LOCUS TNFRSF4 6620 bp DNA linear PRI 07-JUL-2005 DEFINITION Homo sapiens TNFRSF4: tumor necrosis factor receptor superfamily, member 4 (TNFRSF4) gene, complete cds. ACCESSION TNFRSF4 VERSION tmp KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6620) AUTHORS Livingston,R.J., Rieder,M.J., Shaffer,T., Bertucci,C., Baier,C.N., Rajkumar,N., Willa,H.T.., Daniels,M., Downing,T.K., Stanaway,I.B., Nguyen,C.P., Gildersleeve,H., Cassidy,C.M., Johnson,E.J., Swanson,J.E., McFarland,I., Yool,B., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (07-JUL-2005) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..6620 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" gene 1..4836 /gene="TNFRSF4" variation 90..92 /gene="TNFRSF4" /frequency="0.01" /replace="" variation 208 /gene="TNFRSF4" /frequency="0.03" /replace="A" variation 276 /gene="TNFRSF4" /frequency="0.18" /replace="G" variation 653 /gene="TNFRSF4" /frequency="0.02" /replace="G" variation 657..660 /gene="TNFRSF4" /frequency="0.01" /replace="" variation 744 /gene="TNFRSF4" /frequency="0.02" /replace="T" variation 974 /gene="TNFRSF4" /frequency="0.01" /replace="G" variation 1060 /gene="TNFRSF4" /frequency="0.09" /replace="G" variation 1070 /gene="TNFRSF4" /frequency="0.02" /replace="A" variation 1103 /gene="TNFRSF4" /frequency="0.01" /replace="T" repeat_region 1123..1217 /rpt_family="MaLR" /rpt_type=dispersed variation 1221 /gene="TNFRSF4" /frequency="0.01" /replace="T" variation 1260 /gene="TNFRSF4" /frequency="0.01" /replace="T" repeat_region 1266..1561 /rpt_family="Alu" /rpt_type=dispersed variation 1297 /gene="TNFRSF4" /frequency="0.10" /replace="T" variation 1327 /gene="TNFRSF4" /frequency="0.10" /replace="G" variation 1471 /gene="TNFRSF4" /frequency="0.07" /replace="G" variation 1741 /gene="TNFRSF4" /frequency="0.01" /replace="T" variation 1847 /gene="TNFRSF4" /frequency="0.01" /replace="A" variation 1901 /gene="TNFRSF4" /frequency="0.01" /replace="A" mRNA join(1996..2145,2343..2465,3035..3136,3424..3490, 4024..4220,4330..4458,4537..4836) /gene="TNFRSF4" /product="TNFRSF4" CDS join(2001..2145,2343..2465,3035..3136,3424..3490, 4024..4220,4330..4458,4537..4607) /gene="TNFRSF4" /codon_start=1 /product="TNFRSF4: tumor necrosis factor receptor superfamily, member 4" /translation="MCVGARRLGRGPCAALLLLGLGLSTVTGLHCVGDTYPSNDRCCH ECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTAT QDTVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNCTLAGKHTLQPASN SSDAICEDRDPPATQPQETQGPPARPITVQPTEAWPRTSQGPSTRPVEVPGGRAVAAI LGLGLVLGLLGPLAILLALYLLRRDQRLPPDAHKPPGGGSFRTPIQEEQADAHSTLAK I" variation 2028 /gene="TNFRSF4" /frequency="0.01" /replace="T" variation 2192 /gene="TNFRSF4" /frequency="0.09" /replace="C" variation 2508 /gene="TNFRSF4" /frequency="0.01" /replace="T" variation 2613 /gene="TNFRSF4" /frequency="0.01" /replace="A" variation 2653 /gene="TNFRSF4" /frequency="0.01" /replace="T" variation 2687 /gene="TNFRSF4" /frequency="0.02" /replace="T" variation 2783 /gene="TNFRSF4" /frequency="0.04" /replace="T" variation 3063 /gene="TNFRSF4" /frequency="0.01" /replace="T" variation 3150 /gene="TNFRSF4" /frequency="0.04" /replace="T" variation 3230 /gene="TNFRSF4" /frequency="0.10" /replace="A" variation 3408 /gene="TNFRSF4" /frequency="0.05" /replace="G" variation 3523..3555 /gene="TNFRSF4" /frequency="0.88" /replace="" variation 3556 /gene="TNFRSF4" /frequency="0.79" /replace="" variation 3563 /gene="TNFRSF4" /frequency="0.01" /replace="C" variation 3772 /gene="TNFRSF4" /frequency="0.07" /replace="T" variation 3887 /gene="TNFRSF4" /frequency="0.05" /replace="T" variation 4120 /gene="TNFRSF4" /frequency="0.49" /replace="A" variation 4245 /gene="TNFRSF4" /frequency="0.08" /replace="T" variation 4299 /gene="TNFRSF4" /frequency="0.08" /replace="G" variation 4518 /gene="TNFRSF4" /frequency="0.01" /replace="T" variation 4577 /gene="TNFRSF4" /frequency="0.01" /replace="T" variation 4619 /gene="TNFRSF4" /frequency="0.01" /replace="A" variation 4689 /gene="TNFRSF4" /frequency="0.04" /replace="T" variation 4757 /gene="TNFRSF4" /frequency="0.03" /replace="G" variation 4832 /gene="TNFRSF4" /frequency="0.01" /replace="T" variation 4846 /frequency="0.05" /replace="A" variation 4998 /frequency="0.01" /replace="A" variation 5124 /frequency="0.01" /replace="A" variation 5143 /frequency="0.03" /replace="A" variation 5203 /frequency="0.01" /replace="T" variation 5266 /frequency="0.02" /replace="A" variation 5292 /frequency="0.01" /replace="T" variation 5531 /frequency="0.05" /replace="T" variation 5624 /frequency="0.01" /replace="C" variation 5771 /frequency="0.01" /replace="T" variation 5776 /frequency="0.08" /replace="C" variation 5785 /frequency="0.01" /replace="C" variation 5841 /frequency="0.01" /replace="T" repeat_region 6034..6337 /rpt_family="Alu" /rpt_type=dispersed variation 6075 /frequency="0.09" /replace="C" variation 6101 /frequency="0.09" /replace="C" variation 6131 /frequency="0.09" /replace="T" variation 6199 /frequency="0.01" /replace="T" repeat_region 6373..6601 /rpt_family="Alu" /rpt_type=dispersed variation 6474 /frequency="0.01" /replace="C" BASE COUNT 1102 a 2096 c 2215 g 1207 t ORIGIN 1 atgctgtgct ggacatgaag gcggggggac agctgggtat gtggtggcac ctggcccttc 61 agaggcccca gccagctcca gtctggtact ggaggagcag tggccactca tgggctgccc 121 tgtgccgccc gcgacactac tgtgtggagc ggggagccca gctcctgggg atgtggttcg 181 agctgcaggc tgccttacag accttggggg tcctgagctc tgggtcagtg tccagcctcc 241 tgtggccacg ccacacccgg ttccatggac acagcagggc tttcttggac ctgtgacctt 301 aagcccagga caaggagacc tgagcttcct gggcagcttc aagcaggagg ggccgtgccc 361 catcctgggg ccattgcagt tgccagcaat atgctggggg tgccctctcc atggtgcacg 421 ggccccactc actgcacctg tgggcagatg tggccactta ggccccagga gagcagtgtt 481 gcccaccaag acccccagtt cacctgaacc tccaaggaac caattgcaaa tgtaagcttt 541 ttctcactgt cagtgggaaa cccttgtgaa cgctgggtgg aaccttccac aaaatgccag 601 aactttcctc ctctgcccac ctgggttggg gtgtgcacat gcaggtacac acactgtctg 661 ggatgctctg agcccttcca gggtcctctc tacttgtggg gacgtgggga gggtgaccaa 721 cttagggacc ctcagtccga gggcgggtgg cctctccctc cactccctcc ctctccaggg 781 ccagcgggct ccacggctgg gaatttcccc acgggtgggc cgaggacagg cagctgtttc 841 ctgtgctcct gggaggaggg gatttccagc cccttccctg ctgctctgtt cctagaggcc 901 cctctccact tgcaacttca aaaatgaact tttggataat cacaggctgg tcacagttat 961 ttgaaaggtg cagaaagggc ccagggagcc cccagccccg cacctgctcc ccagctctcc 1021 gggcagttcg catcctctgg gcaaacctgg aacctgagaa ctgtttgcat agaaggtgga 1081 aacctgcctg cgtgcccgtg tgcgccaggc catccaggac ccaccctcac cacctcctca 1141 gaggcctgtc tccaaacact gccacatggg ggttagggct tccacgcagg aatttaaggg 1201 gcacagttca gccatagaca cctgccgtgc tcaggcacac tcagcgtggg ctgtggtcac 1261 gggtgtcttt tttttttttt ttgagatgag tctcgccctg tcgcccaggc tggagtgcag 1321 tggcgccacc tctgctttgc aacttctgtc tcctgggttc gagtgattct gctacctcag 1381 cctcctgact agctgggatt accggcgccc gccaccacgc ccgaataatt tttgtagttt 1441 tagtagagac gggatttcgc catgttagcc agactggtct tgaactcctg acctcaggtg 1501 atccacccgc cttggcctcc caaagtgctg ggattacagg cgggagccac cgtgcctggc 1561 catgggtgtc tgtcttacca tggctgtggt cactgctgct cagagctagt cttgggcata 1621 caagggggac catgcttcag cagtgccaca gccctgaagg tccagactga ggagttgcct 1681 ctcctgactc agtgctgcct cagtttaccc acgtgctcca tggacctttt tgctgagggt 1741 cgagccgcag gccaggccct actgtgccct ggggtctgaa cacggtggtc ttgggcagaa 1801 gaggtcagaa ggcagaataa gccaatgctg ggggtgccca gaccccgcct ttgtgcccag 1861 cccacagcca gggtccccgg cctgccacct tcctcctccc gcctcctctg ccctcctccc 1921 ctctcccctc ccctcctcca cagtccttat agccacaccc cgcaaggaaa acccagactc 1981 tggcgacagc agagacgagg atgtgcgtgg gggctcggcg gctgggccgc gggccgtgtg 2041 cggctctgct cctcctgggc ctggggctga gcaccgtgac ggggctccac tgtgtcgggg 2101 acacctaccc cagcaacgac cggtgctgcc acgagtgcag gccaggtgag gcctcaggag 2161 gggtcgccac gcacgggcac tccagggact gggggctggg gcagggatgg gccagccagg 2221 aggctggtcc tggggagggg gcgggtgagg ggccggccaa gcctggcaga ggagccgcct 2281 gggggggtcc acgggcgcaa gcctggggcc tgaccgctgc ctgacgccgg cctctgctgc 2341 aggcaacggg atggtgagcc gctgcagccg ctcccagaac acggtgtgcc gtccgtgcgg 2401 gccgggcttc tacaacgacg tggtcagctc caagccgtgc aagccctgca cgtggtgtaa 2461 cctcagtgag ctcccacctg gccccacagc cccacccagc acagggggcg gcagcctggc 2521 acccacattc ccacgcagca gcatggggct cccacagccg cagaaacgaa cctcaaacca 2581 cagcggggtc tgctccgcca caggggtcct tcgaggagct gaggcgtctc ccaggggcac 2641 cccctctccc tccgggggcc cagactcggc ccaggccacg tggagtcggg gagaccacgc 2701 tggccatgtg gcctggcctt gctggcctga gcagtgaggc tggggggttg ggccatggag 2761 accctgccgc aggcggggct ggcggctgga ggcggtggag gggtagggaa gggtggctgg 2821 ggctgccacg gaaccagccc caggttgtgg ccaggaaggg agggcccagg agcctcgggg 2881 gctgcagggg ctccaagtct caggggaggc cgcagacccc tgcccacggc cctctgtgtg 2941 gtggggaggc caacctgtcc tccagtgccc acgcttcctg aggaccctgt ccacagcccc 3001 cacctgacca cccccccatc cggcccctgc tcaggaagtg ggagtgagcg gaagcagctg 3061 tgcacggcca cacaggacac agtctgccgc tgccgggcgg gcacccagcc cctggacagc 3121 tacaagcctg gagttggtga gctcggtggc tgcggccggc ggttgggggt gtgcatagcg 3181 gctgtctgtg acgcagatgg gccgtgggcc gcagggacct ggccccaccg gtgcctcctc 3241 tggcatcctc aagaccgagc tcccgggtca gggcccacgg gtgggatgtg ggcagggagg 3301 gcttccagag gccaaaccca ccacccagcc atggggggca agtgcctgcc ccacaggctc 3361 tgccccatgt ccccagcacc cggggcctgt gggcagcccc tgaccaccct atctttgttg 3421 cagactgtgc cccctgccct ccagggcact tctccccagg cgacaaccag gcctgcaagc 3481 cctggaccaa gtgaggggcc tggccagggg ctgggagggg cttgaggggg cagaggggcc 3541 aggggctgga gggctggggg gggggttggg gtggttagga gggcggagga gctggggagc 3601 tgggaggggc tgggggggca ggtggggtgg gggcagtttt gggggaaggg gaggtgctgg 3661 tggccctggg ggcctggcta tgtggctgga cctggttggg gagcaggaag ctgctgcctg 3721 ggggcagcct ttccctgtgg gtggagctgg gtgtgtggga ccctcaccct ccgcagctgg 3781 gaggccctgg gggcacagga cagggaggtg ctggtggggg gtgtagatgt gggagaaggg 3841 tgtgtggcct tggaggcccc tgtggggggc acgtggggct gggcagcgtc cttggctgtc 3901 actggcctgg tgtctgtggt agatgctgcc tgtggctggc cagcgtggac cctgttatcc 3961 ccaccgcatc tcccgggtcc cagggggttt ctggcctgag caacacctcc tgttccccaa 4021 cagctgcacc ttggctggga agcacaccct gcagccggcc agcaatagct cggacgcaat 4081 ctgtgaggac agggaccccc cagccacgca gccccaggag acccagggcc ccccggccag 4141 gcccatcact gtccagccca ctgaagcctg gcccagaacc tcacagggac cctccacccg 4201 gcccgtggag gtccccgggg gtaagggcgc ctggcccagc ccagcggggc ccccaacccg 4261 aataggagaa ggggagggcg gcatgggggc ccctcctgtg gaccccaccc agcagacccc 4321 ttcctgcagg ccgtgcggtt gccgccatcc tgggcctggg cctggtgctg gggctgctgg 4381 gccccctggc catcctgctg gccctgtacc tgctccggag ggaccagagg ctgccccccg 4441 atgcccacaa gccccctggt gagtgcctca tggccctgcc gcactgctcc tggcgggtga 4501 ggcccaccca ccaatctctc cttttttcct ccccaggggg aggcagtttc cggaccccca 4561 tccaagagga gcaggccgac gcccactcca ccctggccaa gatctgacct gggcccacca 4621 aggtggacgc tgggccccgc caggctggag cccggagggt ctgctgggcg agcagggcag 4681 gtgcaggccg cctgccccgc cacgctcctg ggccaactct gcaccgttct aggtgccgat 4741 ggctgcctcc ggctctctgc ttacgtatgc catgcatacc tcctgccccg cgggaccaca 4801 ataaaaacct tggcagacgg gagtctccga ccggcactgt gggctgcaca cctgtggcat 4861 ggaggcttgg gccgtgcccg cctctgactg gagaggggtc ttgggaggct tgggccgtgc 4921 ccgcctctgg ctggacaggg gtcttgggag gcttgggccg tgcccgcctc tggctggaga 4981 ggggtcttgg gagacttggg ccgtgccaac ctgtggctgg aaaggggtct tgggagactt 5041 gggccgtgcc aacctgtggc tggagagggg tcttgggaga cttgggctgt gccaacctgt 5101 ggctggagag gggtcttggg ccagggtgga ggtgagggta gcggggtcaa gtgggaccct 5161 ggaggttggt ccctgggtgc gagttccaga ttgagtgggg agcgggggga gagactggga 5221 aagctcaggc ccaaggctgc ctggggtgga ggttcctggc caggcgctga caagggcagc 5281 tggcccctga gccccgggtt gcccaaggag cttgggagtg gctgaccccc ggggctctgt 5341 gtccttggag gaggagtgta gagacctgcc cctcttcccc tccacaccta cgcccacccc 5401 ttgctgcacc tggaaggggg tcccagggcc cctgagcacc ccgaggagtc cctgcaaagg 5461 gcccacacgg cccctatgtc cctgccatag gtgtccaggg ggacagtcac cttggaaacc 5521 acagtttctg cttgagccaa ctttctgtcc accctgggcc ccggccgtcc cactcctgcg 5581 cacttaagag tcctgggatc tgaatgagaa tgaccacagc gacttcatgt aacgtggccc 5641 cacagtggag aaacccaggc atccgccagc agcgtggatg cgcgagtgct ggcgtgttca 5701 gatgagctcc cagctcctcg gcccacacca caggtgtcca cagacgctcc caaggccctg 5761 gggccgtccc cggccgtgcg ggaatcttct caagctggtg tctgggagtg gggtatcctt 5821 cgagcagcac agagcctgct cccgagcgcc agtcacgccc gaggccacag ctcgggaaca 5881 aggcgggagc agccctgcag gcttcccgca gggaagacac cccgggcgtc taagcgacat 5941 ctgtgtccct cgggaggcgg aggtgcctgt tcgcctccat ggtgtcaggg gctgaagaga 6001 aacactcccg agggctaaga cgtctcactg cacttgtttt ttctttcttt tttttttttt 6061 gccggagtct tgctgtgtca cccaggctgg agtgcagtgg tgtgatctca gctcaccaac 6121 ctctgcctcc cgggttcacg ccattctcct gcctcagcct cccaagtagc tgggactaca 6181 ggcgcccagc accacacccg gctaattttt gtattttatt agagacaggg tttcaccatg 6241 ttggctaagc tggtcttgaa ctcctgacct caggtgatcc acctgcctcg gtgccctgga 6301 gtactgcgat tccaggtgtg agccaccacg cctggccctc actgcactca tgagcaagaa 6361 acacacagcc gaggccggtc acggtggctc acgcctagaa tcctagcact ttgggaggct 6421 gaggccagac gatcgtctga gctcaggagt ttgagacccg cctgggtaac atggcaagac 6481 ccttttctat gaaaaataga aaaaatcagc cgggtgtggt ggtgcatgcc tgtggtcccg 6541 gctacttggg aggccgaggt gggaggatca cttgagccca agagatggag gctgcagtga 6601 gacgtgactg gaaaaaaaaa //