Site Genotype1 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype2 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype3 AD-pop ED-pop HD-pop XD-pop Total-pop AD-chi2 ED-chi2 HD-chi2 XD-chi2 Total-chi2 000340 AA 24 16 15 22 77 AC 0 3 2 0 5 CC 0 0 1 0 1 0.000 0.140 3.445 0.000 5.366 000682 AA 18 18 15 13 64 AG 1 1 5 8 15 GG 0 0 0 1 1 0.014 0.014 0.408 0.027 0.013 000703 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 18 19 20 22 79 0.014 0.000 0.000 0.000 0.003 000932 AA 0 0 0 0 0 AC 0 0 1 0 1 CC 15 19 18 24 76 0.000 0.000 0.014 0.000 0.003 000940 AA 0 2 6 17 25 AC 9 5 8 7 29 CC 6 12 5 0 23 2.755 1.406 0.460 0.700 4.669 000963 GG 15 19 17 24 75 GT 0 0 2 0 2 TT 0 0 0 0 0 0.000 0.000 0.059 0.000 0.013 001058 AA 15 20 12 12 59 AG 0 0 7 10 17 GG 0 0 0 2 2 0.000 0.000 0.969 0.002 0.325 001064 CC 0 11 4 0 15 CG 2 6 8 7 23 GG 12 3 7 17 39 0.083 1.633 0.353 0.700 8.813 001211 AA 0 0 0 0 0 AC 1 0 0 0 1 CC 21 20 21 24 86 0.012 0.000 0.000 0.000 0.003 001617 -- 0 0 0 0 0 +- 2 0 0 0 2 ++ 25 21 22 23 91 0.040 0.000 0.000 0.000 0.011 002003 CC 13 18 16 8 55 CT 0 0 2 9 11 TT 0 0 0 7 7 0.000 0.000 0.062 1.484 16.063 002083 -- 6 11 5 0 22 +- 6 4 7 7 24 ++ 0 3 6 17 26 1.333 3.583 0.870 0.700 7.901 003671 AA 0 0 0 0 0 AG 2 0 1 0 3 GG 24 17 18 19 78 0.042 0.000 0.014 0.000 0.029 003699 CC 21 13 12 18 64 CT 5 4 7 2 18 TT 0 1 0 0 1 0.294 0.720 0.969 0.055 0.045 003852 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 27 21 19 22 89 0.000 0.000 0.000 0.011 0.003 005292 AA 0 8 4 0 12 AT 5 9 9 5 28 TT 22 5 9 17 53 0.281 0.609 0.414 0.362 5.933 005853 AA 26 22 21 24 93 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 005943 AA 26 21 15 12 74 AG 1 1 7 10 19 GG 0 0 0 2 2 0.010 0.012 0.787 0.002 0.344 006046 -- 0 0 0 0 0 +- 0 0 1 0 1 ++ 26 22 20 23 91 0.000 0.000 0.012 0.000 0.003 006218 AA 0 0 0 0 0 AG 0 4 3 0 7 GG 26 18 17 23 84 0.000 0.220 0.131 0.000 0.146 006625 AA 0 0 0 6 6 AC 0 0 2 9 11 CC 26 22 19 8 75 0.000 0.000 0.053 1.028 18.914 006627 CC 26 22 19 8 75 CT 0 0 2 9 11 TT 0 0 0 6 6 0.000 0.000 0.053 1.028 18.914 007236 AA 0 10 5 0 15 AG 6 8 9 7 30 GG 21 2 8 16 47 0.422 0.045 0.609 0.741 6.127 007240 AA 1 0 0 0 1 AG 14 1 1 0 16 GG 12 20 21 23 76 1.600 0.012 0.012 0.000 0.023 007294 AA 0 0 0 0 0 AG 4 0 0 0 4 GG 23 21 22 23 89 0.173 0.000 0.000 0.000 0.045 007373 CC 27 18 21 23 89 CT 0 1 1 0 2 TT 0 0 0 0 0 0.000 0.014 0.012 0.000 0.011 007382 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 25 20 22 23 90 0.040 0.000 0.000 0.000 0.011 007397 GG 26 21 22 23 92 GT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 007412 AA 25 19 22 23 89 AG 2 0 0 0 2 GG 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 007692 AA 12 12 6 0 30 AG 14 7 8 7 36 GG 1 3 7 16 27 1.600 1.223 1.173 0.741 4.708 007848 AA 21 3 8 16 48 AG 6 8 9 7 30 GG 0 11 5 0 16 0.422 0.577 0.609 0.741 7.266 008042 CC 1 0 0 0 1 CT 14 1 1 0 16 TT 11 21 21 23 76 1.811 0.012 0.012 0.000 0.023 010498 AA 19 16 13 20 68 AG 5 4 7 3 19 GG 0 2 1 0 3 0.324 3.327 0.002 0.112 1.241 011009 CC 23 21 18 23 85 CT 1 1 4 0 6 TT 0 0 0 0 0 0.011 0.012 0.220 0.000 0.106 011103 CC 0 0 0 0 0 CT 3 0 0 0 3 TT 24 22 22 23 91 0.093 0.000 0.000 0.000 0.025 011229 GG 0 0 0 0 0 GT 1 0 0 0 1 TT 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 011283 CC 22 16 13 20 71 CT 5 4 8 4 21 TT 0 2 1 0 3 0.281 3.327 0.027 0.198 0.829 011432 CC 27 18 19 24 88 CT 0 4 3 0 7 TT 0 0 0 0 0 0.000 0.220 0.118 0.000 0.139 011501 AA 25 22 22 23 92 AC 2 0 0 0 2 CC 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 011535 CC 11 12 6 0 29 CG 12 7 9 7 35 GG 1 3 7 16 27 1.059 1.223 0.714 0.741 4.831 015374 AA 9 3 8 16 36 AG 10 8 8 7 33 GG 3 11 6 0 20 0.007 0.577 1.564 0.741 4.859 015621 GG 20 22 21 23 86 GT 4 0 1 0 5 TT 0 0 0 0 0 0.198 0.000 0.012 0.000 0.073 015648 CC 0 0 0 0 0 CT 2 0 0 0 2 TT 23 22 22 23 90 0.043 0.000 0.000 0.000 0.011 016125 CC 27 22 20 8 77 CG 0 0 2 8 10 GG 0 0 0 6 6 0.000 0.000 0.050 1.564 21.829 016320 CC 26 21 15 11 73 CT 1 1 7 10 19 TT 0 0 0 2 2 0.010 0.012 0.787 0.017 0.325 016490 AA 0 1 0 0 1 AG 1 5 5 3 14 GG 24 16 17 18 75 0.010 0.499 0.362 0.124 0.141 016496 CC 20 16 13 19 68 CT 4 4 8 4 20 TT 0 2 1 0 3 0.198 3.327 0.027 0.209 0.957 016498 CC 0 0 0 0 0 CG 0 1 0 0 1 GG 25 21 22 23 91 0.000 0.012 0.000 0.000 0.003 016564 AA 0 0 0 0 0 AC 0 0 1 0 1 CC 25 22 21 23 91 0.000 0.000 0.012 0.000 0.003 016868 CC 23 16 17 18 74 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.014 0.003 016947 AA 14 12 8 8 42 AG 10 3 7 9 29 GG 0 1 0 2 3 1.662 1.335 1.389 0.052 0.537 016964 CC 0 0 0 0 0 CT 2 0 0 0 2 TT 25 21 22 24 92 0.040 0.000 0.000 0.000 0.011 017087 GG 0 0 0 0 0 GT 3 0 1 0 4 TT 23 21 21 24 89 0.097 0.000 0.012 0.000 0.045 017108 -- 22 15 13 19 69 +- 5 4 8 4 21 ++ 0 2 1 0 3 0.281 3.070 0.027 0.209 0.756 017218 AA 0 0 0 2 2 AG 1 1 7 10 19 GG 26 20 15 12 73 0.010 0.012 0.787 0.002 0.325 018082 CC 12 12 6 0 30 CT 14 7 9 7 37 TT 1 3 7 16 27 1.600 1.223 0.714 0.741 4.223 018263 AA 0 0 0 0 0 AG 0 4 3 0 7 GG 27 18 19 23 87 0.000 0.220 0.118 0.000 0.141 018288 -- 1 0 0 0 1 +- 4 0 0 0 4 ++ 22 22 22 23 89 1.688 0.000 0.000 0.000 9.113 018483 -- 1 3 7 16 27 +- 12 7 9 7 35 ++ 14 12 6 0 32 0.667 1.223 0.714 0.741 6.027 018534 CC 0 0 0 0 0 CT 0 1 1 0 2 TT 27 21 21 23 92 0.000 0.012 0.012 0.000 0.011 018631 CC 21 3 8 16 48 CT 6 8 9 7 30 TT 0 11 5 0 16 0.422 0.577 0.609 0.741 7.266 018766 AA 2 0 0 0 2 AC 14 1 1 0 16 CC 11 21 21 23 76 0.750 0.012 0.012 0.000 1.032 018791 AA 0 0 0 0 0 AG 1 2 1 0 4 GG 26 20 21 23 90 0.010 0.050 0.012 0.000 0.044 019175 AA 8 7 13 13 41 AG 2 0 0 0 2 GG 0 0 0 0 0 0.123 0.000 0.000 0.000 0.024 019412 AA 27 21 22 23 93 AG 0 1 0 0 1 GG 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 019434 AA 0 2 1 0 3 AG 5 4 8 4 21 GG 22 16 13 20 71 0.281 3.327 0.027 0.198 0.829 019506 GG 1 0 0 0 1 GT 8 0 1 0 9 TT 18 22 21 24 85 0.009 0.000 0.012 0.000 1.644 019539 CC 26 19 22 24 91 CT 1 3 0 0 4 TT 0 0 0 0 0 0.010 0.118 0.000 0.000 0.044 019550 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 019562 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 019600 CC 0 0 0 0 0 CT 0 1 0 0 1 TT 27 21 22 23 93 0.000 0.012 0.000 0.000 0.003 019844 CC 1 3 6 16 26 CG 10 7 9 7 33 GG 10 11 6 0 27 0.583 1.018 0.429 0.741 4.647 019897 GG 0 0 0 0 0 GT 1 0 0 0 1 TT 26 22 21 23 92 0.010 0.000 0.000 0.000 0.003 019915 GG 27 20 21 23 91 GT 0 2 0 0 2 TT 0 0 0 0 0 0.000 0.050 0.000 0.000 0.011 020009 CC 0 0 0 0 0 CG 4 0 0 0 4 GG 23 22 21 23 89 0.173 0.000 0.000 0.000 0.045 020042 GG 27 18 18 23 86 GT 0 4 3 0 7 TT 0 0 0 0 0 0.000 0.220 0.124 0.000 0.142 020115 GG 15 22 20 23 80 GT 10 0 1 0 11 TT 2 0 0 0 2 0.034 0.000 0.012 0.000 3.808 020147 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 27 21 21 23 92 0.000 0.012 0.000 0.000 0.003 020246 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 26 22 22 23 93 0.010 0.000 0.000 0.000 0.003 020407 CC 20 12 21 17 70 CG 2 0 0 0 2 GG 0 0 0 0 0 0.050 0.000 0.000 0.000 0.014 020414 -- 1 0 0 0 1 +- 8 0 1 0 9 ++ 13 12 20 17 62 0.027 0.000 0.012 0.000 0.938 021066 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 22 22 22 22 88 0.045 0.000 0.000 0.000 0.011 021175 AA 22 22 22 22 88 AG 2 0 0 0 2 GG 0 0 0 0 0 0.045 0.000 0.000 0.000 0.011 021201 CC 24 22 21 21 88 CG 0 0 1 0 1 GG 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 021590 CC 0 0 0 0 0 CT 0 0 0 1 1 TT 22 17 21 16 76 0.000 0.000 0.000 0.016 0.003 021606 CC 16 16 14 8 54 CT 6 1 7 8 22 TT 0 0 0 1 1 0.548 0.016 0.840 0.302 0.568 021658 AA 21 17 21 13 72 AG 0 0 0 4 4 GG 0 0 0 0 0 0.000 0.000 0.000 0.302 0.056 021684 AA 0 9 5 0 14 AC 3 5 9 5 22 CC 19 3 7 12 41 0.118 1.830 0.383 0.505 9.350 021914 AA 20 18 20 6 64 AG 0 0 2 7 9 GG 0 0 0 6 6 0.000 0.000 0.050 1.316 20.206 022007 AA 20 19 22 18 79 AG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.014 0.003 022086 CC 18 18 22 19 77 CG 2 0 0 0 2 GG 0 0 0 0 0 0.055 0.000 0.000 0.000 0.013 022112 AA 8 3 7 14 32 AG 11 6 8 5 30 GG 1 7 6 0 14 1.286 0.640 1.173 0.436 2.034 022270 CC 19 16 21 17 73 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.015 0.003 023323 CC 0 0 0 2 2 CT 1 1 6 10 18 TT 26 21 15 12 74 0.010 0.012 0.583 0.002 0.506 023626 AA 17 11 9 7 44 AG 1 0 2 9 12 GG 0 0 0 1 1 0.015 0.000 0.110 0.746 0.030 023670 GG 0 0 0 1 1 GT 1 0 1 6 8 TT 16 10 9 7 42 0.016 0.000 0.028 0.035 0.652 024084 AA 0 1 0 0 1 AG 0 1 0 0 1 GG 24 11 17 21 73 0.000 5.049 0.000 0.000 32.657 024179 AA 24 15 16 21 76 AG 0 0 1 0 1 GG 0 0 0 0 0 0.000 0.000 0.016 0.000 0.003 024347 CC 24 15 17 20 76 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.012 0.003 024508 CC 0 0 0 0 0 CT 0 0 2 0 2 TT 27 22 18 24 91 0.000 0.000 0.055 0.000 0.011 024739 GG 21 3 6 17 47 GT 6 8 9 7 30 TT 0 11 5 0 16 0.422 0.577 0.191 0.700 6.992 024877 -- 0 0 0 0 0 +- 0 0 1 0 1 ++ 25 22 18 24 89 0.000 0.000 0.014 0.000 0.003 024965 AA 25 22 20 24 91 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 025202 GG 25 22 21 24 92 GT 2 0 0 0 2 TT 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 025212 CC 10 3 7 17 37 CT 14 8 8 7 37 TT 3 11 6 0 20 0.337 0.577 1.173 0.700 3.257 025220 CC 12 12 6 0 30 CT 14 7 9 6 36 TT 1 3 6 17 27 1.600 1.223 0.429 0.517 4.708 025531 CC 0 0 0 0 0 CT 2 0 0 0 2 TT 25 21 22 24 92 0.040 0.000 0.000 0.000 0.011 025634 AA 0 0 0 0 0 AT 1 0 1 0 2 TT 26 21 21 24 92 0.010 0.000 0.012 0.000 0.011 026142 CC 26 19 20 24 89 CT 1 2 2 0 5 TT 0 0 0 0 0 0.010 0.053 0.050 0.000 0.070 026145 CC 26 21 22 24 93 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 026202 AA 0 0 0 0 0 AG 0 0 1 0 1 GG 27 21 21 24 93 0.000 0.000 0.012 0.000 0.003 026332 CC 1 3 7 17 28 CT 14 7 9 7 37 TT 12 10 6 0 28 1.600 0.818 0.714 0.700 3.882 026454 CC 2 10 6 0 18 CG 11 8 8 7 34 GG 10 3 8 17 38 0.179 0.429 1.564 0.700 3.789 026637 AA 0 0 0 0 0 AG 0 1 1 0 2 GG 23 21 21 24 89 0.000 0.012 0.012 0.000 0.011 026753 AA 10 21 21 24 76 AG 14 1 1 0 16 GG 2 0 0 0 2 0.934 0.012 0.012 0.000 1.032 026870 CC 21 3 8 17 49 CG 6 8 9 7 30 GG 0 11 5 0 16 0.422 0.577 0.609 0.700 7.542 027244 CC 12 11 6 0 29 CT 13 5 9 7 34 TT 1 3 7 17 28 1.236 2.466 0.714 0.700 5.809 027246 AA 26 18 22 24 90 AG 0 1 0 0 1 GG 0 0 0 0 0 0.000 0.014 0.000 0.000 0.003 027541 AA 25 21 15 12 73 AG 1 1 7 10 19 GG 0 0 0 2 2 0.010 0.012 0.787 0.002 0.325 027636 GG 24 22 22 24 92 GT 2 0 0 0 2 TT 0 0 0 0 0 0.042 0.000 0.000 0.000 0.011 028097 CC 21 22 21 24 88 CT 3 0 1 0 4 TT 0 0 0 0 0 0.107 0.000 0.012 0.000 0.045 028277 -- 2 0 0 0 2 +- 13 1 1 0 15 ++ 9 21 21 24 75 0.813 0.012 0.012 0.000 1.316 028379 AA 0 0 0 0 0 AG 0 2 1 0 3 GG 24 20 21 24 89 0.000 0.050 0.012 0.000 0.025 028478 GG 0 0 0 0 0 GT 0 0 0 1 1 TT 24 22 22 23 91 0.000 0.000 0.000 0.011 0.003 028628 CC 23 22 22 24 91 CG 1 0 0 0 1 GG 0 0 0 0 0 0.011 0.000 0.000 0.000 0.003 028789 CC 21 22 21 24 88 CG 3 0 1 0 4 GG 0 0 0 0 0 0.107 0.000 0.012 0.000 0.045 029557 AA 23 22 22 23 90 AC 0 0 0 1 1 CC 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 029638 -- 1 0 0 0 1 +- 4 0 0 0 4 ++ 20 21 22 23 86 1.469 0.000 0.000 0.000 8.779 030642 CC 15 18 17 14 64 CG 4 0 0 0 4 GG 0 0 0 0 0 0.263 0.000 0.000 0.000 0.062 030987 CC 18 13 16 14 61 CT 0 2 0 0 2 TT 0 1 0 0 1 0.000 2.939 0.000 0.000 14.984 031840 CC 0 0 0 0 0 CT 4 0 0 0 4 TT 23 22 21 22 88 0.173 0.000 0.000 0.000 0.045 031883 AA 21 3 7 16 47 AG 5 8 9 6 28 GG 0 10 5 0 15 0.294 0.429 0.383 0.548 7.451 032043 CC 26 22 21 22 91 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 032052 CC 22 22 20 22 86 CG 5 0 1 0 6 GG 0 0 0 0 0 0.281 0.000 0.012 0.000 0.105 032304 CC 0 0 0 0 0 CT 0 0 0 1 1 TT 27 22 21 22 92 0.000 0.000 0.000 0.011 0.003 032649 CC 1 0 0 0 1 CT 14 1 1 0 16 TT 12 21 20 23 76 1.600 0.012 0.012 0.000 0.023 033159 AA 0 0 0 0 0 AG 3 0 1 0 4 GG 24 22 20 24 90 0.093 0.000 0.012 0.000 0.044 033161 CC 0 0 0 0 0 CT 0 0 1 0 1 TT 27 22 20 24 93 0.000 0.000 0.012 0.000 0.003 033339 -- 0 10 5 0 15 +- 6 8 8 7 29 ++ 21 3 9 17 50 0.422 0.429 1.352 0.700 7.564 033555 CC 0 0 0 7 7 CT 0 0 1 9 10 TT 27 21 20 8 76 0.000 0.000 0.012 1.484 25.303 033755 AA 27 22 22 23 94 AG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 033785 CC 0 0 0 0 0 CT 7 0 0 0 7 TT 19 22 22 24 87 0.629 0.000 0.000 0.000 0.141 034087 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 034185 -- 2 0 0 0 2 +- 11 1 1 0 13 ++ 9 16 21 22 68 0.279 0.016 0.012 0.000 1.819 034780 -- 0 0 0 0 0 +- 0 0 0 1 1 ++ 27 22 22 23 94 0.000 0.000 0.000 0.011 0.003 034803 CC 25 18 21 24 88 CT 2 4 1 0 7 TT 0 0 0 0 0 0.040 0.220 0.012 0.000 0.139 034904 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 25 22 22 24 93 0.040 0.000 0.000 0.000 0.011 036021 CC 6 12 10 18 46 CT 9 1 0 0 10 TT 0 0 0 0 0 2.755 0.021 0.000 0.000 0.538 036549 CC 12 11 5 0 28 CT 14 7 9 6 36 TT 1 3 8 17 29 1.600 1.018 0.609 0.517 4.738 036658 CC 24 22 21 23 90 CT 3 0 0 0 3 TT 0 0 0 0 0 0.093 0.000 0.000 0.000 0.025 Note: AD: African_Descent ED: European_Descent HD: Hispanic_Descent XD: Asian_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 001617: GCG 002083: t 006046: ttaa 017108: T 018288: gcattaa 018483: tgtttt 020414: gcctg 024877: tgt 028277: ctatcctccctccctccctc 029638: GT 033339: cttt 034185: c 034780: cttc