PHASE
Output
|
Unprocessed output from the PHASE haplotype inference program (Stephens, et al. Am J Hum Genet. 2001) for the sample population. All inference was performed by using a minor allele frequency cutoff of 5% (i.e., sites below this threshold were removed prior to inference).
|
Phased
Individual Haplotypes
|
Phased haplotype data determined for each individual in the sample population as determined by PHASE. Polymorphism data for each haplotype is formatted as a tab-delimited file with the following fields:
<Ref. Sequence Position> <Individ-HaplotypeID> <HaplotypeAllele> <HaplotypeAllele>
|
Phased
Individual Haplotypes
(frequency sorted)
|
Phased
haplotype data determined for each individual
in the sample
population as determined by PHASE, which
is then sorted by haplotype frequency (i.e.,
the most common haplotype is repeated the number
of times it was observed in this population,
followed by the second most common, etc.).
The same data formatting is used as in the
Phased Individual Haplotypes.
|
