Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000192 00000 ------------ G 0.93 0.77 1.00 1.00 1.00 0.96 T 0.07 0.23 0.00 0.00 0.00 0.04 0000 --- --- --- --- 000269 00000 ------------ C 1.00 1.00 0.98 1.00 1.00 0.99 T 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 000505 00000 ------------ A 0.97 0.95 1.00 1.00 1.00 0.99 G 0.03 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000603 00000 ------------ C 0.60 0.50 1.00 0.95 1.00 0.87 T 0.40 0.50 0.00 0.05 0.00 0.13 0000 --- --- --- --- 000713 00000 ------------ A 0.87 0.73 1.00 1.00 1.00 0.95 G 0.13 0.27 0.00 0.00 0.00 0.05 0000 --- --- --- --- 000813 00000 ------------ G 0.90 0.91 0.59 0.93 0.77 0.80 A 0.10 0.09 0.41 0.07 0.23 0.20 0000 --- --- --- --- 000860 00000 ------------ - 0.00 0.00 0.00 0.10 0.04 0.03 + 1.00 1.00 1.00 0.90 0.96 0.97 0000 --- --- --- --- 000872 00000 ------------ G 0.97 0.95 1.00 1.00 1.00 0.99 C 0.03 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001202 00000 ------------ T 0.96 1.00 1.00 1.00 1.00 0.99 A 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001269 00000 ------------ C 0.73 0.78 0.71 0.93 0.73 0.78 A 0.27 0.22 0.29 0.07 0.27 0.22 0000 --- --- --- --- 001938 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 002015 00020 5' UTR C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 002280 00000 ------------ G 0.92 1.00 1.00 0.97 1.00 0.99 T 0.08 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- 002369 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 017106 00000 ------------ G 0.97 1.00 0.90 0.91 1.00 0.95 A 0.03 0.00 0.10 0.09 0.00 0.05 0000 --- --- --- --- 017188 00115 5' UTR A 0.93 0.79 1.00 1.00 1.00 0.96 G 0.07 0.21 0.00 0.00 0.00 0.04 0000 --- --- --- --- 017238 00165 SYNON C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0011 CTA TTA LEU(L) LEU(L) 017332 00000 ------------ A 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 017409 00000 ------------ T 1.00 1.00 0.90 0.95 1.00 0.97 C 0.00 0.00 0.10 0.05 0.00 0.03 0000 --- --- --- --- 017468 00248 SYNON G 0.37 0.38 0.57 0.86 0.73 0.62 C 0.63 0.62 0.43 0.14 0.27 0.38 0038 CTG CTC LEU(L) LEU(L) 017898 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 017953 00519 NON-SYN G 1.00 1.00 0.95 1.00 1.00 0.99 T 0.00 0.00 0.05 0.00 0.00 0.01 0129 GCT TCT ALA(A) SER(S) 018628 00000 ------------ A 0.37 0.38 0.60 0.86 0.74 0.63 G 0.63 0.62 0.40 0.14 0.26 0.37 0000 --- --- --- --- 018711 00000 ------------ C 0.97 1.00 1.00 0.98 1.00 0.99 T 0.03 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 018833 00000 ------------ C 1.00 1.00 0.97 1.00 1.00 0.99 T 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 018868 00680 SYNON C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0182 GAC GAT ASP(D) ASP(D) 019101 00000 ------------ T 0.92 0.79 1.00 1.00 1.00 0.96 C 0.08 0.21 0.00 0.00 0.00 0.04 0000 --- --- --- --- 019181 00000 ------------ C 0.25 0.17 0.60 0.88 0.68 0.57 T 0.75 0.83 0.40 0.12 0.32 0.43 0000 --- --- --- --- 019352 00000 ------------ C 0.27 0.17 0.57 0.86 0.71 0.58 G 0.73 0.83 0.43 0.14 0.29 0.42 0000 --- --- --- --- 019354 00000 ------------ G 0.42 0.62 0.57 0.86 0.71 0.66 A 0.58 0.38 0.43 0.14 0.29 0.34 0000 --- --- --- --- 019374 00000 ------------ C 0.27 0.17 0.57 0.86 0.71 0.58 T 0.73 0.83 0.43 0.14 0.29 0.42 0000 --- --- --- --- 019383 00000 ------------ T 0.23 0.17 0.57 0.86 0.71 0.58 C 0.77 0.83 0.43 0.14 0.29 0.42 0000 --- --- --- --- 019413 00000 ------------ C 0.29 0.17 0.57 0.82 0.71 0.57 T 0.71 0.83 0.43 0.18 0.29 0.43 0000 --- --- --- --- 019425 00000 ------------ G 0.27 0.17 0.57 0.82 0.71 0.57 A 0.73 0.83 0.43 0.18 0.29 0.43 0000 --- --- --- --- 019489 00000 ------------ - 0.30 0.17 0.52 0.86 0.69 0.56 + 0.70 0.83 0.48 0.14 0.31 0.44 0000 --- --- --- --- 019601 00000 ------------ T 0.82 0.70 1.00 1.00 1.00 0.93 C 0.18 0.30 0.00 0.00 0.00 0.07 0000 --- --- --- --- 019630 00000 ------------ T 0.95 1.00 1.00 1.00 1.00 0.99 C 0.05 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 019851 00899 SYNON A 0.27 0.17 0.58 0.88 0.69 0.58 G 0.73 0.83 0.42 0.12 0.31 0.42 0255 GTA GTG VAL(V) VAL(V) 020092 00000 ------------ C 0.17 0.14 0.54 0.95 0.88 0.55 T 0.83 0.86 0.46 0.05 0.12 0.45 0000 --- --- --- --- 020374 00000 ------------ A 0.92 0.75 1.00 1.00 1.00 0.96 G 0.08 0.25 0.00 0.00 0.00 0.04 0000 --- --- --- --- 020908 00000 ------------ - 0.93 0.96 1.00 1.00 1.00 0.98 + 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 020956 00000 ------------ G 0.29 0.17 0.57 0.86 0.73 0.59 A 0.71 0.83 0.43 0.14 0.27 0.41 0000 --- --- --- --- 020971 00000 ------------ A 0.29 0.17 0.57 0.86 0.73 0.59 G 0.71 0.83 0.43 0.14 0.27 0.41 0000 --- --- --- --- 021000 00000 ------------ C 0.93 0.79 1.00 1.00 1.00 0.96 G 0.07 0.21 0.00 0.00 0.00 0.04 0000 --- --- --- --- 022473 01415 SYNON G 0.93 0.77 1.00 1.00 1.00 0.96 A 0.07 0.23 0.00 0.00 0.00 0.04 0427 AAG AAA LYS(K) LYS(K) 022522 00000 ------------ G 0.90 0.77 1.00 1.00 1.00 0.96 C 0.10 0.23 0.00 0.00 0.00 0.04 0000 --- --- --- --- 022785 01497 NON-SYN T 0.31 0.30 0.63 0.88 0.75 0.65 A 0.69 0.70 0.37 0.12 0.25 0.35 0455 TTA ATA LEU(L) ILE(I) 022977 01546 NON-SYN A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0471 AAT AGT ASN(N) SER(S) 023092 01661 SYNON C 0.93 0.95 1.00 1.00 1.00 0.98 T 0.07 0.05 0.00 0.00 0.00 0.02 0509 TTC TTT PHE(F) PHE(F) 023165 00000 ------------ C 0.27 0.18 0.57 0.86 0.73 0.59 T 0.73 0.82 0.43 0.14 0.27 0.41 0000 --- --- --- --- 026122 00000 ------------ G 1.00 1.00 1.00 0.84 1.00 0.96 T 0.00 0.00 0.00 0.16 0.00 0.04 0000 --- --- --- --- 026180 00000 ------------ - 0.64 0.58 0.43 0.14 0.25 0.37 + 0.36 0.42 0.57 0.86 0.75 0.63 0000 --- --- --- --- 026182 00000 ------------ G 0.92 0.79 0.98 1.00 1.00 0.96 C 0.08 0.21 0.02 0.00 0.00 0.04 0000 --- --- --- --- 026242 01727 SYNON G 1.00 1.00 0.93 0.77 0.92 0.91 A 0.00 0.00 0.07 0.23 0.08 0.09 0531 AAG AAA LYS(K) LYS(K) 026755 00000 ------------ G 0.97 0.79 1.00 1.00 1.00 0.97 A 0.03 0.21 0.00 0.00 0.00 0.03 0000 --- --- --- --- 027871 00000 ------------ T 0.87 0.75 1.00 1.00 1.00 0.95 C 0.13 0.25 0.00 0.00 0.00 0.05 0000 --- --- --- --- 028186 00000 ------------ G 0.93 0.96 0.93 0.77 0.92 0.89 A 0.07 0.04 0.07 0.23 0.08 0.11 0000 --- --- --- --- 028350 00000 ------------ G 0.91 0.96 0.93 0.79 0.96 0.90 T 0.09 0.04 0.07 0.21 0.04 0.10 0000 --- --- --- --- 029242 02626 NON-SYN A 0.31 0.17 0.60 0.85 0.73 0.59 G 0.69 0.83 0.40 0.15 0.27 0.41 0831 CAG CGG GLN(Q) ARG(R) 029347 00000 ------------ G 1.00 1.00 0.97 1.00 1.00 0.99 C 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 029447 02742 NON-SYN A 0.92 0.75 1.00 1.00 1.00 0.95 G 0.08 0.25 0.00 0.00 0.00 0.05 0870 ATG GTG MET(M) VAL(V) 029512 00000 ------------ G 0.87 0.75 1.00 1.00 1.00 0.95 A 0.13 0.25 0.00 0.00 0.00 0.05 0000 --- --- --- --- 029531 00000 ------------ C 1.00 0.92 1.00 1.00 1.00 0.99 A 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 029742 00000 ------------ T 0.97 0.96 1.00 1.00 1.00 0.99 G 0.03 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 029883 00000 ------------ A 0.80 0.88 0.57 0.81 0.67 0.73 G 0.20 0.12 0.43 0.19 0.33 0.27 0000 --- --- --- --- 029926 02899 NON-SYN G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0922 CGC CAC ARG(R) HIS(H) 029931 02904 NON-SYN C 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0924 CGG TGG ARG(R) TRP(W) 030141 00000 ------------ C 0.96 1.00 0.98 0.97 1.00 0.98 T 0.04 0.00 0.02 0.03 0.00 0.02 0000 --- --- --- --- 030155 00000 ------------ C 1.00 1.00 1.00 0.97 1.00 0.99 T 0.00 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- 030174 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 030508 03184 NON-SYN T 1.00 1.00 0.93 0.93 1.00 0.97 C 0.00 0.00 0.07 0.07 0.00 0.03 1017 ATC ACC ILE(I) THR(T) 030511 03187 NON-SYN C 0.61 0.71 0.60 0.80 0.70 0.69 T 0.39 0.29 0.40 0.20 0.30 0.31 1018 CCG CTG PRO(P) LEU(L) 030594 00000 ------------ C 0.36 0.46 0.57 0.77 0.69 0.60 A 0.64 0.54 0.42 0.23 0.31 0.40 0000 --- --- --- --- 030601 00000 ------------ C 0.96 1.00 0.88 0.98 1.00 0.96 T 0.04 0.00 0.12 0.02 0.00 0.04 0000 --- --- --- --- 030688 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 030843 00000 ------------ C 1.00 1.00 0.95 1.00 1.00 0.99 T 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 030908 00000 ------------ - 0.21 0.32 0.27 0.48 0.69 0.42 + 0.79 0.68 0.73 0.52 0.31 0.58 0000 --- --- --- --- 032896 00000 ------------ A 0.90 0.67 0.93 0.76 0.92 0.85 T 0.10 0.33 0.07 0.24 0.08 0.15 0000 --- --- --- --- 032939 00000 ------------ G 0.97 0.88 1.00 1.00 1.00 0.98 A 0.03 0.12 0.00 0.00 0.00 0.02 0000 --- --- --- --- 033280 00000 ------------ T 1.00 1.00 0.97 0.98 1.00 0.99 C 0.00 0.00 0.03 0.02 0.00 0.01 0000 --- --- --- --- 033339 00000 ------------ G 1.00 1.00 0.97 1.00 1.00 0.99 A 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 034171 04265 3' UTR C 0.75 0.80 1.00 1.00 1.00 0.95 T 0.25 0.20 0.00 0.00 0.00 0.05 0000 --- --- --- --- 034272 00000 ------------ C 1.00 0.90 1.00 1.00 1.00 0.99 T 0.00 0.10 0.00 0.00 0.00 0.01 0000 --- --- --- --- 034416 00000 ------------ C 1.00 1.00 0.90 0.82 0.90 0.90 T 0.00 0.00 0.10 0.18 0.10 0.10 0000 --- --- --- --- 034723 00000 ------------ C 0.92 1.00 1.00 1.00 1.00 0.99 T 0.08 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 000860: TT 019489: A 020908: A 026180: A 030908: ATC