17 0.00 0.02 0.00 0.03 0000 --- --- --- --- 018316 00000 ------------ C 0.97 0.83 1.00 0.98 1.00 0.97 T 0.03 0.17 0.00 0.02 0.00 0.03 0000 --- --- --- --- 018608 00000 ------------ A 1.00 1.00 0.98 1.00 1.00 0.99 G 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 018726 00000 ------------ G 0.93 0.79 1.00 1.00 1.00 0.96 A 0.07 0.21 0.00 0.00 0.00 0.04 0000 --- --- --- --- 018845 00000 ------------ T 0.70 0.82 1.00 1.00 1.00 0.93 C 0.30 0.18 0.00 0.00 0.00 0.07 0000 --- --- --- --- 018993 00000 ------------ G 1.00 1.00 1.00 1.00 0.90 0.97 A 0.00 0.00 0.00 0.00 0.10 0.03 0000 --- --- --- --- 019534 01681 3' UTR T 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 019914 00000 ------------ G 0.96 0.86 1.00 0.98 1.00 0.97 A 0.04 0.14 0.00 0.02 0.00 0.03 0000 --- --- --- --- 020008 00000 ------------ A 0.89 0.96 1.00 1.00 1.00 0.98 G 0.11 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 020016 00000 ------------ A 0.75 0.96 0.80 0.39 0.25 0.57 C 0.25 0.04 0.20 0.61 0.75 0.43 0000 --- --- --- --- 020139 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 A 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 020698 00000 ------------ G 0.50 0.56 0.80 0.82 0.98 0.81 A 0.50 0.44 0.20 0.18 0.02 0.19 0000 --- --- --- --- 020705 00000 ------------ G 1.00 0.94 1.00 1.00 1.00 0.99 A 0.00 0.06 0.00 0.00 0.00 0.01 0000 --- --- --- --- 020783 00000 ------------ - 0.00 0.00 0.00 0.07 0.00 0.02 + 1.00 1.00 1.00 0.93 1.00 0.98 0000 --- --- --- --- 020945 00000 ------------ - 0.10 0.12 0.00 0.00 0.00 0.02 + 0.90 0.88 1.00 1.00 1.00 0.98 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 005630: T 005923: AAAA 008553: CA 009262: GCCCTGCTCTGTGGCAGAGCTAGCCTCTGGCTGTATTCAAATTGACTTAGTG 012489: A 014408: C 014438: C 014816: G 020783: AAA 020945: AAAG