| Visual Genotype |
A graphical representation of the individual genotypes file data. Polymorphic sites are consecutively ordered (5' to 3') on the horizontal axis and individual samples on the vertical axis of the array. The genotype for each individual sample at each polymorphic site is color coded as
blue = homozygous (common allele),
yellow = homozygous (rare allele),
red = heterozygous (both alleles),
gray = genotype not determined.
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Individual Genotypes |
Genotypes for each
individual sample at each polymorphic site.
Line format: <Ref. Sequence Position> <Sample ID> <Allele1> <Allele2>
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SNP Alleles
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Alleles at each polymorphic site along with their respective counts. Allele counts are listed for each sample population and the combined samples.
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| SNP Allele Frequency
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Frequency of each allele at each polymorphic site. Allele frequencies are listed for each sample population and the combined samples. The last three columns list the heterozygosity for each polymorphic site (hz).
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