Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000176 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 000229 00000 ------------ A 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 000620 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000980 00000 ------------ G 0.83 1.00 1.00 1.00 1.00 0.97 A 0.17 0.00 0.00 0.00 0.00 0.03 0000 --- --- --- --- 001103 00000 ------------ T 0.83 1.00 1.00 1.00 1.00 0.97 C 0.17 0.00 0.00 0.00 0.00 0.03 0000 --- --- --- --- 001491 00000 ------------ G 0.93 1.00 1.00 1.00 1.00 0.99 T 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001492 00000 ------------ A 0.93 1.00 1.00 1.00 1.00 0.99 T 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001788 00000 ------------ A 0.73 0.92 0.89 1.00 1.00 0.92 G 0.27 0.08 0.11 0.00 0.00 0.08 0000 --- --- --- --- 001876 00000 ------------ G 0.97 1.00 0.89 1.00 1.00 0.97 C 0.03 0.00 0.11 0.00 0.00 0.03 0000 --- --- --- --- 001991 00042 5' UTR G 0.97 1.00 0.93 1.00 1.00 0.98 C 0.03 0.00 0.07 0.00 0.00 0.02 0000 --- --- --- --- 002149 00000 ------------ C 1.00 0.88 1.00 1.00 1.00 0.98 T 0.00 0.12 0.00 0.00 0.00 0.02 0000 --- --- --- --- 002198 00000 ------------ C 1.00 1.00 0.89 1.00 1.00 0.98 T 0.00 0.00 0.11 0.00 0.00 0.02 0000 --- --- --- --- 002833 00000 ------------ A 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 003264 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 003848 00677 5' UTR T 1.00 1.00 0.94 1.00 1.00 0.99 G 0.00 0.00 0.06 0.00 0.00 0.01 0000 --- --- --- --- 003925 00754 5' UTR T 1.00 1.00 0.94 1.00 1.00 0.99 G 0.00 0.00 0.06 0.00 0.00 0.01 0000 --- --- --- --- 003926 00755 5' UTR - 0.03 0.00 0.14 0.00 0.00 0.04 + 0.97 1.00 0.86 1.00 1.00 0.96 0000 --- --- --- --- 003985 00814 5' UTR G 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004021 00850 5' UTR T 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004243 01072 5' UTR - 0.03 0.00 0.00 0.00 0.00 0.01 + 0.97 1.00 1.00 1.00 1.00 0.99 0000 --- --- --- --- 004264 01093 5' UTR T 0.96 1.00 0.88 1.00 1.00 0.97 C 0.04 0.00 0.12 0.00 0.00 0.03 0000 --- --- --- --- 005679 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 005877 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 006359 00000 ------------ A 0.93 0.92 1.00 1.00 1.00 0.98 G 0.07 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 006361 00000 ------------ G 0.93 0.92 1.00 1.00 1.00 0.98 A 0.07 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 006618 00000 ------------ T 1.00 1.00 0.98 1.00 1.00 0.99 C 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 006700 00000 ------------ A 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 006758 00000 ------------ C 0.97 1.00 0.89 1.00 1.00 0.97 T 0.03 0.00 0.11 0.00 0.00 0.03 0000 --- --- --- --- 006810 00000 ------------ G 0.40 0.68 0.80 1.00 1.00 0.82 C 0.60 0.32 0.20 0.00 0.00 0.18 0000 --- --- --- --- 006824 00000 ------------ T 0.93 1.00 0.95 1.00 1.00 0.98 G 0.07 0.00 0.05 0.00 0.00 0.02 0000 --- --- --- --- 006829 00000 ------------ T 1.00 1.00 1.00 0.89 1.00 0.97 G 0.00 0.00 0.00 0.11 0.00 0.03 0000 --- --- --- --- 007092 00000 ------------ A 0.97 1.00 0.98 1.00 1.00 0.99 G 0.03 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 007273 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 015907 00000 ------------ C 0.81 0.95 0.68 0.60 0.50 0.67 T 0.19 0.05 0.32 0.40 0.50 0.33 0000 --- --- --- --- 016145 00000 ------------ T 0.92 1.00 0.88 1.00 0.97 0.95 G 0.08 0.00 0.12 0.00 0.03 0.05 0000 --- --- --- --- 016333 00000 ------------ C 0.95 1.00 0.88 1.00 1.00 0.96 T 0.05 0.00 0.12 0.00 0.00 0.04 0000 --- --- --- --- 016338 00000 ------------ A 1.00 1.00 1.00 0.97 1.00 0.99 T 0.00 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- 016570 00000 ------------ T 0.83 0.86 1.00 1.00 1.00 0.96 C 0.17 0.14 0.00 0.00 0.00 0.04 0000 --- --- --- --- 016640 00000 ------------ T 1.00 0.91 1.00 1.00 1.00 0.99 C 0.00 0.09 0.00 0.00 0.00 0.01 0000 --- --- --- --- 016968 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 016970 00000 ------------ - 0.00 0.00 0.00 0.02 0.00 0.01 + 1.00 1.00 1.00 0.98 1.00 0.99 0000 --- --- --- --- 017318 00000 ------------ A 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 017731 00000 ------------ T 0.87 0.96 0.93 1.00 1.00 0.96 C 0.13 0.04 0.07 0.00 0.00 0.04 0000 --- --- --- --- 017901 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 017908 00000 ------------ A 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 018573 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 018649 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 018654 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 019486 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 019512 00000 ------------ - 0.00 0.00 0.00 0.23 0.08 0.07 + 1.00 1.00 1.00 0.77 0.92 0.93 0000 --- --- --- --- 019720 00000 ------------ T 1.00 1.00 1.00 0.95 0.96 0.98 C 0.00 0.00 0.00 0.05 0.04 0.02 0000 --- --- --- --- 019869 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 020228 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 020302 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 020377 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 020418 00000 ------------ A 0.90 1.00 0.86 1.00 1.00 0.95 G 0.10 0.00 0.14 0.00 0.00 0.05 0000 --- --- --- --- 020569 00000 ------------ A 1.00 1.00 0.95 0.82 1.00 0.94 G 0.00 0.00 0.05 0.18 0.00 0.06 0000 --- --- --- --- 020761 00000 ------------ - 0.93 0.83 1.00 1.00 1.00 0.97 + 0.07 0.17 0.00 0.00 0.00 0.03 0000 --- --- --- --- 021037 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 021054 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 A 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 021139 00000 ------------ A 1.00 1.00 1.00 0.98 1.00 0.99 G 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 021173 00000 ------------ C 0.97 1.00 0.89 1.00 1.00 0.97 T 0.03 0.00 0.11 0.00 0.00 0.03 0000 --- --- --- --- 021174 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 T 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 021329 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 021333 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 021377 00000 ------------ T 0.90 1.00 0.86 1.00 1.00 0.95 C 0.10 0.00 0.14 0.00 0.00 0.05 0000 --- --- --- --- 021467 00000 ------------ A 1.00 1.00 1.00 1.00 0.96 0.99 G 0.00 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- 021570 00000 ------------ C 0.97 1.00 0.95 1.00 0.98 0.98 T 0.03 0.00 0.05 0.00 0.02 0.02 0000 --- --- --- --- 021706 00000 ------------ G 0.93 1.00 0.86 1.00 1.00 0.96 A 0.07 0.00 0.14 0.00 0.00 0.04 0000 --- --- --- --- 021729 00000 ------------ T 1.00 1.00 0.98 1.00 1.00 0.99 C 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 022076 00000 ------------ C 0.97 0.96 1.00 1.00 1.00 0.99 A 0.03 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 022082 00000 ------------ T 1.00 1.00 0.90 1.00 1.00 0.98 C 0.00 0.00 0.10 0.00 0.00 0.02 0000 --- --- --- --- 022113 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 022147 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 022223 00000 ------------ G 0.93 1.00 0.86 1.00 1.00 0.96 A 0.07 0.00 0.14 0.00 0.00 0.04 0000 --- --- --- --- 022593 00000 ------------ A 0.96 1.00 0.83 1.00 1.00 0.96 G 0.04 0.00 0.17 0.00 0.00 0.04 0000 --- --- --- --- 022907 00000 ------------ - 0.00 0.00 0.00 0.09 0.00 0.02 + 1.00 1.00 1.00 0.91 1.00 0.98 0000 --- --- --- --- 023258 02758 NON-SYN G 0.93 1.00 1.00 1.00 1.00 0.99 A 0.07 0.00 0.00 0.00 0.00 0.01 0453 ATG ATA MET(M) ILE(I) 023660 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 031076 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 031145 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 031347 00000 ------------ G 0.93 1.00 0.89 1.00 1.00 0.96 A 0.07 0.00 0.11 0.00 0.00 0.04 0000 --- --- --- --- 031473 00000 ------------ T 0.96 1.00 1.00 1.00 0.98 0.99 A 0.04 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 031662 00000 ------------ C 0.87 0.96 0.93 1.00 1.00 0.96 G 0.13 0.04 0.07 0.00 0.00 0.04 0000 --- --- --- --- 031672 00000 ------------ A 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 031914 00000 ------------ C 0.80 0.92 0.89 1.00 1.00 0.93 T 0.20 0.08 0.11 0.00 0.00 0.07 0000 --- --- --- --- 031930 00000 ------------ T 0.97 0.96 0.98 1.00 0.92 0.96 G 0.03 0.04 0.02 0.00 0.08 0.04 0000 --- --- --- --- 032363 02916 NON-SYN C 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0506 GCG GTG ALA(A) VAL(V) 032519 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 032597 03044 NON-SYN C 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0549 CCA TCA PRO(P) SER(S) 032677 00000 ------------ A 1.00 1.00 1.00 0.98 1.00 0.99 G 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 032936 03292 3' UTR G 0.93 0.83 1.00 1.00 1.00 0.97 A 0.07 0.17 0.00 0.00 0.00 0.03 0000 --- --- --- --- 033097 03453 3' UTR G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 033138 03494 3' UTR - 0.93 1.00 0.89 1.00 1.00 0.96 + 0.07 0.00 0.11 0.00 0.00 0.04 0000 --- --- --- --- 033776 00000 ------------ C 0.97 1.00 1.00 0.98 1.00 0.99 G 0.03 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 034053 00000 ------------ C 0.97 1.00 0.92 1.00 1.00 0.98 T 0.03 0.00 0.08 0.00 0.00 0.02 0000 --- --- --- --- 034086 00000 ------------ C 0.93 1.00 0.91 1.00 1.00 0.97 T 0.07 0.00 0.09 0.00 0.00 0.03 0000 --- --- --- --- 034103 00000 ------------ T 1.00 1.00 0.97 0.97 1.00 0.99 C 0.00 0.00 0.03 0.03 0.00 0.01 0000 --- --- --- --- 034149 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 034272 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 G 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 034298 00000 ------------ A 1.00 0.95 1.00 1.00 1.00 0.99 G 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 034330 00000 ------------ C 0.93 0.92 1.00 1.00 1.00 0.98 T 0.07 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 034357 00000 ------------ T 1.00 1.00 0.98 1.00 1.00 0.99 G 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 034372 00000 ------------ C 0.87 0.92 1.00 1.00 1.00 0.97 T 0.13 0.08 0.00 0.00 0.00 0.03 0000 --- --- --- --- 034515 00000 ------------ A 0.93 1.00 0.89 1.00 1.00 0.96 G 0.07 0.00 0.11 0.00 0.00 0.04 0000 --- --- --- --- 034526 00000 ------------ G 0.93 1.00 1.00 1.00 1.00 0.99 A 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 034589 00000 ------------ A 0.97 1.00 0.86 1.00 1.00 0.96 C 0.03 0.00 0.14 0.00 0.00 0.04 0000 --- --- --- --- 034910 00000 ------------ A 0.93 1.00 1.00 1.00 1.00 0.99 G 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 034984 00000 ------------ T 1.00 1.00 0.98 1.00 1.00 0.99 C 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 003926: C 004243: TG 016970: T 019512: CTGGAAAATAGGAAGGAGAGTAC 020761: T 022907: C 033138: GG