Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000108 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 000163 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 000173 00000 ------------ C 0.97 0.79 1.00 0.98 1.00 0.96 T 0.03 0.21 0.00 0.02 0.00 0.04 0000 --- --- --- --- 000174 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 000277 00000 ------------ T 0.87 0.79 1.00 0.98 1.00 0.95 C 0.13 0.21 0.00 0.02 0.00 0.05 0000 --- --- --- --- 000326 00000 ------------ C 0.90 1.00 1.00 1.00 1.00 0.98 G 0.10 0.00 0.00 0.00 0.00 0.02 0000 --- --- --- --- 000569 00000 ------------ G 0.90 1.00 1.00 1.00 1.00 0.98 A 0.10 0.00 0.00 0.00 0.00 0.02 0000 --- --- --- --- 000626 00000 ------------ - 0.67 0.42 0.89 0.57 0.41 0.60 + 0.33 0.58 0.11 0.42 0.59 0.40 0000 --- --- --- --- 001277 00000 ------------ C 1.00 1.00 1.00 1.00 0.94 0.98 T 0.00 0.00 0.00 0.00 0.06 0.02 0000 --- --- --- --- 001331 00000 ------------ C 1.00 1.00 0.95 0.98 1.00 0.98 T 0.00 0.00 0.05 0.02 0.00 0.02 0000 --- --- --- --- 001344 00000 ------------ G 1.00 1.00 0.95 1.00 1.00 0.99 A 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 001448 00000 ------------ G 0.97 0.83 1.00 1.00 1.00 0.97 A 0.03 0.17 0.00 0.00 0.00 0.03 0000 --- --- --- --- 001571 00000 ------------ - 0.03 0.12 0.00 0.00 0.00 0.02 + 0.97 0.88 1.00 1.00 1.00 0.98 0000 --- --- --- --- 001842 00000 ------------ C 1.00 1.00 0.95 0.93 0.98 0.97 T 0.00 0.00 0.05 0.07 0.02 0.03 0000 --- --- --- --- 001855 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 001861 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 001903 00000 ------------ T 1.00 1.00 1.00 1.00 0.96 0.99 G 0.00 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- 002043 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 002061 00000 ------------ C 0.73 0.75 0.84 0.86 0.93 0.84 T 0.27 0.25 0.16 0.14 0.07 0.16 0000 --- --- --- --- 002381 00000 ------------ C 1.00 1.00 1.00 0.85 1.00 0.97 T 0.00 0.00 0.00 0.15 0.00 0.03 0000 --- --- --- --- 002602 00000 ------------ G 1.00 1.00 0.95 0.97 1.00 0.98 A 0.00 0.00 0.05 0.03 0.00 0.02 0000 --- --- --- --- 002694 00000 ------------ G 1.00 1.00 0.95 0.95 0.98 0.97 A 0.00 0.00 0.05 0.05 0.02 0.03 0000 --- --- --- --- 002719 00000 ------------ A 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 002811 00134 SYNON G 0.90 1.00 1.00 1.00 1.00 0.98 A 0.10 0.00 0.00 0.00 0.00 0.02 0018 CAG CAA GLN(Q) GLN(Q) 002882 00205 NON-SYN C 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0042 TCC TAC SER(S) TYR(Y) 002934 00257 SYNON C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0059 GAC GAT ASP(D) ASP(D) 003042 00365 SYNON C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0095 AGC AGT SER(S) SER(S) 003054 00377 SYNON A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0099 GCA GCG ALA(A) ALA(A) 003084 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 003267 00440 SYNON G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0120 TCG TCA SER(S) SER(S) 003273 00446 SYNON G 0.97 0.79 1.00 0.95 1.00 0.96 A 0.03 0.21 0.00 0.05 0.00 0.04 0122 TCG TCA SER(S) SER(S) 003560 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 003639 00000 ------------ G 1.00 1.00 1.00 0.95 0.94 0.97 T 0.00 0.00 0.00 0.05 0.06 0.03 0000 --- --- --- --- 003854 00000 ------------ C 0.90 0.92 0.93 0.95 0.94 0.93 T 0.10 0.08 0.07 0.05 0.06 0.07 0000 --- --- --- --- 004215 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 004216 00000 ------------ T 0.93 0.92 0.89 0.83 0.97 0.91 G 0.07 0.08 0.11 0.17 0.03 0.09 0000 --- --- --- --- 004286 00000 ------------ G 0.95 1.00 1.00 1.00 1.00 0.99 A 0.05 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004629 00806 SYNON G 0.90 0.92 1.00 1.00 0.94 0.96 A 0.10 0.08 0.00 0.00 0.06 0.04 0242 GAG GAA GLU(E) GLU(E) 004776 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 004792 00000 ------------ A 0.88 1.00 1.00 1.00 1.00 0.98 G 0.12 0.00 0.00 0.00 0.00 0.02 0000 --- --- --- --- 004920 00000 ------------ A 0.96 0.82 1.00 1.00 1.00 0.97 G 0.04 0.18 0.00 0.00 0.00 0.03 0000 --- --- --- --- 005247 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 005525 00000 ------------ G 1.00 1.00 1.00 0.95 0.95 0.98 A 0.00 0.00 0.00 0.05 0.05 0.02 0000 --- --- --- --- 005990 01194 NON-SYN G 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0372 GTC ATC VAL(V) ILE(I) 006022 01226 SYNON C 0.93 0.75 0.86 0.84 0.96 0.88 A 0.07 0.25 0.14 0.16 0.04 0.12 0382 GGC GGA GLY(G) GLY(G) 006255 00000 ------------ C 1.00 1.00 0.94 0.97 0.97 0.97 T 0.00 0.00 0.06 0.03 0.03 0.03 0000 --- --- --- --- 006264 00000 ------------ C 0.91 0.85 1.00 0.97 1.00 0.96 A 0.09 0.15 0.00 0.03 0.00 0.04 0000 --- --- --- --- 006951 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 006975 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 007001 00000 ------------ C 0.95 1.00 1.00 1.00 1.00 0.99 T 0.05 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 007013 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 007035 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 007249 00000 ------------ A 1.00 1.00 1.00 0.98 1.00 0.99 G 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 007425 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 008248 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 008421 00000 ------------ C 0.93 0.95 0.82 0.97 0.89 0.91 T 0.07 0.05 0.18 0.03 0.11 0.09 0000 --- --- --- --- 008648 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 008760 00000 ------------ C 0.90 0.83 0.98 0.92 0.59 0.84 G 0.10 0.17 0.02 0.08 0.41 0.16 0000 --- --- --- --- 009175 00000 ------------ C 1.00 1.00 0.98 0.93 0.96 0.97 T 0.00 0.00 0.02 0.07 0.04 0.03 0000 --- --- --- --- 009187 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 009222 00000 ------------ - 0.00 0.00 0.02 0.07 0.04 0.03 + 1.00 1.00 0.98 0.93 0.96 0.97 0000 --- --- --- --- 009542 00000 ------------ A 0.97 0.96 0.98 0.91 0.60 0.86 G 0.03 0.04 0.02 0.09 0.40 0.14 0000 --- --- --- --- 009653 01632 NON-SYN G 1.00 1.00 0.95 1.00 1.00 0.99 A 0.00 0.00 0.05 0.00 0.00 0.01 0518 GTG ATG VAL(V) MET(M) 010030 01899 NON-SYN C 0.97 0.92 1.00 1.00 1.00 0.98 T 0.03 0.08 0.00 0.00 0.00 0.02 0607 CGC TGC ARG(R) CYS(C) 010158 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 010236 00000 ------------ G 0.97 0.92 1.00 1.00 1.00 0.98 A 0.03 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 010239 00000 ------------ T 0.73 0.67 0.93 0.82 0.56 0.75 G 0.27 0.33 0.07 0.18 0.44 0.25 0000 --- --- --- --- 010500 00000 ------------ A 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 010518 00000 ------------ G 0.86 0.71 0.93 0.82 0.57 0.77 A 0.14 0.29 0.07 0.18 0.43 0.23 0000 --- --- --- --- 010545 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 010566 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 010785 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 011584 00000 ------------ C 0.89 1.00 1.00 1.00 1.00 0.98 T 0.11 0.00 0.00 0.00 0.00 0.02 0000 --- --- --- --- 011609 00000 ------------ C 1.00 1.00 1.00 0.98 0.96 0.98 T 0.00 0.00 0.00 0.02 0.04 0.02 0000 --- --- --- --- 011616 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 G 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 011646 00000 ------------ - 0.96 0.96 1.00 0.98 1.00 0.98 + 0.04 0.04 0.00 0.02 0.00 0.02 0000 --- --- --- --- 012631 00000 ------------ C 1.00 1.00 1.00 0.95 0.63 0.89 G 0.00 0.00 0.00 0.05 0.37 0.11 0000 --- --- --- --- 012638 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 012653 00000 ------------ A 0.77 0.62 0.69 0.68 0.57 0.66 G 0.23 0.38 0.31 0.32 0.43 0.34 0000 --- --- --- --- 012991 00000 ------------ G 0.97 0.96 1.00 0.95 0.96 0.97 A 0.03 0.04 0.00 0.05 0.04 0.03 0000 --- --- --- --- 013170 00000 ------------ - 0.00 0.00 0.05 0.05 0.00 0.02 + 1.00 1.00 0.95 0.95 1.00 0.98 0000 --- --- --- --- 013393 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 013881 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 013945 00000 ------------ G 0.93 0.96 0.80 0.98 0.94 0.92 A 0.07 0.04 0.20 0.02 0.06 0.08 0000 --- --- --- --- 013985 00000 ------------ T 0.93 0.96 1.00 1.00 1.00 0.98 C 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 014014 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 014120 00000 ------------ T 0.83 0.83 1.00 0.91 0.58 0.83 C 0.17 0.17 0.00 0.09 0.42 0.17 0000 --- --- --- --- 014363 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 014432 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 014607 00000 ------------ A 1.00 1.00 0.97 1.00 1.00 0.99 C 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 014721 00000 ------------ T 1.00 1.00 0.97 1.00 1.00 0.99 C 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 014733 00000 ------------ G 0.93 1.00 1.00 1.00 1.00 0.99 C 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 014778 00000 ------------ G 0.93 0.95 0.79 0.98 0.93 0.91 C 0.07 0.05 0.21 0.02 0.07 0.09 0000 --- --- --- --- 014962 00000 ------------ C 0.93 0.83 1.00 0.98 1.00 0.96 G 0.07 0.17 0.00 0.02 0.00 0.04 0000 --- --- --- --- 015609 02344 NON-SYN C 0.90 1.00 1.00 1.00 1.00 0.98 T 0.10 0.00 0.00 0.00 0.00 0.02 0755 TCG TTG SER(S) LEU(L) 015750 02485 NON-SYN A 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0802 GAC GTC ASP(D) VAL(V) 015803 02538 3' UTR T 0.73 0.75 0.80 0.84 0.48 0.71 C 0.27 0.25 0.20 0.16 0.52 0.29 0000 --- --- --- --- 015917 02652 3' UTR - 0.97 1.00 1.00 1.00 1.00 0.99 + 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 015961 02696 3' UTR C 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 016421 00000 ------------ A 1.00 1.00 0.95 1.00 1.00 0.99 G 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 016527 00000 ------------ G 0.53 0.58 0.31 0.39 0.72 0.50 A 0.47 0.42 0.69 0.61 0.28 0.50 0000 --- --- --- --- 016868 00000 ------------ A 0.90 1.00 1.00 0.93 0.58 0.86 G 0.10 0.00 0.00 0.07 0.42 0.14 0000 --- --- --- --- 017347 00000 ------------ T 0.93 1.00 1.00 1.00 1.00 0.99 C 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 017649 00000 ------------ C 1.00 1.00 1.00 0.93 0.58 0.88 G 0.00 0.00 0.00 0.07 0.42 0.12 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 000626: G 001571: CAGAACTCGGCA 009222: CTCATTATACAAGTCA 011646: CA 013170: CA 015917: GGGGAGTCCAGGGCTCCCGGAG