CALCA Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of GeneSNPs

AGATGGTGGA GACGCTGAAA AGCTTCTTTC TTGCCACTCT GGACGCTGTG 50 | var(45):[C:0.04]
GGCGGCAAGC GCCTTAGTCC CTACCTCTGC TGAGCTGAAC GCTCAGGCAC 100
AGTGGAACTG AAACCCGGTT CTGCGGGATG TGAGAGCTGT TGAGGTCACG 150
CGTAATTGGG TGTGATGGAG GGCGCCTGTT CGTGATGTGT GCAGGTTTGA 200
TGCAAGCAGG TCATCGTCGT GCGAGTGTGT GGATGCGACC GCCCGAGAGA 250 | var(221):[A:0.01]
CTCGGAGGCA GGCTTGGGAC ACGTTTGAGT GAACACCTCA GGATACTCTT 300
CTGGCCAGTA TCTGTTTTTT AGTGTCTGTG ATTCAGAGTG GGCACATGTT 350
GGGAGACAGT AATGGGTTTG GGTGTGTGTA AATGAGTGTG ACCGGAAGCG 400 | var(381):[T:0.04]
AGTGTGAGCT TGATCTAGGC AGGGACCACA CAGCACTGTC ACACCTGCCT 450 | var(413):[G:0.01]
GCTCTTTAGT AGAGGACTGA AGTGCGGGGG TGGGGGTACG GGGCCGGAAT 500 | NOT SCANNED
AGAATGTCTC TGGGACATCT TGGCAAACAG CAGCCGGAAG CAAAGGGGCA 550
GCTGTGCAAA CGGCTCAGGC AGGTGATGGA TGGCAGGGTA GGAAGGGGGA 600
GGTCCAGAGG TCTGGATGGA GGCTTCCGCA TCTGTACCTT GCAACTCACC 650
CCTCAGGCCC AGCAGGTCAT CGGCCCCCTC CTCACACATG TAATGGATCT 700
GAAGAGTACC CCGGGACAGT CCGGGGAGAT GGAGATTCGG AAAGTATCCA 750
TGGAGATCTT ACAGAATCCC CTATGCGGAC CAGGAAACTC TTGTAGATCC 800
CTGCCTATCT GAGGCCCAGG CGCTGGGCTG TTTCTCACAA TATTCCTTCA 850 | REPEAT | var(845):[A:0.01]
AGATGAGATT GTGGTCCCCA TTTCAAAGAT GAGTACACTG AGCCTCTGTG 900 | var(859):[C:0.34] | var(893):[G:0.35]
AAGTTACTTG CCCATGATCA CACAACCAGG AATTGGGCCA ACTGTAATTG 950
AACTCCTGTC TAACAAAGTT CTTGCTCCCA GCTCCGTCTC TTGTTTCCCA 1000
CGAGCCCTGG CCCTCTGTGG GTAATACCAG CTACTGGAGT CAGATTTCTT 1050
GGGCCCAGAA CCCACCCTTA GGGGCATTAA CCTTTAAAAT CTCACTTGGG 1100
CAGGGGTCTG GGATCAGAGT TGGAAGAGTC CCTACAATCC TGGACCCTTT 1150
CCGCCAAATC GTGAAACCAG GGGTGGAGTG GGGCGAGGGT TCAAAACCAG 1200
GCCGGACTGA GAGGTGAAAT TCACCATGAC GTCAAACTGC CCTCAAATTC 1250
CCGCTCACTT TAAGGGCGTT ACTTGTTGGT GCCCCCACCA TCCCCCACCA 1300 | var(1266):[A:0.01]
TTTCCATCAA TGACCTCAAT GCAAATACAA GTGGGACGGT CCTGCTGGAT 1350
CCTCCAGGTT CTGGAAGCAT GAGGGTGACG CAACCCAGGG GCAAAGGACC 1400 | var(1386):[G:0.01]
CCTCCGCCCA TTGGTTGCTG TGCACTGGCG GAACTTTCCC GACCCACAGC 1450
GGCGGGAATA AGAGCAGTCG CTGGCGCTGG GAGGCATCAG AGACACTGCC 1500 | var(1479):[A:0.01]
CAGCCCAAGT GTCGCCGCCG CTTCCACAGG GCTCTGGCTG GACGCCGCCG 1550 | var(1503):[C:0.01] | Exon 1 | UTR
CCGCCGCTGC CACCGCCTCT GATCCAAGCC ACCTCCCGCC AG
GTGAGCCC 1600
CGAGATTCTG GCTCAGGTAT ATGTCTCTCC CTCCCTCTCC CTCCATTCGT 1650
CATTTTCTCA CTCCCTTTCC TCCTCTCCCT CTCTCTCCGT TAGTCTCTTC 1700 | var(1688):[T:0.01]
ATCAGATAGT CTCTGTTAGT CCGCGATTTA TACCAGGCTC GTGCCCTAGG 1750
TTGGATCGGA CAGTCTCAAT CCCCCGGCTC GCTCTTCCTG CTCGGCTGCG 1800 | var(1779):[C:0.01]
GACTCCAGTC TTACTCTCTC GCACTGCACA CAGGCTTAGG CCAGTCTCGG 1850
GACACTCAGG CTCCCCAGGG ACCGCGCACA GAGCCTGAGG CAAGAGAAAC 1900
TTTCCGCAGA CGGTGCGATC AGGGACGGCG TCTGGAGCCC AGCAGTCCCA 1950 | var(1927):[A:0.05]
GGGAAATTGG TTCAGAACCT GGAACAGAGC GGATGGGTGG CAAATAGGCA 2000
CGACGACTGA GGGACAAGCA GCCCTAAACT GCAAGCCCCA GTCACAGGCT 2050
CTGGGAGCAA AGAGAGAAAG TCTTGGGTCC CAATTTAAGA GTAAAACTTG 2100
GTTCCTGCAG GGGACTGAGG TGCCAGCAGG CGGAGCTTAG GCTGAGCACT 2150
AAAATTGATT CTTTTATTTC TCAGATTCCA ATTGCAGAGA TAATCTCTGT 2200
GGATAGATCC CACCCCTCCC ACCAAGGTGT ATGCAAAAGC CCCAGAAGAG 2250
GAGGACAGCT CTGGGTTTCC TTATGGGATC AGCTTCTGTG ACAGGGGCCT 2300
GGGAGCATGT CCTCCACAGA GACCTGGCTA ACAGGTTTAT ATGTATCTGT 2350
GTGGCTTTGG GGAGAAGGGT AGGACTGAGA CCTCCCCCAC TCAGCTCTCC 2400
CTCTAGGATC GCTCCTCCAG CTCTATCAGA CTGTGCATGC TACAGGCCCA 2450
CTGAACCTCC CAGAAGTCCA CTGTGCTGAT GAGGAAACAA AAAAGAAGAG 2500
AAATATAATG ACCAGTCTGA AGCCACAAAG CCAGAGCGTT AGAAGCAAGA 2550
CAGAAAACCA GGATAGGAGC CAAGGTCTGT GGGCTCCTAG AACTTCGAAC 2600 | var(2572):[:0.02]
TGGCGCAGGT GGTTTATCTC ATTCTTCCCT TGCAGAGAGG TGTCATGGGC 2650 | Exon 2 | UTR | var(2648):[C:0.01]
                                                 M  G  2
TTCCAAAAGT TCTCCCCCTT CCTGGCTCTC AGCATCTTGG TCCTGTTGCA 2700
 F  Q  K   F  S  P  F   L  A  L   S  I  L   V  L  L  Q 19
GGCAGGCAGC CTCCATGCAG CACCATTCAG GTAAGACAGC CTGAAGCCAG 2750 | var(2742):[G:0.01]
  A  G  S   L  H  A   A  P  F  R                       29
AACCACACTG GTATCAGACA ATTCCATGCC TCTTAAGTGT GGTGTACTGA 2800 | var(2777):[A:0.01] | var(2779):[:0.01] | REPEAT
ATGCTTAAAA ACCGACAGGG GGCCGGGGTA AGGTATGTAC TCATGCACAT 2850
ATATAATTTT TTGATATAAA AATGTGTGGT ACACAATTTA TAAGTAGTGA 2900
TAAATATTTA GACAATATTC TTCATTATAA TTTTTTTGAG ACAGAGTCTC 2950 | REPEAT
ACTCTGTCAT CCATGCTGGA GTGCAATGGC ACCGTGTCGG CTCACTGCAA 3000
CTTCCATCTC CTGGGTTCAA GCAATTCTCC TGCCTCAGCC TCCCAAGTAG 3050 | var(3008):[T:0.01]
CCGGGATTAC AGGCGCCCAC CACCATGCCC GGCTAATTTT TGTATTTTTA 3100 | var(3053):[A:0.05] | var(3080):[T:0.01]
GTAGAGATAG GGTTTCACCA TGTTGGCCAG GCTGGTCTCA AACTCCTGAC 3150
CTCAGGTGAT CCACCTGCCT CAGCCTCCCA AAGTGCTGAG ATTACAGCCG 3200
TGAGCCACCG CGCCCGGCCT ATTATAAATT TTATATAGCC CACTGAGTCT 3250 | REPEAT
CACAAAATGC TTTTGTTGCT TTTAGCCAAA CTTTTGTATG TGTAGCCATC 3300 | var(3279):[G:0.01]
CTATTTATCC TATTCAGCCA TGATTTGAAA AATGAATTGC ATCCTATTCT 3350
GTTAAATAGT TTGCCACTAA ATTTGTTATT GTTAAATCTG GTATTTTACC 3400
TGTTGATCTA TTTCTCACCC ACATATAAAT CTATTAAACT GAAACTATTT 3450
TCAGGTTCAG CACTAACTGT AAGTTTTTGC ATTTAATTTT TAATAATGGC 3500 | REPEAT
TGCACTCAGC TTGCAAAATT CTTGAAAATT TAACCATTAG CTTTCACAAG 3550
CCTATACAAA CTGGCTCCAG CACACCACTG CTTAGAGGCC ACACCAGTGC 3600 | var(3581):[T:0.06]
CTGGGTCCTG AGGAGGACAC TGGCCTTGTG CCCTGTCCCC TAGGACTCCC 3650
GCTGGCCACA TCCTCAGGGG AAGAAGCAAA GACCAGGAAG CCTGGCTGCT 3700
TATCCTGGGG AGGGGCAGGC AGGGGCTCAC AGCCTGCACT GAGTTTGCTT 3750
CCCCTCCACA GGTCTGCCCT GGAGAGCAGC CCAGCAGACC CGGCCACGCT 3800 | Exon 3
              S  A  L   E  S  S   P  A  D   P  A  T  L 42
CAGTGAGGAC GAAGCGCGCC TCCTGCTGGC TGCACTGGTG CAGGACTATG 3850
  S  E  D   E  A  R   L  L  L  A   A  L  V   Q  D  Y   58
TGCAGATGAA GGCCAGTGAG CTGGAGCAGG AGCAAGAGAG AGAGGGCTCC 3900 | var(3874):[A:0.01]
V  Q  M  K   A  S  E   L  E  Q   E  Q  E  R   E  G  S  75
AGGTGAGGCT CCCCAAGCGC TCAGCACAGG GCCTCCTCTC CCCGCAGCAT 3950
 S                                                     76
ACACAGGAAG GTGGATCCCG AGAGGTAGGA GAGAACACAC TGGCCAGGAA 4000 | var(3965):[G:0.01]
TCCAACAGGC TGTGTTGTTC ACCGGGACCT GGGGCCCAGC TGTTCTCAGC 4050 | NOT SCANNED | REPEAT
CTCCAAGGGA GACAGAGGTC CCACTGCAGC TGGAGGTACC GTGGTTAGAC 4100
ATAACAAAAG GCTCCGTTTC TGAAAGTTCT TAGGAAATGA AATGGGGAGG 4150
TGTGGAATCG CTCACTGTGG GAA
TTGTTCT TGCAGTACTG GGAGACCTCC 4200
CAGCACTGGA TGAGTTAAGA CTAGTAAGGG TGAAGTCAGG GATACACATA 4250
GTACATCTCA GGAAGTTTTA GAAATTTGGA TCCACCTTGT TAATCTGCAT 4300
ACGACATTCT TTCACACCTG CAAGGAGCTT TCATTTCACA TTTGCAAGGT 4350
GAAGGTGAGG CCCTTGCAGG GGATGGGGAT GGGTAGAGCA GTGTCTGAGG 4400
TAGGTTTGAG CCTTTAAATG TGTGGCATCT GTGGAGATGT GCATGTTGTC 4450
AGGAGGCCAG GGAGAGCACC CTTCCCCAGA TCCACATCCC TGTGTACCTT 4500
GAGCCTGAGC AGAGACCAGC CCCTGGCCTG GCCCCAGCAC TGCTCAGGCA 4550
GAGGCATGTG TTGCCCCTGC ATCTGCCCTG AGAACCCCTC TGTCAAGCAT 4600 | var(4563):[T:0.02]
GAAGGACTGA ACAGCATGTG GAATGCCAGA AAAGATCATC CTTCCCCATC 4650
CAGCCCTTCC CTGCATTGCC CTAGCCCACT GCACCTCTGA GCTCTCCTAA 4700
TGAAGGATAG ATAAGTGAGC TGCCCTCCTG CCTGCCCCTC CTGCTCCCAG 4750
GGTCCCCTGC CTGGTCTAAC CTTCTAAGTG ACTGCCCATG GGGACAGATT 4800
CTGGTGCATG GTACTGTCTG GTATGTGTTT TCCCTGCAGC CTGGACAGCC 4850 | Exon 4 | var(4840):[A:0.04]
                                             L  D  S   79
CCAGATCTAA GCGGTGCGGT AATCTGAGTA CTTGCATGCT GGGCACATAC 4900
P  R  S  K   R  C  G   N  L  S   T  C  M  L   G  T  Y  96
ACGCAGGACT TCAACAAGTT TCACACGTTC CCCCAAACTG CAATTGGGGT 4950 | var(4927):[A:0.01]
 T  Q  D   F  N  K  F   H  T  F   P  Q  T   A  I  G  V 113
TGGAGCACCT GGAAAGAAAA GGGATATGTC CAGCGACTTG GAGAGAGACC 5000 | var(4979):[A:0.01] | var(4990):[A:0.01]
  G  A  P   G  K  K   R  D  M  S   S  D  L   E  R  D   129
ATCGCCCTCA TGTTAGCATG CCCCAGAATG CCAACTAAAC TCCTCCCTTT 5050 | var(5025):[C:0.01] | UTR
H  R  P  H   V  S  M   P  Q  N   A  N                  141
CCTTCCTAAT TTCCCTTCTT GCATCCTTCC TATAACTTGA TGCATGTGGT 5100
TTGGTTCCTC TCTGGTGGCT CTTTGGGCTG GTATTGGTGG CTTTCCTTGT 5150
GGCAGAGGAT GTCTCAAACT TCAGATGGGA GGAAAGAGAG CAGGACTCAC 5200
AGGTTGGAAG AGAATCACCT GGGAAAATAC CAGAAAATGA GGGCCGCTTT 5250 | var(5246):[A:0.01]
GAGTCCCCCA GAGATGTCAT CAGAGCTCCT CTGTCCTGCT TCTGAATGTG 5300
CTGATCATTT GAGGAATAAA ATTATTTTTC CCC
AAAGATC TGAGCTGTGG 5350
TGGTCATTGC TCTGATCTAT GTCCCAGGCT TCATAGTGTC TAAGACCTAT 5400
GCTTAGAAAT AGCCTTAACC CTAGGCTAGC TGGACAGAGG ATATGGTGGG 5450
TGGTCCCTTT GACCAAGCTC AAGCAGGAAG AACAGGGGTC CTAAGGAGCA 5500 | var(5477):[C:0.04]
GGTAAGCACC TCTAGGACTT GATGCTGCAA ACTCCGCTCC TCTTCCAGGT 5550 | var(5533):[G:0.01] | var(5536):[A:0.01]
AAGACTGAGG AATTTTTTAT TTTCCTAAGA AAGGGTATTT GGTGCCCGTG 5600
ACTGGGGTGT AGATTTTATA GTCCTTTGTG AATGGGGCTG GGTGTGGGAC 5650
CATAATTCAC TCCAGTGTCA TAAACCTCCG CTTTGATTTT TAGTTAATTT 5700
ATACAGGAAA GATTGGCTGT TACTGCTCCA CATTCCATAG CCAGTCATCC 5750
AGAGTCACCT TGGGTTTTCT GACACCCCTG GGAATATCTA TGGGGAGTGA 5800
TCATGGCATT TTCCCTAATG GCCTTGTGAT TTTCTGCTCT GATAATTGTG 5850
TTTAGGAGAA ACACTTAAAG TTAATTGGTG CCTTTCAGCA CAGCAACTTT 5900
ACCATGAAGG TCCCATGGGG CTGACCTCTC TCCCAGCCTC TCACTCACAG 5950
ATCTTCTCTT CTTTCTCCAT CCTGCAAATC AGAATCATTG CCCAGAAGAG 6000
AGCCTGTGAC ACTGCCACCT GTGTGACTCA TCGGCTGGCA GGCTTGCTGA 6050
GCAGATCAGG GGGTGTGGTG AAGAACAACT TTGTGCCCAC CAATGTGGGT 6100
TCCAAAGCCT TTGGCAGGCG CCGCAGGGAC CTTCAAGCCT GAGCAGCTGA 6150
ATGACTCAAG AAGGTGACTG CCCTTGTATG ATGGGATGGG AAGATGAATG 6200
ACTGGTTTTT ACAGGGGTGT AAAACCACTC TGAGCCTCTC TGAGACCATG 6250
TGGTTTTAAA AAATCCATAA GGGAAGGTAC CCACACCAGT ATCTGAGTTC 6300 | var(6262):[T:0.28]
CAGTAGCTAA GACCCTAGAA TTTGGATTCA TCTCTGTTTT TTCAGTCTCT 6350
CCTTGTAACC CTGAGATCAT CAGACCAAGA AATACAGATC CTGTTTATTT 6400 | var(6385):[T:0.34]
AGAACACTGC TGTTTGACAT TTATAATTTT GATTATTCTA GCCTTTGAGT 6450
TTGAAAGATA ATGACACTAT CATTTTAGAG TATACATTAC TATGTTGTGT 6500
ACCTCTGAAT TAAGTGTACA GACTTGAGTT CAAGAACTGT ATTTGCCCTT 6550 | REPEAT
TACCAGCTAT ATGACCATGA ACAGGTTACT TAACTCTCTC CAAGCCTCAG 6600 | var(6562):[C:0.01]
TTTCTCCATC TGTAAATTGA GGGCTACAAT AGTACCTACC TCCAAGCATT 6650
ACTATAAAGA GCAAGTGAGG TAATAGATGT TAAGTCTGAC AATTAACCAG 6700 | var(6670):[A:0.05]
TAACTAAATT CTAGCTGTTA TTTTCTTCCT CCTAGGTCAC AATAAAGCTG 6750
AACTCCTTTT AATGTGTAAT GAAAGCAATT TGTAGGAAAG GCT