************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 tnf1b.phase.inp tnf1b.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST tnf1b.phase.out_freqs : haplotype frequency estimates tnf1b.phase.out_pairs : most likely haplotype pairs for each individual tnf1b.phase.out_recom : estimates of recombination parameters tnf1b.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 90 Number of Loci: 56 Positions of loci: 225 1692 7713 7968 8661 13995 15582 15730 16761 16897 21914 22216 23147 23197 23331 23409 23848 23871 23926 23937 24138 24474 24549 24676 24735 24771 24894 25343 25794 26097 26224 26690 26733 27817 27880 28276 29126 30286 36899 37225 37353 37616 37617 37719 41518 41539 42192 42219 42395 42930 42959 43434 43506 43656 44267 44882 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file tnf1b.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 TITGCGGGTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCTDGAGAG 1.000000 2 TITGCGGGTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 1.000000 3 TITGCGGGTGGADCAAGGTG 1 ATAGCAATAAGGTGCAAAGCGAAAGGTATDGAGAG 1.000000 4 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTGCTTGAAGCGAAAAACCCDGAGAA 1.000000 5 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 8.000000 6 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAG 1.000000 7 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGGG 2.000000 8 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAATCTDGAGAG 3.000000 9 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAATCTDAAGAG 1.000000 10 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAATCCDGAGAA 1.000000 11 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAATCCDGAGAG 1.000000 12 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAGCCCDGAGAA 6.000000 13 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAGCCCDGAGGG 1.000000 14 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTATDGAGAG 1.000000 15 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTCCDGAGAG 1.000000 16 TITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAGACCCDGAGAA 1.000000 17 TITGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 2.000000 18 TITGCGGTTGCGIGTGAACG 4 AAGAGGGTTGTGCTTGAAGCGAAAAACCCDGAGAA 6.000000 19 TITGTGGTTACAICAGGGTG 1 CTAGCAATAAGGTGCAAAGCGAAAGACCCDGAGAA 1.000000 20 TITGTGGTTACGIGTGAACG 4 AAGAGGGTTGTGCTTGAAGCGAAAAACCTDAAGAG 1.000000 21 TITGTGGTTACGIGTGAACG 4 AAGAGGGTTGTGCTTGAAGCGAAAAATATDGAGAG 1.000000 22 TITGTGGTTACGIGTGAACG 4 AAGAGGGTTGTGCTTGAAGCGAAAAATCTDAAGAG 1.000000 23 TITGTGGTTACGIGTGAACG 4 AAGAGGGTTGTGCTTGAAGCGAAAAGTATDGAGAG 1.000000 24 TITGTGGTTACGIGTGAACG 4 AAGAGGGTTGTGCTTGAAGCGAAAAGTCCDGAGAA 1.000000 25 TITGTGGTTACGIGTGAACG 4 AAGAGGGTTGTGCTTGAAGCGAAAAGTCCDGAGAG 1.000000 26 TITGTGGTTACGIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCTDGAGAG 1.000000 27 TITGTGGTTACGIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 1.000000 28 TITGTGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAATCTDGAGAG 1.000000 29 TITGTGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTACIGGAGG 1.000000 30 TITGTGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTCCDGAGAA 1.000000 31 TITGTGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAGAACACIGGAGG 1.000000 32 TITGTGGTTGCAIGTGAACA 4 AAGAGGGTTGTGCTTGAAGCGAAAAACCCDGAGAA 1.000000 33 TITGTGGTTGCAIGTGAACA 4 AAGAGGGTTGTGCTTGAAGCGAAAAACCCDGAGAG 1.000000 34 TITGTGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCTDGAGAG 2.000000 35 TITGTGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 8.000000 36 TITGTGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAG 1.000000 37 TITGTGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAATCCDGAGAA 1.000000 38 TITGTGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGCCCDGAGAA 3.000000 39 TITGTGGTGACAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCTDAAGAG 2.000000 40 TITGTGGTGACAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTCTDGAGAG 1.000000 41 TITGTGGTGGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTCTDAAGAG 1.000000 42 TITGTGGTGGCAIGTGAACA 4 AAGAGGGCTGTTCTTGAAGCGAAAAGCCCDGAGAA 1.000000 43 TITGTGGTGGCAIGTGAACA 4 AAGAGGGCTGTTCTTGAAGCGAAAAGTCTDAAGAG 2.000000 44 TITGTGGTGGCAIGTGAACA 4 AAGAGGGCTGTTCTTGAAGCGAAAAGTCCDGAGAA 2.000000 45 TITGTGGTGGGADCAAGGTG 1 ATAGCAATAAGGTGCACGATACGGGGTCCDGAGAA 1.000000 46 TITGTGAGTGGADCAAGGTG 1 ATAGCAATAAGGTGCACGATACGGGGTCTDGAGAG 1.000000 47 TITATGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 1.000000 48 TITATGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 1.000000 49 TITATGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGCCCDGAGAA 1.000000 50 TITATGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTATDGAGAG 2.000000 51 TICGCGGTTGCAIGTGAACG 4 AAAAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 1.000000 52 TICGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 1.000000 53 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCTDGAGAG 3.000000 54 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 11.000000 55 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCIGGAGG 1.000000 56 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAATACIGGAGG 5.000000 57 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGCCTDAAGAG 1.000000 58 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGCCCDGAGAA 3.000000 59 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTACIGGAGG 2.000000 60 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTCTDAAGAG 1.000000 61 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTCCDGAGAA 9.000000 62 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGTACGGGATCTDGAGAG 1.000000 63 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGTACGGGATCTDAAGAG 1.000000 64 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGTACGGGGCCCDGAGAA 1.000000 65 TICGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGTACGGGGTCCDGAGAG 1.000000 66 TICGCGGTTGCAIGTGAACA 4 AAGAGGGCTGTTCTTGAAGCGAAAAACCCDGAGAA 1.000000 67 TICGCGGTTGCAIGTGAACA 4 AAGAGGGCTGTTCTTGAAGCGAAAAGTCCDGAGAA 1.000000 68 TICGCAGGGACAICAGGGTG 1 CTAGCAATTAGGTGCAAAGCGAAAGACCTDGAGAG 1.000000 69 TDTGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACATDGAGAG 1.000000 70 TDTGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAACGAAGAACCCDGAGAA 3.000000 71 TDTGCGAGTACGIGTGAACG 4 AAGAGGGTTGTGCTTGAAGCGAAAAACCTDGAGAG 1.000000 72 TDTGCGAGTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 1.000000 73 TDTGCGAGTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 1.000000 74 TDTGCGAGTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTCCDGAGAA 1.000000 75 TDTGCGAGTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAGATACGAAGCCCDGAGAA 1.000000 76 TDTGCGAGTGCAIGTGAACA 4 AAGAGGGCTGTTCTTGAAGCGAAGGACCTDAAGAG 1.000000 77 TDTGCGAGTGGADCAAAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTCCDGAGAA 1.000000 78 TDTGCGAGTGGADCAAGGTG 1 ATAGCAATAAGGTGCACGATACGAAGTCCDGAGAA 2.000000 79 TDTGCGAGTGGADCAAGGTG 1 ATAGCAATAAGGTGCACGATACGGAGTATDGAGAG 1.000000 80 TDTGCGAGTGGADCAAGGTG 1 ATAGCAATAAGGTGCACGATACGGGGCCCDGAGAA 1.000000 81 TDTGCGAGTGGADCAAGGTG 1 ATAGCAATAAGGTGCACGATACGGGGTATIGAAGG 1.000000 82 TDTGCGAGTGGADCAAGGTG 1 ATAGCAATAAGGTGCACGATACGGGGTCTDAAGAG 1.000000 83 TDTGCGAGTGGADCAAGGTG 1 ATAGCAATAAGGTGCACGATACGGGGTCCDGAGAA 2.000000 84 TDTGCGAGTGGADCAAGGTG 1 ATAGCAATAAGGTGTACGATACGAAGTCCDGAGAA 2.000000 85 TDTGCAGGTACAICAGGGTG 2 CTAGCAATTGGGTGTGCGACAAAAGGCCCDGAGAA 1.000000 86 TDTACGAGTACGIGTGAACG 4 AAGAGGGTTGGGCTTGAAGCGAAAAGTCTDGAGAG 1.000000 87 TDTATGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGTACAAAACCCDGAGAA 1.000000 88 TDTATGGTTGGADCAAGGTG 1 ATAGCAATTGTTCTTGAAGCGAAAAACCCDGAGAA 1.000000 89 TDCGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAACCCDGAGAA 1.000000 90 TDCGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAATCCDGAGAA 1.000000 91 TDCGCGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTCCDGAGAA 3.000000 92 AITGCGGTTGCAICAGGGCG 4 ATGAGGATTGGGTGCGAAACGAAAAACCTDGAGAG 1.000000 93 AITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAACATDGAGAG 1.000000 94 AITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAACGAAAAACCCDGGAGG 1.000000 95 AITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAACGAAAAGCCTDGGGAG 1.000000 96 AITGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAACGAAGAACCCDGAGAA 1.000000 97 AICGCAGTGACAICAGGGTG 1 CTAGCAATTAGGTGCAAAGCGAAAGACCTDGAGAG 1.000000 98 ADTATGGTTGCAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGTCCDGAGAA 1.000000 99 ADTATGGTTGCAIGTGGGTG 2 CTAGCAATTGGGTGTGCGACAAAAGATACDGAGAA 1.000000 100 ADCGCGGTTGCAIGTGAACG 4 AAGAGGGTTGTTCTTGAAGCGAAAAGCATDGAGAG 2.000000 101 ADCGCGGTTGCAIGTGAACA 4 AAGAGGGCTGTTCTTGAAGCGAAAAACCCDGAGAA 1.000000 102 ADCGCAGGTACAIGTGGGCG 4 ATGAGGATTGGGCGTGCAGCGAAAAGTCCDGAGGG 1.000000 103 ADCGCAGGTGCAICAGGGTG 2 CTAGCAATTGGGTGTGCGACAAAAGGCCCDGAGAA 1.000000 104 ADCGCAGGGACAICAGGGTG 1 CTAGCAATAAGGTGCGAAGCGAAAAACATDGAGAG 1.000000 105 ADCGCAGGGACAICAGGGTG 1 CTAGCAATTAGGTGCAAAGCGAAAGACACIGGAGG 1.000000 106 ADCGCAGGGACAICAGGGTG 1 CTAGCAATTAGGTGCAAAGCGAAAGACCCDGAGAG 1.000000 107 ADCGCAGGGACAICAGGGTG 1 CTAGCAATTAGGTGCAAAGCGAAAGGCCCDGAGAA 1.000000 108 ADCGCAGGGACAICAGGGTG 2 AAGAGGGTTGTTCTTGAAACGAAGAACCCDGAGAA 1.000000 109 ADCGCAGGGACAIGTGAACA 4 AAGAGGGTTGTTCTTGAAGCGAAAAGCCTDGAGAG 1.000000 110 ADCGCAAGTACAIGTGGGTG 1 ATAGCAATTGGGCTTGAAGCGAAAAACCCDGAGAA 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY P001: (3,27) P002: (18,74) P003: (24,38) P004: (69,109) P005: (83,85) P006: (43,61) P007: (48,106) P008: (35,45) P009: (5,18) P010: (63,64) P011: (53,95) P012: (35,44) P013: (30,38) P014: (58,75) P015: (22,54) P016: (6,81) P017: (5,34) P018: (94,100) P019: (29,42) P020: (35,61) P021: (70,96) P022: (54,56) P023: (1,97) P024: (12,49) P025: (8,9) P026: (71,72) P027: (46,86) P028: (25,107) P029: (5,7) P030: (28,40) P031: (56,59) P032: (12,53) P033: (54,83) P034: (54,56) P035: (5,43) P036: (14,84) P037: (47,66) P038: (10,35) P039: (4,61) P040: (37,62) P041: (7,53) P042: (34,35) P043: (8,41) P044: (18,77) P045: (56,103) P046: (8,61) P047: (54,58) P048: (16,105) P049: (76,82) P050: (18,104) P051: (5,61) P052: (33,80) P053: (61,98) P054: (26,79) P055: (55,59) P056: (38,70) P057: (88,108) P058: (19,54) P059: (35,93) P060: (39,87) P061: (11,102) P062: (44,90) P063: (54,91) P064: (2,100) P065: (61,68) P066: (12,39) P067: (54,54) P068: (12,51) P069: (52,61) P070: (35,56) P071: (12,32) P072: (5,50) P073: (17,23) P074: (54,61) P075: (58,78) P076: (18,73) P077: (5,15) P078: (60,91) P079: (50,91) P080: (13,70) P081: (20,31) P082: (89,99) P083: (21,57) P084: (78,84) P085: (65,67) P086: (36,101) P087: (12,18) P088: (17,110) P089: (92,35) P090: (5,54) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 P001 T I T G C G G G T G G A D C A A G G T G 1 A T A G C A A T A A G G T G C A A A G C G A A A G G T A [T] D G A G A [G] T I T G T G G T T A C G I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C [C] D G A G A [A] 0 P002 T I T G C G G T T G C G I G T G A A C G 4 A A G A G G G T T G T G C T T G A A G C G A A A A (A) (C) C C D G A G A A T D T G C G A G T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) (T) C C D G A G A A 0 P003 T I T G T G G T T A C G I G T G A A C G 4 A A G A G G G T T G T G C T T G A A G C G A A A A G (T) C C D G A G A A T I T G T G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G (C) C C D G A G A A 0 P004 T D T G C G G T T G C A I G T G A A C (G) 4 A A G A G G G T T G T T C T T G A A G C G A A A A (A) C (A) T D G A G A G [A] D C G C A G G G A C A I [G] [T] G A A C (A) 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) C (C) T D G A G A G 0 P005 T D T G C G A G T (G) G A D C A A G G T G 1 A T A G C A A T A A G G T G C A C G A T A C G G G G (T) C C D G A G A A [T] D T G C A G G T (A) C A I C A G G G T G 2 C T A G C A A T T G G G T G T G C G A C A A A A G G (C) C C D G A G A A 0 P006 T I (T) G (T) G G T (G) G C A I G T G A A C A 4 A A G A G G G (C) T G T T C T T G A A G C G A A A A G T C T D A A G A G T I (C) G (C) G G T (T) G C A I G T G A A C A 4 A A G A G G G (T) T G T T C T T G A A G C G A A A A G T C C D G A G A A 0 P007 T (I) T A T G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A (A) [A] (D) C G C A G G G A C A I C A G G G T G 1 C T A G C A A T T A G G T G C A A A G C G A A A G A C C C D G A G A (G) 0 P008 T I T G T G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] C C C D G A G A A T I T G T G G T G G [G] A [D] C A A G G T G 1 A T A G C A A T A A G G T G C A C G A T A C G G G [G] [T] C [C] D G A G A A 0 P009 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A T I T G C G G T T G C G I G T G A A C G 4 A A G A G G G T T G T G C T T G A A G C G A A A A A C C C D G A G A A 0 P010 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G T A C G G G (A) (T) C T D A A G A G T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G T A C G G G (G) (C) C C D G A G A A 0 P011 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A (A) C C T D G (A) G A G A I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A A C G A A A A (G) C C T D G (G) G A G 0 P012 T I T G T G G T (T) G C A I G T G A A C A 4 A A G A G G G (T) T G T T C T T G A A G C G A A A A A C C C D G A G A A T I T G T G G T (G) G C A I G T G A A C A 4 A A G A G G G (C) T G T T C T T G A A G C G A A A A [G] [T] C C D G A G A A 0 P013 T I T G T G G T T G C A I G T G A A C (G) 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T C C D G A G A A T I T G T G G T T G C A I G T G A A C (A) 4 A A G A G G G T T G T T C T T G A A G C G A A A A G C C C D G A G A A 0 P014 T (I) (C) G C G (G) (T) T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G C C C D G A G A A T (D) (T) G C G (A) (G) T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A G A T A C G A A G C C C D G A G A A 0 P015 T I T G T G G T T A C G I G T G A A C G 4 A A G A G G G T T G T G C T T G A A G C G A A A A A (T) C [T] D (A) A G A (G) T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A (C) C [C] D (G) A G A (A) 0 P016 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] [C] [C] [C] (D) G [A] (G) (A) G T D T G C G A G T G G A D C A A G G T G 1 A T A G C A A T A A G G T G C A C G A T A C G [G] [G] [G] [T] [A] [T] (I) G [A] (A) (G) G 0 P017 T I T G (C) G G T T G C A I G T G A A C (G) 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A (A) T I T G (T) G G T T G C A I G T G A A C (A) 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C [T] D G A G A (G) 0 P018 A (I) (T) G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A (A) C G A A A A (A) C (C) C D G G A G G A (D) (C) G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A (G) C G A A A A (G) C (A) T D G A G A G 0 P019 T I T G T G G T (T) G C A I G T G A A C (G) 4 A A G A G G G (T) T G T T C T T G A A G C G A A A A [G] [T] [A] C I G G A G G T I T G T G G T (G) G C A I G T G A A C (A) 4 A A G A G G G (C) T G T T C T T G A A G C G A A A A [G] [C] C C D G A G A A 0 P020 T I (T) G (T) G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A T I (C) G (C) G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T C C D G A G A A 0 P021 (T) D T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A A C G A A G A A C C C D G A G A A (A) I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A A C G A A G A A C C C D G A G A A 0 P022 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] [C] C C D G A G A A T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] [T] [A] C I G G A G G 0 P023 T I T G C G G G T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C [T] D G A G A G A I C G C A G T G A C A I C A G G G T G 1 C T A G C A A T T A G G T G C A A A G C G A A A G A C C [T] D G A G A G 0 P024 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A G C C C D G A G A A T I T A T G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G C C C D G A G A A 0 P025 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A A T C T D G A G A G T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A A T C T D A A G A G 0 P026 T D T G C G A G T (A) C (G) I G T G A A C G 4 A A G A G G G T T G T (G) C T T G A A G C G A A A A [A] [C] [C] [T] D G A G A (G) T D T G C G A G T (G) C (A) I G T G A A C G 4 A A G A G G G T T G T (T) C T T G A A G C G A A A A [A] [C] C C D G A G A (A) 0 P027 T (I) T (G) (T) G A G T G G A D C A A G G T G 1 A T A G C A A T A A G G T G C A C G A T A C G G G G T C T D G A G A G T (D) T (A) (C) G A G T A C G I G T G A A C G 4 A A G A G G G T T G G G C T T G A A G C G A A A A G T C T D G A G A G 0 P028 T I T G T G G T T A C G I G T G A A C G 4 A A G A G G G T T G T G C T T G A A G C G A A A A G T C C D G A G A (G) [A] D C G C A G G G A C A I C A G G G T G 1 C T A G C A A T T A G G T G C A A A G C G A A A [G] G C C C D G A G A (A) 0 P029 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] [C] C C D G A G A A T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] [C] C C D G A G G G 0 P030 T I T G T G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A (A) T C [T] D G A G A G T I T G T G G T G A C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) T C [T] D G A G A G 0 P031 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A T A C I G G A G G T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T A C I G G A G G 0 P032 T I (T) G C G G T T G C A I G T G A A C (G) 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) C C C D G A G A A T I (C) G C G G T T G C A I G T G A A C (A) 4 A A G A G G G T T G T T C T T G A A G C G A A A A (A) C C [T] D G A G A G 0 P033 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A (A) (C) C C D G A G A A T D T G C G A G T G G A D C A A G G T G 1 A T A G C A A T A A G G T G C A C G A T A C G G G (G) (T) C C D G A G A A 0 P034 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] [C] C C D G A G A A T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] [T] [A] C I G G A G G 0 P035 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A (A) (C) C [C] D (G) A G A (A) T I T G T G G T G G C A I G T G A A C A 4 A A G A G G G C T G T T C T T G A A G C G A A A A (G) (T) C [T] D (A) A G A (G) 0 P036 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T A T D G A G A [G] T D T G C G A G T G G A D C A A G G T G 1 A T A G C A A T A A G G T G T A C G A T A C G A A G T C C D G A G A A 0 P037 T I T A T G G T T G C A I G T G A A C (G) 4 A A G A G G G (T) T G T T C T T G A A G C G A A A A A C C C D G A G A A T I C G C G G T T G C A I G T G A A C (A) 4 A A G A G G G (C) T G T T C T T G A A G C G A A A A A C C C D G A G A A 0 P038 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A A (T) C [C] D G A G A [A] T I T G T G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A (C) C [C] D G A G A A 0 P039 T I (T) G C G G T T G C A I G T G A A C (G) 4 A A G A G G G T T G T (G) C T T G A A G C G A A A A (A) (C) C C D G A G A A T I (C) G C G G T T G C A I G T G A A C (A) 4 A A G A G G G T T G T (T) C T T G A A G C G A A A A (G) (T) C C D G A G A A 0 P040 T I (T) G (T) G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A T C [C] D G A G A (A) T I (C) G (C) G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G T A C G G G A T C [T] D [G] A G A (G) 0 P041 T I (T) G C G G T T G C A I G T G A A C (G) 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] [C] C C D G A G G G T I (C) G C G G T T G C A I G T G A A C (A) 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] [C] C T D G A G A G 0 P042 T I T G T G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C [T] D G A G A G T I T G T G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A 0 P043 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A (A) T C T D (G) A G A G T I T G T G G T G G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) T C T D (A) A G A G 0 P044 T I T G C G G T T G C G I G T G A A C G 4 A A G A G G G T T G T G C T T G A A G C G A A A A (A) (C) C C D G A G A A T D T G C G A G T G G A D C A A A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) (T) C C D G A G A A 0 P045 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] [T] [A] C (I) G (G) (A) (G) (G) A D C G C A G G T G C A I C A G G G T G 2 C T A G C A A T T G G G T G T G C G A C A A A A G [G] [C] [C] C (D) G (A) (G) (A) (A) 0 P046 T I (T) G C G G T T G C A I G T G A A C (G) 4 A A G A G G G T T G T T C T T G A A G C G A A A A A T C (T) D G A G A (G) T I (C) G C G G T T G C A I G T G A A C (A) 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T C (C) D G A G A (A) 0 P047 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G C C C D G A G A A 0 P048 (T) I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A G [A] C C C D G A G A A (A) D C G C A G G G A C A I C A G G G T G 1 C T A G C A A T T A G G T G C A A A G C G A A A G [A] [C] [A] C I G G A G G 0 P049 T D T G C G A G T G C A I G T G A A C A 4 A A G A G G G C T G T T C T T G A A G C G A A G G (A) (C) C T D A A G A G T D T G C G A G T G G A D C A A G G T G 1 A T A G C A A T A A G G T G C A C G A T A C G G G (G) (T) C T D A A G A G 0 P050 T I T G C G G T T G C G I G T G A A C G 4 A A G A G G G T T G T G C T T G A A G C G A A A A A C (C) [C] D G A G A (A) A D C G C A G G G A C A I C A G G G T G 1 C T A G C A A T A A G G T G C G A A G C G A A A A A C (A) [T] D G A G A (G) 0 P051 T I (T) G C G G T T G C A I G T G A A C (G) 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A T I (C) G C G G T T G C A I G T G A A C (A) 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T C C D G A G A A 0 P052 T I T G T G G T T G C A I G T G A A C A 4 A A G A G G G T T G T G C T T G A A G C G A A A A [A] [C] [C] [C] D G A G A (G) T D T G C G A G T G G A D C A A G G T G 1 A T A G C A A T A A G G T G C A C G A T A C G [G] [G] [G] [C] C [C] D [G] A G A (A) 0 P053 (T) (I) C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T C C D G A G A A (A) (D) T A T G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T C C D G A G A A 0 P054 T I T G T G G T T A C G I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C [T] D G A G A G T D T G C G A G T G G A D C A A G G T G 1 A T A G C A A T A A G G T G C A C G A T A C G [G] [A] G T A T D G A G A G 0 P055 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C (C) C I G G A G G T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A [G] [T] (A) C I G G A G G 0 P056 T I T G T G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) C C C D G A G A A T D T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A A C G A A G A (A) C C C D G A G A A 0 P057 (T) D T A T G G T (T) (G) G A D C A A G G T G 1 A T A G C A A T T G T T C T T G A A G C G A A A A [A] [C] C C D G A G A A (A) D C G C A G G (G) (A) C A I C A G G G T G 2 A A G A G G G T T G T T C T T G A A A C G A A [G] A A C C C D G A G A A 0 P058 T I (T) G (T) G G T [T] [A] C A I C A G G G T G 1 C T A G C A A T A A G G T G C A A A G C G A A A G [A] C C C D G A G A A T I (C) G (C) G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] [C] C C D G A G A A 0 P059 (T) I T G (T) G G T T G C A I G T G A A C (A) 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A (A) I T G (C) G G T T G C A I G T G A A C (G) 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C A T D G A G A G 0 P060 T I T G T G G T G A C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C [T] D (A) A G A [G] [T] D T A T G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G T A C A A A A C C [C] D (G) A G A [A] 0 P061 (T) (I) T G C (G) G (T) T (G) C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A A T C [C] D G A G (A) [G] (A) (D) C G C (A) G (G) T (A) C A I G T G G G C G 4 A [T] [G] A [G] [G] A T T G G G C G T G C A G C G A A A A G T C [C] D G A G (G) [G] 0 P062 T (I) T G T G G T G G C A I G T G A A C A 4 A A G A G G G C T G T T C T T G A A G C G A A A A (G) T C C D G A G A A T (D) C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A (A) T C C D G A G A A 0 P063 T (I) C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A T (D) C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T C C D G A G A A 0 P064 T I T G C G G (G) T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A (A) C (C) [C] D G A G A (A) A D C G C G G (T) T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) C (A) T D G A G A (G) 0 P065 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) (T) C (C) D G A G A (A) T I C G C A G [G] G A C A I C A G G G T G 1 C T A G C A A T T A G G T G C A A A G C G A A A [G] (A) (C) C (T) D G A G A (G) 0 P066 T I T G (C) G G T (T) (G) C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) C C C D G A G A A T I T G (T) G G T (G) (A) C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A (A) C C T D A A G A G 0 P067 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A 0 P068 T I (T) G C G G T T G C A I G T G A A C G 4 A A (G) A G G G T T G T T C T T G A A G C G A A A A (G) C C C D G A G A A T I (C) G C G G T T G C A I G T G A A C G 4 A A (A) A G G G T T G T T C T T G A A G C G A A A A (A) C C C D G A G A A 0 P069 T I C G C G G T T G C A I G T G A A C (G) 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A T I C G C G G T T G C A I G T G A A C (A) 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T C C D G A G A A 0 P070 T I (T) G (T) G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] C C C D G A G A A T I (C) G (C) G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A [A] [T] [A] C I G G A G G 0 P071 T I T G (C) G G T T G C A I G T G A A C (G) 4 A A G A G G G T T G T (T) C T T G A A G C G A A A A (G) C C C D G A G A A T I T G (T) G G T T G C A I G T G A A C (A) 4 A A G A G G G T T G T (G) C T T G A A G C G A A A A (A) C C C D G A G A A 0 P072 T I T (G) (C) G G T T G C A I G T G A A C (G) 4 A A G A G G G T T G T T C T T G A A G C G A A A A (A) (C) C C D G A G A A T I T (A) (T) G G T T G C A I G T G A A C (A) 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) (T) A T D G A G A [G] 0 P073 T I T G (C) G G T T (G) C (A) I G T G A A C (A) 4 A A G A G G G T T G T (T) C T T G A A G C G A A A A (A) (C) (C) [C] D G A G A (A) T I T G (T) G G T T (A) C (G) I G T G A A C (G) 4 A A G A G G G T T G T (G) C T T G A A G C G A A A A (G) (T) (A) [T] D G A G A (G) 0 P074 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A [G] T C C D G A G A A 0 P075 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G (C) C C D G A G A A T D T G C G A G T G G A D C A A G G T G 1 A T A G C A A T A A G G T G C A C G A T A C G A A G (T) C C D G A G A A 0 P076 T I T G C G G T T G C G I G T G A A C G 4 A A G A G G G T T G T G C T T G A A G C G A A A A A C C C D G A G A A T D T G C G A G T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A 0 P077 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A (A) T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T C C D G A G A (G) 0 P078 T (I) C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T C T D A A G A G T (D) C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T C C D G A G A A 0 P079 T (I) (T) (A) (T) G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T A T D G A G A G T (D) (C) (G) (C) G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A G T C C D G A G A A 0 P080 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) C C C D G A G (G) (G) T D T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A A C G A A G A (A) C C C D G A G (A) (A) 0 P081 T I T G T G G T T (A) C (G) I G T G A A C G 4 A A G A G G G T T G T (G) C T T G A A G C G A A (A) A [A] [C] C T D A A G A G T I T G T G G T T (G) C (A) I G T G A A C G 4 A A G A G G G T T G T (T) C T T G A A G C G A A (G) A [A] [C] [A] C I G G A G G 0 P082 (T) D (C) (G) (C) G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A (C) (C) C D G A G A A (A) D (T) (A) (T) G G T T G C A I G T G G G T G 2 C T A G C A A T T G G G T G T G C G A C A A A A G A (T) (A) C D G A G A A 0 P083 T I T G T G G T T A C G I G T G A A C G 4 A A G A G G G T T G T G C T T G A A G C G A A A A (A) (T) (A) T D (G) A G A G T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) (C) (C) T D (A) A G A G 0 P084 T D T G C G A G T G G A D C A A G G T G 1 A T A G C A A T A A G G T G C A C G A T A C G A A G T C C D G A G A A T D T G C G A G T G G A D C A A G G T G 1 A T A G C A A T A A G G T G T A C G A T A C G A A G T C C D G A G A A 0 P085 T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G (T) T G T T C T T G A A G T A C G G G G T C C D G A G A (G) T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G (C) T G T T C T T G A A G C G A A A A G T C C D G A G A (A) 0 P086 (T) (I) T G T G G T T G C A I G T G A A C A 4 A A G A G G G (T) T G T T C T T G A A G C G A A A A A C C C D G A G A (G) (A) (D) C G C G G T T G C A I G T G A A C A 4 A A G A G G G (C) T G T T C T T G A A G C G A A A A A C C C D G A G A (A) 0 P087 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A (G) C C C D G A G A A T I T G C G G T T G C G I G T G A A C G 4 A A G A G G G T T G T G C T T G A A G C G A A A A (A) C C C D G A G A A 0 P088 (T) I (T) G C (G) (G) T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A (A) D (C) G C (A) (A) G T A C A I G T G G G T G 1 A T A G C A A T [T] G G G C T T G A A G C G A A A A A C C [C] D G A G A A 0 P089 (A) I T G (C) G G T T G C A I C A G G G C G 4 A T G A G G A T T G G G T G C G A A (A) C G A A A A A C [C] (T) D G A G A (G) (T) I T G (T) G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A (G) C G A A A A [A] C C (C) D G A G A (A) 0 P090 T I T G C G G T T G C A I G T G A A C G 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A T I C G C G G T T G C A I G T G A A C A 4 A A G A G G G T T G T T C T T G A A G C G A A A A A C C C D G A G A A END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 P001 ? = = = C = = G = G G A D C A A G G T = 1 = T A G C A A = A A G G T G C A = = = = = = = = G G T A ? = = = = ? ? ? = = = T = = T = A C G I G T G A A C = 4 = A G A G G G = T G T T C T T G = = = = = = = = A A C C ? = = = = ? ? 0 P002 ? I = = = = G T = = = G ? ? ? ? = = = G = = = = = = = = = = = = G = = = = = = = = = = = = ? (A) (C) = ? = = = = ? ? ? D = = = = A G = = = A ? ? ? ? = = = A = = = = = = = = = = = = T = = = = = = = = = = = = ? (G) (T) = ? = = = = ? ? 0 P003 ? = = = = = = = = A = G ? ? ? ? = = = G = = = = = = = = = = = = G = = = = = = = = = = = ? = = (T) = ? = = = = = = ? = = = = = = = = G = A ? ? ? ? = = = A = = = = = = = = = = = = T = = = = = = = = = = = ? = = (C) = ? = = = = = = 0 P004 ? = T = = G = T T G = = ? ? ? ? = = = (G) = = = = = = = ? ? ? = = = = = = = = = = = = = = = ? (A) = (A) = ? = = = = = ? = C = = A = G G A = = ? ? ? ? = = = (A) = = = = = = = ? ? ? = = = = = = = = = = = = = = = ? (G) = (C) = ? = = = = = 0 P005 ? = = = = G A = = (G) G = D = = A = = = = 1 A = = = = = = = A A = = = = C A = = = T = C G G = = (T) = = = = = = = = ? = = = = A G = = (A) C = I = = G = = = = 2 C = = = = = = = T G = = = = T G = = = C = A A A = = (C) = = = = = = = = 0 P006 ? = (T) = (T) ? = ? (G) = = = ? ? ? ? = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = ? = A = = = G ? = (C) = (C) ? = ? (T) = = = ? ? ? ? = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = ? = G = = = A 0 P007 ? (I) T A T G = T T G = = = G T = A A C A 4 A A G A G G G = = G T T C T T G = = = = = = = = A = = = = = = = = = (A) ? (D) C G C A = G G A = = = C A = G G T G 1 C T A G C A A = = A G G T G C A = = = = = = = = G = = = = = = = = = (G) 0 P008 ? = = = = = = = T = ? ? ? ? ? ? A A C A 4 = A G A G G G = T G T T ? ? ? G A A G C G A A A A ? ? = ? = = = = = ? ? = = = = = = = G = ? ? ? ? ? ? G G T G 1 = T A G C A A = A A G G ? ? ? A C G A T A C G G G ? ? = ? = = = = = ? 0 P009 = = = = = = = = = = = A ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? = ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = G ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? = ? = = = = = = = = = = = = = = = = ? = = = = = = 0 P010 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) (T) = T = A = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) (C) = C = G = = = A 0 P011 T ? C = = = = = = = = = = = = = = = = A = = = = = = = = = = ? ? ? = = = = ? = G = = = = = = (A) = = = = = (A) = = = A ? T = = = = = = = = = = = = = = = = G = = = = = = = = = = ? ? ? = = = = ? = A = = = = = = (G) = = = = = (G) = = = 0 P012 ? = = = = = ? ? (T) = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? = = = ? = = = = = ? ? (G) = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? = = = 0 P013 = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = ? = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = ? = = = = = = = = = = = = = = = = C = = = = = = = = 0 P014 = (I) (C) = = = (G) (T) = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = A G C G A A = = = = = ? = = = = = = = (D) (T) = = = (A) (G) = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = G A T A C G = = = = = ? = = = = = = 0 P015 = = T = T = = = = A = G = = = = = = = G = = = = = = = = = = = = G = = = = = = = = = = = = = = (T) = ? = (A) = = = (G) = = C = C = = = = G = A = = = = = = = A = = = = = = = = = = = = T = = = = = = = = = = = = = = (C) = ? = (G) = = = (A) 0 P016 = I = = = = G T = = C = I G T G A A C = 4 = A G A G G G = T G T T ? ? T G A A G C G A A ? ? ? ? ? ? (D) ? ? (G) (A) = = D = = = = A G = = G = D C A A G G T = 1 = T A G C A A = A A G G ? ? C A C G A T A C G ? ? ? ? ? ? (I) ? ? (A) (G) = 0 P017 = = = = (C) = = = = = = = = = = = = = = (G) = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = ? = = = = = (A) = = = = (T) = = = = = = = = = = = = = = (A) = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = ? = = = = = (G) 0 P018 = (I) (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = (A) = = = = = = (A) = (C) C = = G A ? = = (D) (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = (G) = = = = = = (G) = (A) T = = A G ? = 0 P019 = = = = = = = = (T) = = = = = = = = = = (G) = = = = = = = = (T) = = = = = = = ? = = = = = = = = = ? ? ? ? I = G A G G = = = = = = = = (G) = = = = = = = = = = (A) = = = = = = = = (C) = = = = = = = ? = = = = = = = = = ? ? ? ? D = A G A A 0 P020 ? = (T) = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? A C = ? ? = = = ? = ? = (C) = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? G T = ? ? = = = ? = 0 P021 (T) D = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = ? = = = = = = (A) I = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = ? = = = = = = 0 P022 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = ? ? ? ? D = A G A A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = ? ? ? ? I = G A G G 0 P023 T = T = = G = G T G = = = G T = A A C = 4 A A G A G G G = = G T T C T T G = = = = = = = = A = = = ? ? = = = = = A = C = = A = T G A = = = C A = G G T = 1 C T A G C A A = = A G G T G C A = = = = = = = = G = = = ? ? = = = = = 0 P024 = = = G C = = ? = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = ? = = = = A T = = ? = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = ? = 0 P025 = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = A = = = = 0 P026 = = = = = = = = = (A) ? (G) = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = ? ? ? ? ? = = = = (G) = = = = = = = = = (G) ? (A) = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = ? ? ? ? ? = = = = (A) 0 P027 = (I) = (G) (T) = = = = G G A D C A A G G T = 1 = T A G C A ? = A ? = = T G C A C G A T A C G G G = = = = = = = = = = = (D) = (A) (C) = = = = A C G I G T G A A C = 4 = A G A G G ? = T ? = = C T T G A A G C G A A A A = = = = = = = = = = 0 P028 ? I T = T G = T T ? = G = G T = A A C = 4 A A G A G G G = = G T = C T T G = = = = = = = ? ? = T = = = = = = ? (G) ? D C = C A = G G ? = A = C A = G G T = 1 C T A G C A A = = A G = T G C A = = = = = = = ? ? = C = = = = = = ? (A) 0 P029 = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? = ? ? ? ? ? = = = A A = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? = ? ? ? ? ? = = = G G 0 P030 = = = = = = = = T G = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = (A) = = ? = = = = = = = = = = = = = = G A = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = (G) = = ? = = = = = = 0 P031 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = 0 P032 = = (T) = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = ? ? (G) = = ? ? ? ? = = A = = (C) = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = ? ? (A) = = ? ? ? ? = = G 0 P033 = I C = = = G T = = C = I G T G A A C A 4 = A G A G G G = T G T T C T T G ? A G C G A A A A (A) (C) = ? = = = = = = = D T = = = A G = = G = D C A A G G T G 1 = T A G C A A = A A G G T G C A ? G A T A C G G G (G) (T) = ? = = = = = = 0 P034 = = = = = = = ? = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? = = = = ? = = = = = = ? ? ? ? ? ? D = ? G A A = = = = = = = ? = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? = = = = ? = = = = = = ? ? ? ? ? ? I = ? A G G 0 P035 = = = = C = = = T = = = = = = = = = = G = = = = = = = = T = = = = = = = = = = = = = = = = = (A) (C) = ? = (G) = = = (A) = = = = T = = = G = = = = = = = = = = A = = = = = = = = C = = = = = = = = = = = = = = = = = (G) (T) = ? = (A) = = = (G) 0 P036 ? I = = = = G T ? ? C = I G T G A A C = 4 = A G A G G G = T ? T T C T = G A A G C G A A ? ? = = A ? = = = = ? ? ? D = = = = A G ? ? G = D C A A G G T = 1 = T A G C A A = A ? G G T G = A C G A T A C G ? ? = = C ? = = = = ? ? 0 P037 = = T A T = = = = = = = = = = = = = = (G) = = = = = = = = (T) = ? ? ? = = = ? = = = = = = = = = = = = = = = = = = = = = C G C = = = = = = = = = = = = = = (A) = = = = = = = = (C) = ? ? ? = = = ? = = = = = = = = = = = = = = = = = = = 0 P038 = = = = C = = = ? ? = = = = = = = = = G = = = = = = = = = = ? = = = = = = = = = = = = = ? ? = (T) = ? = = = = ? ? = = = = T = = = ? ? = = = = = = = = = A = = = = = = = = = = ? = = = = = = = = = = = = = ? ? = (C) = ? = = = = ? ? 0 P039 = = (T) = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = (G) = = = = = = = = = = = = = (A) (C) = = = = = = ? = = = (C) = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = (T) = = = = = = = = = = = = = (G) (T) = = = = = = ? = 0 P040 = = (T) = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C G A A A A = = = ? = ? = = = (A) = = (C) = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T A C G G G = = = ? = ? = = = (G) 0 P041 = = (T) = = = = = = = = = = = = = = = = (G) = = = = = = = = = = ? ? ? = = = ? ? = ? ? ? ? ? = = ? ? = C = = = = G = = = (C) = = = = = = = = = = = = = = = = (A) = = = = = = = = = = ? ? ? = = = ? ? = ? ? ? ? ? = = ? ? = T = = = = A = 0 P042 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = A 0 P043 = = = = C = = = T = = = ? ? ? = = = = G = = = = = = = ? = = ? = = = = = = = = = = = = = = = (A) = = ? = (G) = = = = = = = = T = = = G = = = ? ? ? = = = = A = = = = = = = ? = = ? = = = = = = = = = = = = = = = (G) = = ? = (A) = = = = 0 P044 ? I = = = = G T ? ? C G I G T G = = = G = = = = = = = = = = ? ? ? = = = ? ? = ? ? ? ? ? ? ? (A) (C) = ? = = = = ? ? ? D = = = = A G ? ? G A D C A A = = = A = = = = = = = = = = ? ? ? = = = ? ? = ? ? ? ? ? ? ? (G) (T) = ? = = = = ? ? 0 P045 T I = = = G = T ? = = = = G T = A A C A 4 A A G A G G G = = = T T C T = = A ? G = G = = = A ? ? ? ? (I) = (G) (A) (G) (G) A D = = = A = G ? = = = = C A = G G T G 2 C T A G C A A = = = G G T G = = C ? A = A = = = G ? ? ? ? (D) = (A) (G) (A) (A) 0 P046 = = (T) = = = ? ? = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = ? ? A = = (T) = = = = = (G) = = (C) = = = ? ? = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = ? ? G = = (C) = = = = = (A) 0 P047 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = 0 P048 (T) I T = = G = T T G = = = G T = A A C = 4 A A G A G G G = = G T T C T T G = ? = = = = = = = ? ? ? ? D = ? G A A (A) D C = = A = G G A = = = C A = G G T = 1 C T A G C A A = = A G G T G C A = ? = = = = = = = ? ? ? ? I = ? A G G 0 P049 = = = = = = = = = = C = I G T G A A C A 4 = A G A G G G C T G T T C T T ? A A G C G A A = = (A) (C) = ? = = = = = = = = = = = = = = = = G = D C A A G G T G 1 = T A G C A A T A A G G T G C ? C G A T A C G = = (G) (T) = ? = = = = = = 0 P050 T I T = = G = T T G = G = G T = A A C = 4 A A G A G G G = T G T = C T T = = = = = = = = = = = = (C) ? = = = = = (A) A D C = = A = G G A = A = C A = G G T = 1 C T A G C A A = A A G = T G C = = = = = = = = = = = = (A) ? = = = = = (G) 0 P051 = = (T) = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = ? = = = = = = A C = = = = = = ? ? = = (C) = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = ? = = = = = = G T = = = = = = ? ? 0 P052 ? I = = T = G T = = ? = I G T G A A C A 4 = A G A G G G = T ? T = C T T ? A A G C G A A ? ? ? ? ? ? ? ? = = ? (G) ? D = = C = A G = = ? = D C A A G G T G 1 = T A G C A A = A ? G = T G C ? C G A T A C G ? ? ? ? ? ? ? ? = = ? (A) 0 P053 (T) (I) C G C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) (D) T A T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P054 = I = = T = G T = A C G I G T G A A C = 4 = A G A G G G = T ? T T C T T G A A G C G A A ? ? A C C ? ? ? = = = = = D = = C = A G = G G A D C A A G G T = 1 = T A G C A A = A ? G G T G C A C G A T A C G ? ? G T A ? ? ? = = = = 0 P055 = = = = ? = = ? = = ? ? = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = ? ? (C) ? = = ? = = = = = = = ? = = ? = = ? ? = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = ? ? (A) ? = = ? = = = 0 P056 = I = = T = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = G = = = = ? ? (G) = = ? = ? ? ? = = = D = = C = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = A = = = = ? ? (A) = = ? = ? ? ? = = 0 P057 (T) = T A T G = T (T) (G) G = D = = A = = = = 1 = T A G C A A = = = = = = = = = ? = G = = = = ? = ? ? ? ? ? = = = ? ? (A) = C G C A = G (G) (A) C = I = = G = = = = 2 = A G A G G G = = = = = = = = = ? = A = = = = ? = ? ? ? ? ? = = = ? ? 0 P058 = = (T) = (T) = = = ? ? = = = C A = G G T G 1 C T A G C A A = A A G G T G C A = ? = = = = = = G ? ? = = = = = = = = = = (C) = (C) = = = ? ? = = = G T = A A C A 4 A A G A G G G = T G T T C T T G = ? = = = = = = A ? ? = = = = = = = = 0 P059 (T) = = = (T) = = = = = = = = = = = = = = (A) = = = = = = = = = = ? = = ? ? ? = = = = = = = = = = = = C C = = = = = A (A) = = = (C) = = = = = = = = = = = = = = (G) = = = = = = = = = = ? = = ? ? ? = = = = = = = = = = = = A T = = = = = G 0 P060 ? I = G = = = = G A = = = = = = = = = G = = = = = = = = = = = = = = = = = = = ? C G A = ? ? = = = ? = (A) = = ? ? ? D = A = = = = T G = = = = = = = = = A = = = = = = = = = = = = = = = = = = = ? T A C = ? ? = = = ? = (G) = = ? ? 0 P061 (T) (I) T = = (G) = (T) = (G) = = = = = = A A = = = ? ? ? ? ? ? G = = ? T T = T = = A = = = = = = ? ? A = = ? ? ? ? = (A) ? (A) (D) C = = (A) = (G) = (A) = = = = = = G G = = = ? ? ? ? ? ? A = = ? G G = G = = C = = = = = = ? ? G = = ? ? ? ? = (G) ? 0 P062 = (I) T = T = = = G = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = ? ? (G) = = ? ? = = = = = = (D) C = C = = = T = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = ? ? (A) = = ? ? = = = = = 0 P063 = (I) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? A C = ? = = = = = = = (D) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? G T = ? = = = = = = 0 P064 T I T = = = = (G) ? ? = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = = = = = = = ? ? (A) = (C) ? = = = = ? (A) A D C = = = = (T) ? ? = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = = = = = = = ? ? (G) = (A) ? = = = = ? (G) 0 P065 = = = = = G = ? T G = = = G T = A A C A 4 A A G A G G G = = G T T C T T G ? = = = = = = ? ? (G) (T) = (C) = = = = = (A) = = = = = A = ? G A = = = C A = G G T G 1 C T A G C A A = = A G G T G C A ? = = = = = = ? ? (A) (C) = (T) = = = = = (G) 0 P066 = = = = (C) = = = (T) (G) = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = (G) = = ? = G = = = A = = = = (T) = = = (G) (A) = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = (A) = = ? = A = = = G 0 P067 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? = = = = = = = ? ? = = = = = = = = = = 0 P068 ? = (T) = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = ? ? (G) = = ? = = = = ? = ? = (C) = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = ? ? (A) = = ? = = = = ? = 0 P069 = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = A C = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = G T = = = = = = = = 0 P070 = = (T) = (T) = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = ? = = = = = = = = ? ? ? ? D = A G A A = = (C) = (C) = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = ? = = = = = = = = ? ? ? ? I = G A G G 0 P071 = = = = (C) = = = = = = = = = = = = = = (G) = = = = = = = = = = = = (T) = = = = = = = = = = = = = (G) = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = (A) = = = = = = = = = = = = (G) = = = = = = = = = = = = = (A) = = = = = = = = = 0 P072 = = = (G) (C) = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = (A) (C) C ? = = = = ? ? = = = (A) (T) = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = (G) (T) A ? = = = = ? ? 0 P073 = = = = (C) = = = = (G) = (A) = = = = = = = (A) = = = = = = = = = = = = (T) = = = = = = = = = = = = = (A) (C) (C) ? ? ? ? = = (A) = = = = (T) = = = = (A) = (G) = = = = = = = (G) = = = = = = = = = = = = (G) = = = = = = = = = = = = = (G) (T) (A) ? ? ? ? = = (G) 0 P074 = = = = = = = = = ? = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = ? C = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = ? T = = = = = = = = 0 P075 = I C = = = G T = = C = I G ? G A A C A 4 = A G A G G G = T G T T C T T G A A G C G A A = = = (C) = = = = = = = = = D T = = = A G = = G = D C ? A G G T G 1 = T A G C A A = A A G G T G C A C G A T A C G = = = (T) = = = = = = = = 0 P076 ? I = = = = G T = = = G = = = = = = = G = = = = = = = = = = = = G = = = = = = = = = = = ? ? = = = ? = = = = = = ? D = = = = A G = = = A = = = = = = = A = = = = = = = = = = = = T = = = = = = = = = = = ? ? = = = ? = = = = = = 0 P077 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A C = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G T = = = = = = = (G) 0 P078 = (I) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? = A = = = ? = (D) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? = G = = = ? 0 P079 = (I) (T) (A) (T) = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = A ? = = = = = G = (D) (C) (G) (C) = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = C ? = = = = = A 0 P080 = I = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = G = = = = A = (G) = = ? ? ? ? = (G) (G) = D = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = A = = = = G = (A) = = ? ? ? ? = (A) (A) 0 P081 = = = = = = = = = (A) = (G) = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = (A) = ? ? ? ? D A A G A = = = = = = = = = = (G) = (A) = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = (G) = ? ? ? ? I G G A G = 0 P082 (T) = (C) (G) (C) = = = = = = = = = = = A A C A 4 A A G A G G G = = ? ? ? C T = = A ? G = G = = = A = (C) (C) = = = = = = = (A) = (T) (A) (T) = = = = = = = = = = = G G T G 2 C T A G C A A = = ? ? ? T G = = C ? A = A = = = G = (T) (A) = = = = = = = 0 P083 = = T = T = = = = A = G = = = = = = = G = = = = = = = ? = = = = G = = = = ? = = = = = = = = (A) (T) (A) ? = (G) = = = = = = C = C = = = = G = A = = = = = = = A = = = = = = = ? = = = = T = = = = ? = = = = = = = = (G) (C) (C) ? = (A) = = = = 0 P084 ? = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = ? = = = = = = = = ? ? ? = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = ? = = = = = = = = ? ? 0 P085 = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = ? = T A C G ? G = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = ? = C G A A ? A = = = = = = = = = (A) 0 P086 (T) (I) T = T = = = = = = = = = = = = = = = = = = = = = = = (T) ? = = = = = = = = = = = = = = = = = = = = = = = = ? (G) (A) (D) C = C = = = = = = = = = = = = = = = = = = = = = = = (C) ? = = = = = = = = = = = = = = = = = = = = = = = = ? (A) 0 P087 = = = = = = = = = ? = A = = = = = = = = = = = = = = = = ? ? = = T = = = = = = = = = = = = = (G) = = = = = = = ? ? = = = = = = = = = ? = G = = = = = = = = = = = = = = = = ? ? = = G = = = = = = = = = = = = = (A) = = = = = = = ? ? 0 P088 (T) I (T) = = (G) (G) T = G = = = = = = A A C A 4 = A G A G G ? ? ? = T T ? = = = = = = = = = = = = = = ? ? = = = = ? ? (A) D (C) = = (A) (A) G = A = = = = = = G G T G 1 = T A G C A ? ? ? = G G ? = = = = = = = = = = = = = = ? ? = = = = ? ? 0 P089 (A) = = = (C) = = = = = = = = C A = G G = G = = T = = = = A = = = G G T G C = = = (A) = = = = = = ? ? ? (T) = = = = ? (G) (T) = = = (T) = = = = = = = = G T = A A = A = = A = = = = G = = = T T C T T = = = (G) = = = = = = ? ? ? (C) = = = = ? (A) 0 P090 = = T = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS ? = = = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = 1.00 1.00 1.00 1.00 ? = = = = ? ? ? 0.95 = = = = 0.95 0.95 = = = 0.96 ? ? ? ? = = = 0.96 = = = = = = = = = = = = 0.96 = = = = = = = = = = = = ? 0.64 0.66 = ? = = = = ? ? ? = = = = = = = = 1.00 = 1.00 ? ? ? ? = = = 1.00 = = = = = = = = = = = = 0.97 = = = = = = = = = = = ? = = 0.67 = ? = = = = = = ? = 0.97 = = 1.00 = 1.00 1.00 1.00 = = ? ? ? ? = = = 0.76 = = = = = = = ? ? ? = = = = = = = = = = = = = = = ? 0.55 = 0.53 = ? = = = = = ? = = = = 1.00 1.00 = = 0.67 1.00 = 1.00 = = 1.00 = = = = 1.00 1.00 = = = = = = = 1.00 1.00 = = = = 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 = = 0.70 = = = = = = = = ? = 0.64 = 0.64 ? = ? 0.65 = = = ? ? ? ? = = = = = = = = = = = = 0.65 = = = = = = = = = = = = = = = = = = = = ? = 0.96 = = = 0.96 ? 0.82 0.99 0.98 0.99 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = 1.00 = = = = = = = = = 0.52 ? = = = = = = = 1.00 = ? ? ? ? ? ? 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 ? ? ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? ? = ? = = = = = ? = = = = = = = = = = = 1.00 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? = ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.63 0.59 = 1.00 = 1.00 = = = 1.00 1.00 ? 0.99 = = = = = = = = = = = = = = = = 0.97 = = = = = = = = = = ? ? ? = = = = ? = 1.00 = = = = = = 0.55 = = = = = 0.52 = = = ? = = = = = ? ? 0.77 = = = = = = = = = = = = = = = = = = = 0.77 = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = 0.54 = = = = = = = = = = ? = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = 0.55 0.55 = = = 0.55 0.55 = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = ? = = = = = = = = 0.99 = 0.99 = = = = 0.99 = 0.99 = = = = = = = 0.99 = = = = = = = = = = = = 0.99 = = = = = = = = = = = = = = 0.54 = ? = 0.65 = = = 0.65 = 1.00 = = = = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 ? ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? ? ? ? ? ? 0.57 ? ? 0.57 0.57 = = = = = 0.74 = = = = = = = = = = = = = = 0.73 = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = ? = = = = = 0.78 = 0.65 0.65 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = 0.65 = = = = = = 0.60 = 0.82 1.00 = = 1.00 1.00 ? = = = = = = = = = 0.55 = = = = = = = = = = 0.55 = = = = = = = = 0.55 = = = = = = = ? = = = = = = = = = ? ? ? ? 1.00 = 1.00 1.00 1.00 1.00 ? = 0.63 = 0.63 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? 0.94 0.95 = ? ? = = = ? = 0.85 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = ? ? ? ? 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = 1.00 = = = ? ? = = = = = = = = 0.98 1.00 = = ? = = = = = = = = = = = 0.95 = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = 0.69 ? 0.69 = = = = = = = = = = = = = = = = = = = = 0.68 = = = = = = = = = = = = = ? ? ? ? ? = = = = 0.85 = 0.51 = 0.50 0.50 = = = = 0.98 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 ? = 1.00 ? = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = ? 1.00 1.00 = 1.00 1.00 = 1.00 1.00 ? = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = = = = = ? ? = 1.00 = = = = = = ? 0.63 = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? = ? ? ? ? ? = = = 1.00 1.00 = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = 0.54 = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = 0.56 = = = = = = = = = = = = = = = = 0.56 = = = = = = = = = = = = = = = = = = = = = = = = ? ? 0.66 = = ? ? ? ? = = 0.94 = 0.99 1.00 = = = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.64 0.63 = ? = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? = = = = ? = = = = = = ? ? ? ? ? ? 1.00 = ? 1.00 1.00 1.00 = = = = 0.93 = = = 0.93 = = = = = = = = = = 0.93 = = = = = = = = 0.93 = = = = = = = = = = = = = = = = = 0.89 0.89 = ? = 0.71 = = = 0.71 ? 1.00 = = = = 1.00 1.00 ? ? 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 ? 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? ? = = 1.00 ? = = = = ? ? = = 0.99 0.99 0.99 = = = = = = = = = = = = = = 0.62 = = = = = = = = 0.65 = ? ? ? = = = ? = = = = = = = = = = = = = = = = = = = = = = = 0.97 = = = ? ? = = = = = = = = = 0.99 = = = = = = = = = = ? = = = = = = = = = = = = = ? ? = 0.64 = ? = = = = ? ? = = 0.84 = = = = = = = = = = = = = = = = 0.84 = = = = = = = = = = = = 0.81 = = = = = = = = = = = = = 0.72 0.76 = = = = = = ? = = = 0.88 = 0.88 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.98 0.98 0.98 0.98 0.98 0.98 = = = ? = ? = = = 0.61 = = 0.65 = = = = = = = = = = = = = = = = 0.65 = = = = = = = = = = ? ? ? = = = ? ? = ? ? ? ? ? = = ? ? = 0.99 = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = 0.99 = = = = 0.97 = = = 0.96 = = = ? ? ? = = = = 0.97 = = = = = = = ? = = ? = = = = = = = = = = = = = = = 0.69 = = ? = 0.56 = = = = ? 1.00 = = = = 1.00 1.00 ? ? 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = = = = = = = = = = ? ? ? = = = ? ? = ? ? ? ? ? ? ? 0.69 0.69 = ? = = = = ? ? 0.94 0.94 = = = 0.94 = 0.94 ? = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 1.00 1.00 = = 1.00 ? 1.00 = 1.00 = = = 1.00 ? ? ? ? 0.72 = 0.72 0.72 0.72 0.72 = = 0.82 = = = ? ? = = = = = = = = = = = 0.83 = = = = = = = = = = = = = = = = = = = = = = = = ? ? 0.91 = = 0.87 = = = = = 0.87 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = 0.89 0.98 1.00 = = 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = ? = = = = = = = ? ? ? ? 1.00 = ? 1.00 1.00 1.00 = = = = = = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 0.57 0.51 = ? = = = = = = 0.94 0.99 0.99 = = 0.99 = 0.99 0.99 0.99 = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = 0.62 ? = = = = = 0.62 = = 0.64 = = = = = = = = = = = = = = = = 0.64 = = = = = = = = = = = = = = = = = = = ? = = = = = = 0.95 0.94 = = = = = = ? ? ? 1.00 = = 1.00 = 1.00 1.00 = = ? = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 ? 1.00 = 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? ? ? ? ? ? ? ? = = ? 0.71 0.67 0.72 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? ? 1.00 1.00 1.00 ? ? ? = = = = = = = = ? = = ? = = ? ? = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = ? ? 0.78 ? = = ? = = = = 0.98 = = 0.99 = = = = = = = = = = = = = = 0.99 = = = = = = = = = = = = = = = = = = = 1.00 = = = = ? ? 0.62 = = ? = ? ? ? = = 0.86 = 0.99 0.99 0.99 1.00 = 1.00 0.78 0.78 1.00 = 1.00 = = 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = ? = 1.00 = = = = ? = ? ? ? ? ? = = = ? ? = = 0.69 = 0.69 = = = ? ? = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = ? = = = = = = 1.00 ? ? = = = = = = = = 0.53 = = = 0.57 = = = = = = = = = = = = = = 0.58 = = = = = = = = = = ? = = ? ? ? = = = = = = = = = = = = 0.98 0.98 = = = = = 0.98 ? 0.97 = 0.98 = = = = 0.99 0.99 = = = = = = = = = 0.99 = = = = = = = = = = = = = = = = = = = ? 0.92 0.92 0.92 = ? ? = = = ? = 0.71 = = ? ? 0.85 0.85 0.95 = = 0.85 = 0.85 = 0.85 = = = = = = 1.00 1.00 = = = ? ? ? ? ? ? 1.00 = = ? 1.00 1.00 = 1.00 = = 1.00 = = = = = = ? ? 1.00 = = ? ? ? ? = 0.51 ? = 0.86 0.99 = 0.99 = = = 1.00 = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = ? ? 0.56 = = ? ? = = = = = = 0.67 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? 0.93 0.97 = ? = = = = = = 0.92 0.92 0.92 = = = = 0.90 ? ? = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = = = = = = = ? ? 0.71 = 0.86 ? = = = = ? 0.87 = = = = = 1.00 = ? 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? = = = = = = ? ? 0.73 0.74 = 0.65 = = = = = 0.65 = = = = 0.67 = = = 0.68 0.68 = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = 0.84 = = ? = 0.98 = = = 0.98 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? = = = = = = = ? ? = = = = = = = = = = ? = 0.77 = = = = = = = = = = = = = = = = = = = = 0.74 = = = = = = = = = = = = = = = = = = = = ? ? 0.77 = = ? = = = = ? = = = = = = = = = = = = = = = = = = = = 0.65 = = = = = = = = = = = = = = = = = = = = = = = = = = 0.94 0.95 = = = = = = = = = = 0.68 = 0.68 = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = ? = = = = = = = = ? ? ? ? 0.97 = 0.97 0.97 0.97 0.97 = = = = 0.73 = = = = = = = = = = = = = = 0.74 = = = = = = = = = = = = 0.83 = = = = = = = = = = = = = 0.75 = = = = = = = = = = = = 0.79 0.78 = = = = = = = = = = = = = = 0.75 = = = = = = = = = = = = = = = = = = = = = = = = = = 0.86 0.86 0.92 ? = = = = ? ? = = = = 0.78 = = = = 0.85 = 0.85 = = = = = = = 0.85 = = = = = = = = = = = = 0.84 = = = = = = = = = = = = = 0.72 0.74 0.79 ? ? ? ? = = 0.79 = = = = = = = = = ? = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = ? 0.95 = = = = = = = = = 0.99 1.00 = = = 1.00 1.00 = = 1.00 = 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 0.68 = = = = = = = = ? 0.93 = = = = 0.93 0.93 = = = 0.99 = = = = = = = 0.99 = = = = = = = = = = = = 0.99 = = = = = = = = = = = ? ? = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.91 0.95 = = = = = = = 0.58 = 0.57 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? = 0.99 = = = ? = 0.61 0.79 0.79 0.80 = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = 0.94 ? = = = = = 0.91 = 0.96 = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = 1.00 = = = = 1.00 = 0.70 = = ? ? ? ? = 0.75 0.75 = = = = = = = = = 0.82 = 0.82 = = = = = = = = = = = = = = = = = = = = 0.82 = = = = = = = = = = = 0.53 = ? ? ? ? 0.98 0.98 0.98 0.98 0.98 = 0.62 = 0.53 0.53 0.53 = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = ? ? ? 1.00 1.00 = = 1.00 ? 1.00 = 1.00 = = = 1.00 = 0.66 0.77 = = = = = = = = = 0.99 = 0.99 = = = = 1.00 = 1.00 = = = = = = = 1.00 = = = = = = = ? = = = = 1.00 = = = = ? = = = = = = = = 0.53 0.59 0.56 ? = 0.56 = = = = ? = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = ? = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.88 = = = = = = = = = ? = 1.00 1.00 1.00 1.00 ? 1.00 = = = = = = = = = 0.50 0.76 0.81 0.98 = 0.98 = = = = = = = = = = = = = = = = = = = = = = = 0.77 ? = = = = = = = = = = = = = = = = = = = = = = = = ? 0.56 = = = = = = = = = ? = 1.00 = = = = = = = = = = = = = = = = ? ? = = 0.99 = = = = = = = = = = = = = 0.73 = = = = = = = ? ? 0.89 0.92 0.69 = = 0.89 0.52 0.92 = 1.00 = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 ? ? ? = 1.00 1.00 ? = = = = = = = = = = = = = = ? ? = = = = ? ? 0.72 = = = 0.73 = = = = = = = = 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 = = = = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 = = = 0.66 = = = = = = ? ? ? 0.66 = = = = ? 0.66 = = 0.96 = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END PHASEPROBS