Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000192 00000 ------------ G 0.67 0.38 0.64 0.73 0.91 0.70 C 0.33 0.62 0.36 0.27 0.09 0.30 0000 --- --- --- --- 000262 00000 ------------ C 0.93 1.00 0.93 1.00 0.76 0.91 T 0.07 0.00 0.07 0.00 0.24 0.09 0000 --- --- --- --- 000318 00000 ------------ T 0.73 0.79 0.57 0.52 0.35 0.56 C 0.27 0.21 0.43 0.48 0.65 0.44 0000 --- --- --- --- 000374 00000 ------------ C 0.77 0.92 0.77 0.80 0.76 0.79 T 0.23 0.08 0.23 0.20 0.24 0.21 0000 --- --- --- --- 000815 00000 ------------ C 0.93 1.00 1.00 1.00 1.00 0.99 G 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001241 00000 ------------ C 1.00 1.00 0.98 0.95 1.00 0.98 T 0.00 0.00 0.02 0.05 0.00 0.02 0000 --- --- --- --- 002218 00000 ------------ T 0.57 0.83 0.75 0.74 0.77 0.73 C 0.43 0.17 0.25 0.26 0.23 0.27 0000 --- --- --- --- 002227 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 002335 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 002357 00000 ------------ A 0.70 0.38 0.66 0.71 0.92 0.71 T 0.30 0.62 0.34 0.29 0.08 0.29 0000 --- --- --- --- 002781 00000 ------------ A 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 002905 00000 ------------ G 0.57 0.88 0.76 0.75 0.75 0.74 T 0.43 0.12 0.24 0.25 0.25 0.26 0000 --- --- --- --- 002947 00000 ------------ A 0.97 1.00 1.00 0.98 1.00 0.99 G 0.03 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 009656 00000 ------------ - 0.07 0.00 0.00 0.00 0.02 0.02 + 0.93 1.00 1.00 1.00 0.98 0.98 0000 --- --- --- --- 009931 00000 ------------ C 0.92 0.90 1.00 1.00 1.00 0.98 T 0.08 0.10 0.00 0.00 0.00 0.02 0000 --- --- --- --- 010048 00000 ------------ A 0.93 1.00 1.00 0.95 0.98 0.97 G 0.07 0.00 0.00 0.05 0.02 0.03 0000 --- --- --- --- 010197 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 011144 00000 ------------ G 0.63 0.83 0.75 0.77 0.75 0.75 A 0.37 0.17 0.25 0.23 0.25 0.25 0000 --- --- --- --- 011736 00000 ------------ A 1.00 0.62 0.68 0.76 0.92 0.80 G 0.00 0.38 0.32 0.24 0.08 0.20 0000 --- --- --- --- 011753 00000 ------------ A 0.73 0.79 0.59 0.52 0.33 0.56 G 0.27 0.21 0.41 0.48 0.67 0.44 0000 --- --- --- --- 012003 00000 ------------ T 0.70 0.38 0.66 0.70 0.92 0.71 G 0.30 0.62 0.34 0.30 0.08 0.29 0000 --- --- --- --- 012085 00000 ------------ A 1.00 1.00 1.00 1.00 0.94 0.98 G 0.00 0.00 0.00 0.00 0.06 0.02 0000 --- --- --- --- 012105 00000 ------------ A 0.70 0.38 0.66 0.70 0.92 0.71 C 0.30 0.62 0.34 0.30 0.08 0.29 0000 --- --- --- --- 019228 00000 ------------ G 0.63 0.83 0.75 0.74 0.76 0.74 A 0.37 0.17 0.25 0.26 0.24 0.26 0000 --- --- --- --- 019278 00000 ------------ - 0.13 0.00 0.00 0.00 0.00 0.02 + 0.87 1.00 1.00 1.00 1.00 0.98 0000 --- --- --- --- 019398 00000 ------------ C 0.71 0.83 1.00 0.94 1.00 0.92 T 0.29 0.17 0.00 0.06 0.00 0.08 0000 --- --- --- --- 019632 00000 ------------ - 0.30 0.62 0.33 0.31 0.08 0.30 + 0.70 0.38 0.67 0.69 0.92 0.70 0000 --- --- --- --- 020100 00000 ------------ C 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 020154 00000 ------------ A 1.00 1.00 0.98 1.00 1.00 0.99 G 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 020350 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 020843 00000 ------------ T 0.73 0.79 0.59 0.52 0.33 0.56 C 0.27 0.21 0.41 0.48 0.67 0.44 0000 --- --- --- --- 020872 00000 ------------ T 0.70 0.38 0.66 0.70 0.92 0.71 C 0.30 0.62 0.34 0.30 0.08 0.29 0000 --- --- --- --- 020898 00000 ------------ G 0.90 0.92 1.00 1.00 1.00 0.97 A 0.10 0.08 0.00 0.00 0.00 0.03 0000 --- --- --- --- 020953 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 021172 00000 ------------ A 0.93 1.00 1.00 1.00 1.00 0.99 G 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 021227 00000 ------------ C 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 021236 00000 ------------ C 0.75 0.41 0.60 0.70 0.92 0.71 T 0.25 0.59 0.40 0.30 0.08 0.29 0000 --- --- --- --- 021244 00000 ------------ G 0.75 0.41 0.60 0.70 0.92 0.71 A 0.25 0.59 0.40 0.30 0.08 0.29 0000 --- --- --- --- 021552 00000 ------------ G 0.92 1.00 0.90 0.98 1.00 0.96 A 0.08 0.00 0.10 0.02 0.00 0.04 0000 --- --- --- --- 021612 00000 ------------ - 0.38 0.23 0.35 0.48 0.67 0.46 + 0.62 0.77 0.65 0.52 0.33 0.54 0000 --- --- --- --- 025927 00000 ------------ T 0.75 0.42 0.64 0.75 0.91 0.72 C 0.25 0.58 0.36 0.25 0.09 0.28 0000 --- --- --- --- 026502 00000 ------------ - 0.07 0.00 0.02 0.05 0.00 0.03 + 0.93 1.00 0.98 0.95 1.00 0.97 0000 --- --- --- --- 026615 00000 ------------ A 0.75 0.42 0.67 0.74 0.91 0.72 G 0.25 0.58 0.33 0.26 0.09 0.28 0000 --- --- --- --- 027330 00448 NON-SYN A 1.00 1.00 1.00 0.97 1.00 0.99 G 0.00 0.00 0.00 0.03 0.00 0.01 0107 AAT AGT ASN(N) SER(S) 027408 00526 NON-SYN C 1.00 0.95 0.97 0.95 0.98 0.97 T 0.00 0.05 0.03 0.05 0.02 0.03 0133 TCT TTT SER(S) PHE(F) 027736 00854 NON-SYN T 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0242 GAT GAG ASP(D) GLU(E) 027958 00000 ------------ C 1.00 0.95 1.00 1.00 1.00 0.99 T 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 028510 00000 ------------ A 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 028979 00000 ------------ T 0.61 0.77 0.71 0.82 0.73 0.73 C 0.39 0.23 0.29 0.18 0.27 0.27 0000 --- --- --- --- 029091 00000 ------------ G 1.00 1.00 0.97 0.97 0.98 0.98 A 0.00 0.00 0.03 0.03 0.02 0.02 0000 --- --- --- --- 029202 00000 ------------ T 0.61 0.79 0.71 0.82 0.76 0.74 C 0.39 0.21 0.29 0.18 0.24 0.26 0000 --- --- --- --- 029224 00000 ------------ T 0.61 0.77 0.69 0.82 0.76 0.73 C 0.39 0.23 0.31 0.18 0.24 0.27 0000 --- --- --- --- 029533 00000 ------------ A 0.63 0.79 0.76 0.75 0.75 0.74 G 0.37 0.21 0.24 0.25 0.25 0.26 0000 --- --- --- --- 032497 00000 ------------ A 0.93 0.96 1.00 1.00 1.00 0.98 T 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 032985 00000 ------------ T 1.00 0.96 0.97 0.97 1.00 0.98 A 0.00 0.04 0.03 0.03 0.00 0.02 0000 --- --- --- --- 033449 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 033671 00000 ------------ C 0.67 0.83 0.81 0.84 0.75 0.78 T 0.33 0.17 0.19 0.16 0.25 0.22 0000 --- --- --- --- 034385 00000 ------------ G 0.64 0.79 0.78 0.76 0.75 0.75 C 0.36 0.21 0.23 0.24 0.25 0.25 0000 --- --- --- --- 034862 00000 ------------ G 0.63 0.79 0.75 0.77 0.75 0.74 A 0.37 0.21 0.25 0.23 0.25 0.26 0000 --- --- --- --- 034952 00000 ------------ C 0.63 0.79 0.75 0.77 0.75 0.74 T 0.37 0.21 0.25 0.23 0.25 0.26 0000 --- --- --- --- 035018 00000 ------------ A 0.77 0.92 0.75 0.77 0.75 0.78 G 0.23 0.08 0.25 0.23 0.25 0.22 0000 --- --- --- --- 035062 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 040915 00000 ------------ A 0.68 0.79 0.75 0.77 0.75 0.75 G 0.32 0.21 0.25 0.23 0.25 0.25 0000 --- --- --- --- 041105 00000 ------------ C 0.63 0.79 0.75 0.75 0.74 0.73 G 0.37 0.21 0.25 0.25 0.26 0.27 0000 --- --- --- --- 041581 00000 ------------ A 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 041725 00000 ------------ G 0.71 0.79 0.59 0.52 0.34 0.56 A 0.29 0.21 0.41 0.48 0.66 0.44 0000 --- --- --- --- 041822 00000 ------------ T 1.00 1.00 1.00 1.00 0.95 0.99 G 0.00 0.00 0.00 0.00 0.05 0.01 0000 --- --- --- --- 042009 01396 NON-SYN A 0.70 0.42 0.64 0.70 0.92 0.71 C 0.30 0.58 0.36 0.30 0.08 0.29 0423 CAA CCA GLN(Q) PRO(P) 042107 00000 ------------ G 1.00 1.00 0.97 1.00 1.00 0.99 C 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 042261 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 042427 00000 ------------ - 0.67 0.78 0.75 0.78 0.74 0.75 + 0.33 0.22 0.25 0.23 0.26 0.25 0000 --- --- --- --- 042701 00000 ------------ T 1.00 1.00 0.97 1.00 1.00 0.99 C 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 047411 00000 ------------ T 0.70 0.45 0.66 0.70 0.92 0.72 A 0.30 0.55 0.34 0.30 0.08 0.28 0000 --- --- --- --- 047438 00000 ------------ G 0.87 0.85 1.00 1.00 1.00 0.96 A 0.13 0.15 0.00 0.00 0.00 0.04 0000 --- --- --- --- 048162 00000 ------------ T 0.63 0.79 0.75 0.77 0.76 0.74 C 0.37 0.21 0.25 0.23 0.24 0.26 0000 --- --- --- --- 048228 00000 ------------ C 0.63 0.79 0.75 0.77 0.75 0.74 T 0.37 0.21 0.25 0.23 0.25 0.26 0000 --- --- --- --- 048542 01634 3' UTR A 0.63 0.79 0.75 0.75 0.76 0.74 G 0.37 0.21 0.25 0.25 0.24 0.26 0000 --- --- --- --- 048610 01702 3' UTR G 1.00 1.00 0.98 0.95 1.00 0.98 C 0.00 0.00 0.02 0.05 0.00 0.02 0000 --- --- --- --- 048645 01737 3' UTR - 0.00 0.00 0.00 0.00 0.02 0.01 + 1.00 1.00 1.00 1.00 0.98 0.99 0000 --- --- --- --- 049333 02425 3' UTR G 0.63 0.79 0.75 0.77 0.75 0.74 T 0.37 0.21 0.25 0.23 0.25 0.26 0000 --- --- --- --- 049387 02479 3' UTR G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 049923 03015 3' UTR G 0.77 0.96 0.74 0.77 0.75 0.78 A 0.23 0.04 0.26 0.23 0.25 0.22 0000 --- --- --- --- 050206 03298 3' UTR T 0.63 0.80 0.74 0.81 0.75 0.75 C 0.37 0.20 0.26 0.19 0.25 0.25 0000 --- --- --- --- 050824 03916 3' UTR - 0.41 0.23 0.21 0.24 0.26 0.26 + 0.59 0.77 0.79 0.76 0.74 0.74 0000 --- --- --- --- 051204 04296 3' UTR A 0.71 0.79 0.81 0.78 0.73 0.76 C 0.29 0.21 0.19 0.23 0.27 0.24 0000 --- --- --- --- 051375 04467 3' UTR C 0.71 0.79 0.81 0.80 0.73 0.77 T 0.29 0.21 0.19 0.20 0.27 0.23 0000 --- --- --- --- 051913 05005 3' UTR T 0.63 0.79 0.74 0.79 0.75 0.74 C 0.37 0.21 0.26 0.21 0.25 0.26 0000 --- --- --- --- 052141 05233 3' UTR C 0.93 1.00 1.00 1.00 1.00 0.99 T 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 052172 05264 3' UTR T 0.68 0.79 0.74 0.79 0.75 0.75 G 0.32 0.21 0.26 0.21 0.25 0.25 0000 --- --- --- --- 052533 05625 3' UTR A 0.96 1.00 1.00 1.00 1.00 0.99 G 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 052545 05637 3' UTR A 0.73 0.82 0.78 0.82 0.74 0.78 G 0.27 0.18 0.22 0.18 0.26 0.22 0000 --- --- --- --- 052554 05646 3' UTR C 1.00 0.88 1.00 1.00 1.00 0.98 T 0.00 0.12 0.00 0.00 0.00 0.02 0000 --- --- --- --- 052574 05666 3' UTR - 0.00 0.12 0.00 0.00 0.00 0.02 + 1.00 0.88 1.00 1.00 1.00 0.98 0000 --- --- --- --- 052608 05700 3' UTR C 0.73 0.89 0.78 0.79 0.75 0.78 A 0.27 0.11 0.23 0.21 0.25 0.22 0000 --- --- --- --- 052718 05810 3' UTR T 0.73 0.89 0.78 0.79 0.75 0.78 C 0.27 0.11 0.23 0.21 0.25 0.22 0000 --- --- --- --- 053140 06232 3' UTR T 0.82 0.77 0.57 0.52 0.31 0.56 C 0.18 0.23 0.43 0.48 0.69 0.44 0000 --- --- --- --- 053188 06280 3' UTR C 1.00 0.91 1.00 1.00 1.00 0.99 T 0.00 0.09 0.00 0.00 0.00 0.01 0000 --- --- --- --- 053414 06506 3' UTR C 0.68 0.75 0.80 0.79 0.82 0.78 T 0.32 0.25 0.20 0.21 0.18 0.22 0000 --- --- --- --- 053598 06690 3' UTR A 0.54 0.71 0.76 0.76 0.69 0.71 T 0.46 0.29 0.24 0.24 0.31 0.29 0000 --- --- --- --- 053771 06863 3' UTR T 0.77 0.72 0.62 0.53 0.31 0.58 A 0.23 0.28 0.38 0.47 0.69 0.42 0000 --- --- --- --- 054035 07127 3' UTR G 0.68 0.75 0.76 0.79 0.71 0.74 A 0.32 0.25 0.24 0.21 0.29 0.26 0000 --- --- --- --- 054422 07514 3' UTR G 0.91 0.95 0.62 0.52 0.26 0.61 T 0.09 0.05 0.38 0.48 0.74 0.39 0000 --- --- --- --- 054781 07873 3' UTR C 0.65 0.75 0.79 0.82 0.71 0.75 T 0.35 0.25 0.21 0.17 0.29 0.25 0000 --- --- --- --- 055094 08186 3' UTR - 0.00 0.06 0.00 0.03 0.00 0.01 + 1.00 0.94 1.00 0.97 1.00 0.99 0000 --- --- --- --- 055425 00000 ------------ G 0.68 0.77 0.74 0.77 0.75 0.74 T 0.32 0.23 0.26 0.23 0.25 0.26 0000 --- --- --- --- 055635 00000 ------------ A 0.61 0.75 0.74 0.76 0.75 0.73 G 0.39 0.25 0.26 0.24 0.25 0.27 0000 --- --- --- --- 055763 00000 ------------ G 0.71 0.75 0.75 0.74 0.74 0.74 T 0.29 0.25 0.25 0.26 0.26 0.26 0000 --- --- --- --- 056002 00000 ------------ C 1.00 1.00 0.97 0.98 1.00 0.99 T 0.00 0.00 0.03 0.02 0.00 0.01 0000 --- --- --- --- 056070 00000 ------------ C 0.96 1.00 0.82 0.91 0.60 0.83 T 0.04 0.00 0.17 0.09 0.40 0.17 0000 --- --- --- --- 056083 00000 ------------ C 1.00 1.00 0.97 1.00 1.00 0.99 T 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 056141 00000 ------------ G 0.68 0.80 0.72 0.77 0.75 0.74 A 0.32 0.20 0.28 0.23 0.25 0.26 0000 --- --- --- --- 056959 00000 ------------ - 0.08 0.15 0.00 0.03 0.00 0.04 + 0.92 0.85 1.00 0.97 1.00 0.96 0000 --- --- --- --- 057236 00000 ------------ G 0.62 0.78 0.70 0.80 0.74 0.73 A 0.38 0.22 0.30 0.20 0.26 0.27 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 009656: CAAA 019278: GC 019632: T 021612: A 026502: AA 042427: G 048645: A 050824: GTATA 052574: CCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACCTGAGGTCGGGAGGTCGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTGGCTCATGCCTGTAAT 055094: CTGA 056959: TTTCTTTCC