RPA3 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
TTTTGTTTGG CAATTAGGAA GCTTACTAGT CAGCACTATA GTACTGTACT
50
AATACTCAGT AGTCTATAGT ACCATAATAC TACAGTAGTC TGG
G
T
G
T
T
T
C
100 |
REPEAT
T
C
A
A
G
T
T
T
A
G
A
T
G
G
G
G
A
G
A
G
T
A
A
G
T
T
A
G
G
G
G
G
G
G
A
A
A
T
G
A
T
T
A
A
A
A
A
C
A
C
150
A
G
A
T
G
C
C
T
G
G
G
A
C
A
C
A
C
T
C
C
A
A
A
C
C
T
A
T
A
A
A
A
T
C
A
G
A
A
G
T
G
A
T
G
G
G
G
A
A
G
200
A
G
G
C
C
C
A
G
G
G
T
T
A
T
T
C
G
C
T
T
C
T
G
A
C
A
A
G
C
A
G
C
C
A
A
A
G
T
C
A
T
T
C
T
G
C
T
G
T
A
250
T
A
C
C
A
A
C
T
G
T
G
A
G
T
G
C
C
A
C
C AGCC
T
AGG
G
T TTTTACATCC CATTTCCCCC
300 |
var(275):[C:0.11]
|
var(279):[T:0.02]
TTTATTCTCA GAGATGTATA GTTTGTGACT TTTATATTTT AATGCTCTTG
350
TGTCCTTTAT TGCAAGCTAT ATT
T
TTTTTA GCTATTTACA ATTAAGATTA
400 |
var(374):[A:0.03]
ACAAGCAATT TCTAAGTATT CTACTTCTGA ACTATACATT TGAAATAATA
450
CTTGTGACTG TATTTTAGGT TCTGTAGCAC TTTTCCAAAA ATGACATA
C
A
500 |
var(499):[T:0.05]
TTTTCAAACA GATGGCTTTA TTCATGCTTA CCAAGTCCCT CTGAGGTACA
550
CTGGAAGAAG AAACTTTATT CCCTTCAAAA ATAAAGGCTC AAGTCCAAGT
600
CAAACTGAGT A
C
TTATTAAA CACCTTTAAT GTTCAAGACC CAGGGAGGTA
650 |
var(612):[T:0.11]
CTTCTCTGAA TATGGAAAGG TTAGTGTACC ACTTAAACAC AGTACACTGA
700
TTTACCATCT CTTGTTTGTA CAGAATTAAA TAGTCTAGAC AATTTAATTA
750
TTTTAATTGA TCAGTGTAAG TTGTTGTGAA CAATTCAGAA TAAAAGCTCC
800
AAGTACAAGT ACTTTCTTTC CACATTATTC TTCTCATCTT C
A
G
T
T
C
A
C
A
T
850 |
NOT SCANNED
A
T
G
A
A
A
A
C
T
A
A
A
G
C
C
T
C
C
T
A
A
A
C
T
T
A
A
G
A
T
T
A
T
A
A
A
G
T
A
C
T
G
C
A
A
A
G
T
A
C
900
A
G
T
A
G
T
C
A
C
T
A
A
C
G
T
G
A
A
A
A
A
A
A
A
A
A
C
T
A
C
T
A
C
T
T
T
C
C
A
T
G
G
C
T
G
T
C
T
A
T
950
A
G
C
T
C
A
A
C
T
C
T
C
T
G
A
A
A
A
A
T
A
T
A
C
A
G
T
C
G
G
T
T
T
G
A
A
G
T
C
T
T
T
T
G
T
G
A
A
A
T
1000
C
C
C
T
T
G
T
G
A
G
A
C
T
C
T
A
C
T
G
T
T
G
A
C
T
G
T
G
G
T
T
A
G
A
A
T
A
C
A
T
T
C
A
A
A
A
G
T
A
T
1050
A
A
T
C
A
G
A
T
T
G
C
A
T
C
A
T
C
A
C
C
A
T
C
A
C
C
T
G
C
T
C
A
G
A
G
G
C
A
A
G
T
T
G
A
A
G
A
A
A
C
1100
A
T
G
T
G
C
T
C
A
T
G
A
G
G
C
T
G
A
A
G
C
T
G
G
C
T
T
A
T
T
G
T
A
C
T
A
C
A
C
T
C
T
C
A
T
G
T
G
G
G
1150
C
T
T
G
C
C
A
G
A
G
A
G
A
T
T
A
G
T
C
A
C
C
A
T
T
T
T
G
C
A
G
C
T
G
G
T
T
T
C
A
A
A
T
T
C
A
G
T
T
G
1200
C
T
G
C
G
A
T
A
C
A
A
G
T
G
C
A
G
A
T
G
C
A
A
T
G
G
C
T
T
A
C
C
C
T
A
A
T
T
A
T
A
T
T
G
C
T
C
C
A
G
1250
T
T
T
A
A
T
C
T
T
T
C
C
A
T
T
T
G
T
A
G
C
A
T
A
C
T
A
T
A
T
A
C
T
G
G
A
T
C
A
A
A
T
T
C
A
A
G
A
C
T
1300
C
T
G
G
A
T
T
G
G
T
T
T
C
A
A
A
T
A
G
A
A
G
A
G
A
T
T
T
C
A
A
A
A
T
C
A
C
A
C
A
T
T
T
G
T
T
A
T
C
C
1350
T
C
T
C
C
T
A
A
A
G
C
T
T
G
C
T
G
A
T
C
A
T
A
T
T
T
C
A
T
C
A
T
T
G
T
A
T
C
T
G
C
T
A
G
A
T
C
T
T
C
1400
T
G
A
A
T
T
C
A
C
C
C
T
A
A
A
G
G
T
G
T
T
T
T
T
A
G
C
T
C
T
C
T
A
A
A
C
C
A
T
C
A
C
T
A
A
A
T
C
T
T
1450
G
A
T
A
A
T
T
A
A
T
A
A
A
A
A
T
G
C
A
G
A
A
A
A
A
A
A
C
A
G
T
T
C
T
T
A
A
A
G
C
T
T
T
T
T
T
T
A
A
C
1500
A
C
A
A
T
A
A
A
A
G
G
A
A
A
G
T
T
A
T
G
T
C
A
T
C
T
C
C
A
A
A
A
A
T
A
C
T
C
A
T
A
T
G
T
T
T
T
T
T
A
1550
A
A
A
T
T
T
C
A
A
T
T
T
T
C
T
T
C
C
T
C
T
T
T
G
G
A
A
T
T
A
A
A
T
A
T
A
T
G
A
G
C
A
A
A
T
T
C
T
A
A
1600
G
G
A
A
A
T
T
A
A
T
T
G
T
A
A
T
C
A
G
T
G
G
T
T
T
C
T
A
A
A
C
T
T
A
A
C
T
G
A
T
G
G
T
C
A
A
A
A
T
C
1650 |
REPEAT
|
var(1641):[C:0.09]
A
C
T
T
G
G
G
A
A
G
C
T
T
T
A
A
A
A
C
A
C
A
C
A
T
ACATT TCCCCCACTT CACCCTGTAC
1700 |
var(1656):[A:0.01]
CTGTTGAGTC ATAATTTAAA GAGGTTTCTT TTTAAATTAA TCTAGAAGTT
1750
AAATAAAGCT AATGCTGGTA TT
G
CTTCTGA GAGTCAGAAA GAAAAAAGAA
1800 |
var(1773):[T:0.01]
AGGTTCCTGC CTATCTCATG CAGGTCTTTT TAACTGCCTG CTACTGTCCA
1850
TATTTAATAA ATGCCATCTG TCAAGAATGA TGTCTATACA AAGAGATGAT
1900
GTAATCAGAA GAA
C
TTTAAA ATAAAAGAAA AAATAAAATC CTAGCATCAT
1950 |
var(1914):[A:0.01]
CAGATCCACA G
A
A
G
C
T
A
C
T
C
A
G
A
T
A
A
G
A
G
G
C
T
C
C
A
A
G
A
G
G
A
C
A
T
T
T
T
T
G
G
2000 | Exon 1 |
UTR
A
T
G
T
G
A
A
A
A
A
C
A
A
T
G
A
G
A
A
G
G
A
G
G
A
C
A
A
C
A
C
A
C
A
T
T
T
A
C
A
A
T
C
G
T
C
T
T
A
A
2050
T
T
T
T
GTAAGT ATCTGTTTGA ATTTGTTGGA TACATAGTTT TTTCCTTCAA
2100
AATAACTTAA AGGTATTATT TTGAAGACAC ACATAGTCAA GTTTAGATTA
2150
TGCATTTTTA CTCCGTTCTT ATTCATTTGT T
C
C
A
T
G
C
T
A
G
T
G
C
T
G
G
G
A
A
T
2200 |
REPEAT
A
T
G
G
T
G
G
T
A
A
G
A
A
C
A
G
A
C
A
A
C
C
C
A
T
G
C
C
C
T
C
A
C
T
A
T
G
C
A
T
A
C
A
G
T
ATCAT
2250
CGATGGCATT ATAAAAATAT CAAAATAGTT TTATGGTTAA AATAAACTAT
2300
AAGAAATTCA CATAAGTATA TTTCAAAATA CCCTTGGGGA TAAAAATAAC
2350
A
C
ATTCAAGT TACAGCTGAC ACATTATTTG GAAAAATCAC TCAAGTTCTG
2400 |
var(2352):[A:0.12]
CAATTTCTTC TTCCCAAATT AATACCAGTT TTACTTTCTT ATCTGATCTA
2450
AAATTTATAA CTTATTATAC AACAATGTGA AGTTAATAAG TGAATGGTAT
2500
ATCACAGGTT ATTCAACACA CTGCTAAAAT TAAAAATCAT TGTGTCAATT
2550
CTAAAAACTA GATTTCCCTA AACTCTAAAA GCTACACAAC TATGACAAAC
2600
AGAATCTACA GCACTCTGTG ACTCTTAATA TTACAATTAA ACATCAAGTT
2650
TATTAATAGA AAAGTTTGGT AAACAGATTT TCACATGACA TAATGTGTCA
2700
ATTTGATAAT TATGGCCAAT CATAAACTTA AGCATAAA
A
G GTGATGGTAA
2750 |
var(2739):[G:0.01]
GATAAAAACA AAATCTTGAG GACAAAATTT CAAACTCATG CTCTCATCCA
2800
GGCCAGAGTT CCTGAACTAT ACAATGACAA ACTAACTTCT TTGTTAAACT
2850
GCATTTTACT CTTTACAAAT ACAAGTAGTT TTCCAAATAC TCCATGCTGT
2900
TGATGCCCCA AAGTGGGAAA AACAGATGAA TTAAATAAAT AGAGGCCATG
2950
TTAGCCAATG TGATTGAGAC CATTTCTTCA TTTAATAAAA AAATCA
G
T
T
A
3000 |
var(2997):[:0.01]
AAGTG
G
GAAA TCATAAAAAA TACATGCATA CCTTAAACAT TTTACTTCAA
3050 |
var(3006):[C:0.01]
AACAATAAAT CATATTCATT TAATAAAGTA A
A
T
A
C
T
T
C
T
G
A
A
G
T
A
G
C
A
G
A
3100 |
NOT SCANNED
|
REPEAT
G
T
T
G
T
C
T
G
A
G
G
T
A
A
A
T
A
C
C
T
G
A
G
G
T
T
A
T
C
G
T
C
T
C
A
C
G
C
C
A
A
A
G
A
A
A
C
T
G
A
3150
A
G
G
A
C
G
A
G
G
A
C
A
C
A
C
A
A
G
G
A
G
T
G
A
G
T
T
T
A
A
G
A
G
T
G
G
A
G
T
T
T
T
A
A
T
A
G
A
T
G
3200
A
A
A
G
A
A
A
C
A
G
G
A
G
G
C
T
G
G
G
C
G
A
G
G
T
G
G
C
T
T
A
T
G
C
C
T
G
T
A
A
T
T
C
C
A
G
C
A
C
T
3250 |
REPEAT
T
T
G
G
G
A
T
G
C
T
G
A
G
G
C
A
G
G
C
G
G
A
T
C
A
C
T
T
G
G
G
G
T
C
A
G
G
A
G
T
T
C
G
A
G
A
C
C
A
G
3300
C
C
A
G
G
C
C
A
A
C
G
T
G
G
T
G
A
A
A
C
C
C
A
G
T
C
T
C
T
A
C
C
A
A
A
A
A
T
A
C
G
A
A
A
A
T
T
A
G
C
3350
T
G
G
G
C
G
T
G
G
T
G
G
C
G
C
A
T
A
C
C
G
G
T
A
G
T
C
C
C
A
G
C
T
A
C
G
C
G
G
G
A
G
G
C
A
G
A
G
G
T
3400
G
A
G
A
G
A
A
T
C
G
C
T
T
G
A
A
C
C
C
G
G
G
A
G
A
C
G
G
A
G
G
T
T
G
C
A
G
T
G
A
G
C
C
A
A
G
A
T
C
A
3450
T
G
C
C
A
T
T
G
C
A
C
T
C
C
A
G
C
C
T
G
G
G
C
A
A
C
A
G
A
C
C
A
A
G
A
C
T
C
C
G
T
C
T
C
A
A
A
A
A
A
3500
A
A
A
A
A
A
A
A
G
A
A
A
A
A
A
A
G
A
A
A
G
A
A
A
G
A
A
A
A
A
G
G
A
A
A
A
A
G
A
A
A
G
A
G
G
A
A
A
G
C
3550 |
REPEAT
T
C
C
C
T
C
G
T
G
C
A
G
A
G
G
A
A
G
G
G
G
T
C
C
C
G
A
A
C
G
G
G
T
T
T
C
C
G
G
G
T
T
C
A
G
G
G
C
A
A
3600
G
A
A
G
A
G
G
T
T
G
G
T
T
T
T
A
T
A
G
G
A
G
G
C
G
G
T
G
T
C
T
G
A
T
T
T
A
C
A
T
A
G
G
G
C
A
C
G
A
G
3650
A
G
A
T
T
G
A
T
C
A
G
A
C
C
A
G
G
T
G
T
G
C
C
A
T
T
T
A
C
A
T
A
G
C
A
T
G
C
T
C
C
G
C
C
T
C
C
C
A
G
3700 |
REPEAT
G
T
T
C
A
C
G
C
C
A
T
T
C
T
C
C
T
G
C
C
T
C
A
G
G
C
T
C
C
C
G
A
G
T
A
G
C
T
G
G
G
A
T
T
A
T
G
G
G
C
3750
G
C
C
C
G
C
C
A
C
C
A
T
G
C
C
C
G
C
C
T
A
A
T
T
T
T
T
T
T
G
T
G
C
T
T
T
T
A
G
T
A
G
A
G
A
C
G
G
G
G
3800
T
T
T
C
A
C
C
G
T
G
T
T
A
G
C
C
A
G
G
A
T
G
G
T
C
T
C
G
A
T
C
T
C
C
T
G
A
C
C
T
C
G
T
G
A
T
C
C
G
C
3850
C
T
G
C
C
T
C
G
G
C
C
T
C
C
C
A
A
A
G
T
G
C
T
G
G
G
A
T
G
A
C
A
G
G
C
G
T
G
A
G
C
C
A
C
C
G
C
G
C
C
3900
G
G
C
C
G
C
G
C
C
G
G
C
C
T
C
C
A
C
C
C
T
A
A
T
C
T
T
T
T
A
C
T
A
G
G
C
A
G
A
T
G
G
G
T
T
T
G
C
T
A
3950 |
REPEAT
C
C
T
G
G
C
C
A
G
C
A
C
C
A
T
G
T
T
G
C
C
T
G
C
C
T
C
T
T
T
A
C
T
G
T
G
C
A
C
G
T
G
G
T
G
A
C
A
A
A
4000
G
A
A
A
A
G
G
G
A
A
G
G
T
G
G
A
G
C
C
T
C
C
A
T
G
T
T
G
A
A
C
A
T
A
C
C
T
G
G
C
T
T
C
C
A
A
G
T
G
G
4050
C
C
C
T
T
T
A
C
T
A
T
T
G
G
C
A
C
A
G
C
T
A
C
C
A
G
C
A
T
T
C
A
C
C
T
G
T
G
C
A
A
G
C
T
T
C
C
A
G
C
4100 |
var(4097):[A:0.08]
T
T
G
C
T
T
A
T
C
T
A
T
G
T
C
T
G
C
A
G
C
T
C
G
A
T
C
T
T
T
C
A
G
G
C
T
G
C
T
C
T
T
T
T
G
T
T
A
G
A
4150
A
A
A
G
A
A
A
T
G
A
T
T
T
G
G
G
G
G
C
T
G
C
T
T
T
T
T
A
T
T
T
A
A
A
A
G
G
A
A
A
C
C
T
T
G
C
C
A
A
G
4200
G
A
C
T
C
T
C
T
T
A
G
C
C
T
C
A
C
T
A
A
C
T
G
C
C
T
A
A
A
T
T
T
C
T
T
T
C
G
A
G
C
T
C
C
T
G
T
A
T
C
4250
A
CTTTGAAGT TATAAGAATA AATACAATTT TTCTTGGCAT TGTTCCTTCC
4300
CATGTTGTAA TAATATCGAA TCCTGATTCA
A
GCTGTTATT CAATACAACA
4350 |
var(4331):[G:0.07]
TAGAACTATT TCTAGGGCAT CTAAAACTAC CTATGGCATG AGTAATTTTT
4400
GC
A
GCTGGAT TGCTCTTATC TCCTCCTCCT CTTCATATTT AGATCCATCC
4450 |
var(4403):[G:0.30]
TTTTCTGCCA CAGCTTGTTT GCTTTCTGCA TCCATAATTT CATTTTCAAA
4500
AAAAATTTTA ACTGTAGCCA TATGCCTGAC ATATATTAGT TTCTAATTTA
4550
AAAAA
A
TTAT TCGATTTGTC TGAGATACTT AAAAACAAAT ATACAACAGC
4600 |
var(4556):[:0.95]
AACAAACTA
T
GTTTTATACT ATCTCCTTGT AATTAAGGAT TTTTTAAGTG
4650 |
var(4610):[C:0.05]
ATAGTTTTCA CCAAAGTTTA GTAAATGGTT AAAATGTAAA TTTTGCTCTA
4700
TGCTATCAC
G
ATACTA
T
TTT TTAAATGTTT GATGCTATTC TATTTTATAT
4750 |
var(4710):[T:0.07]
|
var(4717):[C:0.08]
GACTGCTACT ACTGTCTTAT ACTTCTTTTC CCAAATTAAA ACTCAAAACT
4800
CTTTCTTACA TCTTTTACAT CTCTTTACAT ACTCTGATTC ATGGATTACA
4850
GGAAGGATAT TACATTCAAT GGTAAAACTA TGACTTTTAG GTCATTTTTT
4900
TCTGGAAATT TGTGGATCTT TATTTTCATT TTTAAAAATA ATTGCTATTG
4950
AAAAACTTTA TCCTCATTTG A
A
T
G
A
A
A
A
C
A
G
A
G
C
T
C
T
T
C
T
T
T
G
T
A
T
T
G
T
T
5000 |
REPEAT
C
A
T
A
A
T
G
G
C
A
T
A
C
C
C
A
A
C
A
C
C
C
A
G
C
A
C
A
G
C
A
C
C
T
A
G
C
A
C
A
C
A
G
A
A
A
T
A
T
T
5050
C
A
G
A
T
A
T
T
G
T
C
G
G
A
A
T
G
C
A
T
G
A
A
T
GTTTAT ATAATTTCAT GGAAGCATTA
5100
ATTATTGAAA TAAGAGTGCA CTTCCCTAAG TTACTTATCA GGGAACTAGC
5150
TTTGG
T
TATC AGTAGCTTTG AGTTTCAGAT TTGGGAAAAA ATTCATTAAA
5200 |
var(5156):[G:0.01]
TTAGCTATTC TAACAGCTAG CTATAAGGTC TA
T
GGTCAAC TC
A
G
TTCTGC
5250 |
var(5233):[C:0.01]
|
var(5243):[:0.93]
T
A
C
T
A
C
T
A
T
T
C
A
C
C
A
A
G
A
T
C
A
T
T
G
A
T
G
A
A
A
C
T
G
T
A
T
T
C
A
T
A
A
A
T
C
T
G
G
T
G
5300 |
REPEAT
A
A
A
A
C
T
T
T
T
C
A
G
T
T
C
T
T
A
T
C
C
T
A
C
T
T
G
TAG TTCACTTTGT CTCAG
G
T
A
C
T
5350 | Exon 2 |
UTR
C
A
G
A
A
A
A
A
G
G
A
T
G
T
G
A
A
G
A
C
A
A
T
G
C
A
C
A
G
G
G
A
A
T
A
C
A
A
T
A
G
T
T
T
C
A
G
GTA
5400
AGTTTATTTT CTTTAACTGT TTCTATGCTG AAGGTGCATA TTAATGGTGA
5450
GATATTCT
A
T AATTCAGAGT TCATCTCGTA AAACACTAAA AAAAAGTATT
5500 |
var(5459):[G:0.01]
TTTTTTAAGT TCTAAGATTT GTGGATTTGC CTACAACAAA AAA
C
T
G
C
A
G
T
5550 |
NOT SCANNED
T
G
G
T
T
A
G
T
T
C
T
A
G
T
T
T
C
A
T
T
G
C
T
G
C
C
T
A
T
G
G
C
A
A
C
T
G
T
A
A
T
T
C
C
T
C
T
G
T
A
5600
G
T
T
T
T
T
T
G
T
T
G
T
T
G
T
T
G
T
T
G
T
T
G
T
T
G
T
T
T
A
A
T
T
C
T
A
G
T
G
C
C
C
C
T
G
T
T
C
T
G
5650
C
T
T
A
G
T
T
C
A
A
C
C
A
C
A
T
G
G
T
A
C
A
A
C
A
G
G
T
C
T
G
C
A
A
G
T
G
T
T
A
C
T
A
T
C
A
A
C
T
A
5700
A
AAAAAAAAA AAAAAAAAGA AAAATTTTTG AACAACCAGT TCATGAGGAA
5750
ATAAAAAAAT T
A
CTCTACAC AAGTGCCCAA CACCCTAAAT CCTGACTTTC
5800 |
var(5762):[T:0.04]
TCCCAGCTTC CAACCTGTTA CTTGCTTTAA CCTTCCCCCA GGAAGGTTTT
5850
CAGCTGAGGC CTTTATTTGC AGTTAGGGAC ACCTGATGGA GTTCTAAGTC
5900
TTTCTTATGT AAGTCCAACA TATAATACAT TGTACACAAC CTCCAACTGT
5950
TTTAAAGCAA ATGAGAATTT AAAGATATTT ACAAATCAAT CTACCACTGA
6000
TTCCTAGATC CTAAGTCATC TCACCCACAC CTAAATTGAC AGCTCCTTTT
6050
TTATTTTAGC AATTAAACTA TATAGATTAT TTCTAAAGCA TTTAACAAAG
6100
TTTCGTAGCT
A
TAAGTACTC CCTCTTTATT CATGTTTAAG TACAACCTCT
6150 |
var(6111):[G:0.24]
TAATTCATAT TTTAATTAAA TCATGCAATT ATAATAAACA AGTACATACA
6200
TTTAGGAGCA AACAGCTTGA CACTTCAGCA GCACTCTGCT GGAGCAGCCA
6250
AAGAAAGTCT GCTCATCAGA GAATAAACTA GATGCTGTCA ACATCCAAGG
6300
ATTTATAGAA AAGTTGGAAA TGCTGGTCAA TATGCAAAGT CATATAAGTG
6350
GAGGTCAGTT AAGACTGATA TGCTTTTCT
T
TGAGAAAA
G
G
C
C
A
T
G
A
A
T
C
A
6400 |
var(6380):[C:0.01]
|
REPEAT
A
G
T
C
T
C
A
A
C
A
C
A
T
T
T
C
A
G
G
A
A
T
T
T
C
T
A
T
C
A
T
T
T
G
T
A
C
C
A
C
C
C
T
C
T
C
T
G
A
C
6450
C
A
C
A
G
G
A
C
A
T
T
A
A
A
T
T
A
A
A
A
A
T
C
T
T
C
A
T
C
A
A
A
A
A
G
A
T
A
A
C
A
C
A
C
A
A
A
A
A
A
6500 |
var(6478):[C:0.05]
|
var(6479):[T:0.05]
A
C
T
C
A
A
T
T
T
T
T
G
G
A
A
A
T
C
T
T
A
A
A
A
C
A
T
T
T
A
A
A
A
A
T
A
A
C
T
C
A
A
C
A
A
A
G
A
A
G
6550
T
A
T
T
G
A
C
G
A
T
G
A
A
A
A
ACGTG TGGGG
C
A
G
G
T
G
T
G
G
T
G
G
C
A
C
A
T
G
C
C
T
G
T
A
G
6600 |
REPEAT
T
C
C
C
A
G
C
T
A
C
T
C
A
G
G
A
G
G
C
C
A
A
G
G
C
A
G
G
A
A
G
A
T
C
A
C
T
T
G
A
G
A
C
T
A
G
G
A
G
G
6650
T
C
G
A
G
G
C
T
G
C
A
G
T
G
A
G
C
T
G
T
C
T
G
T
G
G
T
C
A
C
A
C
C
A
C
T
G
C
A
C
T
C
C
A
G
C
C
T
G
G
6700
G
T
G
A
C
A
G
A
G
T
G
A
G
A
C
C
C
T
G
C
C
T
C
T
A
G
A
A
A
A
A
A
TTTTTTTA ATTTTTTGAA
6750
AAGAGAAAAA TGTGCAAAAT GACAAA
C
G
A
A
T
G
G
A
A
A
T
A
A
T
A
C
A
A
A
T
T
A
A
A
6800 |
var(6777):[T:0.01]
|
var(6778):[A:0.02]
|
REPEAT
A
T
T
T
G
G
A
A
G
C
T
G
C
T
C
A
A
T
A
G
C
A
T
T
T
A
A
A
G
G
G
A
A
A
T
A
C
A
G
G
G
C
A
T
T
A
T
T
A
A
6850
T
G
A
A
C
A
T
A
T
T
A
G
A
A
T
T
T
T
T
A
A
A
A
G
C
T
T
A
A
A
A
A
T
G
A
T
G
A
T
C
C
A
A
G
G
A
C
A
A
A
6900
C
A
A
C
C
A
A
C
T
T
A
A
A
A
A
G
T
C
A
A
A
A
T
G
A
A
A
C
T
A
A
C
A
A
A
A
T
A
A
A
C
T
C
C
A
A
A
G
A
A
6950 |
var(6940):[:0.03]
A
A
T
G
A
A
A
A
A
G
G
A
A
A
T
A
A
T
T
A
A
G
G
T
A
A
G
A
G
C
A
A
G
A
A
A
T
G
A
T
G
A
A
A
C
A
G
A
A
A
7000 |
NOT SCANNED
A
T
A
A
A
A
T
G
C
A
A
A
A
G
A
G
G
A
A
C
A
A
T
A
C
A
T
C
C
T
A
A
A
A
C
T
G
G
T
C
T
T
T
T
G
A
A
A
A
C
7050
A
C
T
A
A
G
A
A
A
A
T
A
A
A
T
A
G
T
A
A
A
G
C
A
A
T
A
A
A
T
A
A
A
C
A
A
T
A
T
T
G
C
C
A
T
G
G
G
G
G
7100
G
G
A
G
G
A
G
C
A
G
A
A
C
A
T
A
A
T
G
A
A
A
A
T
C
C
C
A
G
A
G
A
T
T
A
A
A
A
A
A
T
G
G
T
A
A
G
A
A
G
7150
A
T
A
T
C
A
T
T
T
A
A
A
A
A
A
A
A
A
A
A
A
A
A
C
T
C
T
G
T
C
T
A
T
A
A
A
C
T
T
A
G
A
T
T
T
G
T
T
T
G
7200
T
T
T
G
T
T
T
G
T
T
T
T
T
G
T
T
T
T
G
T
T
T
T
G
T
T
T
T
G
A
G
A
T
G
G
A
G
T
C
T
C
A
C
T
C
T
G
T
C
A
7250 |
REPEAT
C
C
C
A
G
G
C
T
G
G
A
G
T
G
C
A
G
T
G
G
C
G
C
A
A
T
C
T
C
A
G
C
T
C
A
C
C
A
C
A
A
C
C
T
C
C
G
C
C
T
7300
C
C
T
G
G
G
T
T
C
A
A
G
T
G
A
T
T
C
T
C
C
T
G
C
C
T
C
A
G
C
C
T
C
C
T
G
A
G
T
A
G
C
T
G
G
G
A
C
T
A
7350
C
A
G
G
T
G
C
A
C
G
C
C
A
C
C
A
T
G
C
C
C
A
G
C
T
A
A
T
T
T
T
T
T
T
T
T
T
T
T
G
T
A
T
T
T
T
T
A
G
T
7400
A
G
A
A
A
C
A
G
G
G
T
T
T
C
A
C
C
A
T
G
T
T
G
G
T
C
A
G
G
C
T
G
G
T
C
T
C
A
A
T
C
T
C
C
T
G
A
C
C
T
7450
T
G
T
G
A
T
C
T
G
C
C
T
G
C
C
T
T
A
G
C
C
T
C
C
C
A
A
T
G
T
G
C
T
G
G
G
A
T
T
A
T
A
G
G
T
G
T
G
A
G
7500
C
C
A
C
C
G
C
G
C
G
C
G
G
C
C
C
T
A
G
A
A
T
A
T
T
T
T
T
T
G
A
A
T
G
A
G
C
A
A
T
C
A
C
C
T
A
G
A
A
A
7550
A
A
T
A
T
C
T
T
A
C
C
A
A
A
T
T
G
A
C
A
C
A
A
T
A
G
G
C
T
A
G
T
C
T
G
C
A
A
T
T
A
T
C
A
A
C
A
A
A
T
7600
T
C
A
T
T
C
G
G
T
A
C
A
T
A
A
A
A
G
C
T
A
C
C
C
A
C
T
A
A
A
G
A
A
A
C
A
C
G
A
G
G
C
C
A
A
G
A
T
A
A
7650
T
T
T
T
T
A
C
A
G
G
T
G
A
A
T
T
C
T
A
T
T
A
A
A
A
T
C
A
A
A
T
C
T
T
A
T
A
C
C
A
A
T
T
C
T
A
A
C
A
A
7700
C
A
C
T
C
T
A
T
G
C
C
T
A
T
T
A
T
G
T
T
T
C
T
A
C
A
A
T
A
A
G
C
C
T
T
T
A
G
C
C
A
A
C
C
A
G
G
A
G
C
7750
A
A
C
C
C
A
A
A
A
A
A
A
C
A
A
A
A
T
G
T
A
T
T
G
T
A
T
G
T
A
G
T
A
G
T
T
C
A
C
A
A
T
T
G
C
A
A
A
C
A
7800 |
REPEAT
T
T
A
T
A
A
G
C
A
T
T
C
T
T
T
T
T
A
C
A
A
T
C
A
A
A
A
G
T
G
G
G
G
A
A
A
A
G
A
T
G
T
T
T
T
C
T
T
T
G
7850
A
C
A
C
T
T
C
T
C
T
T
C
A
A
C
A
T
A
C
T
A
G
A
G
G
T
C
C
T
A
G
A
C
C
A
T
G
C
A
G
T
A
A
G
A
C
C
A
A
A
7900
A
G
A
T
A
A
A
A
T
G
A
A
A
C
C
A
C
A
A
G
G
A
T
T
T
G
A
A
T
G
A
A
A
C
A
A
A
A
C
T
C
A
C
T
A
T
T
C
A
C
7950
A
G
A
G
G
T
T
A
T
A
A
T
T
A
C
G
T
A
C
T
T
A
G
A
A
A
A
T
T
C
A
A
A
A
G
A
A
T
C
T
A
A
A
G
A
T
G
A
A
T
8000
T
A
T
G
G
G
A
A
G
T
A
A
A
T
A
T
T
T
T
A
T
C
A
A
G
A
T
G
G
T
T
G
C
T
A
C
A
A
G
T
A
T
C
A
G
C
T
A
C
A
8050
T
G
T
T
T
C
T
A
T
G
C
T
G
G
C
A
A
C
A
A
A
C
A
G
A
A
A
A
T
A
C
A
A
C
T
T
T
A
A
A
A
A
T
A
T
T
T
A
C
T
8100
A
T
A
A
T
A
A
T
A
A
A
A
C
A
A
A
A
A
A
G
C
A
C
T
C
T
A
A
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A
A
T
A
A
A
T
C
T
G
A
C
A
A
A
A
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C
A
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A
8150
A
A
T
G
T
G
A
T
T
T
T
T
A
T
G
A
A
A
A
A
T
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C
A
T
G
G
C
A
A
T
T
T
T
A
C
A
A
A
A
A
T
G
T
A
T
T
A
A
G
8200
G
A
A
A
C
C
T
A
A
G
C
A
A
A
T
G
G
A
C
A
G
A
A
A
T
A
T
A
T
T
T
C
T
G
A
A
G
A
A
G
A
C
T
A
A
A
T
A
T
T
8250
G
T
A
A
A
T
A
T
A
G
C
A
A
T
T
C
T
C
C
C
C
T
A
A
A
T
T
A
A
T
C
T
A
T
A
T
G
T
T
C
A
A
T
A
A
A
A
T
T
T
8300
C
A
A
C
A
A
A
A
A
T
C
A
C
A
T
C
A
G
A
G
T
G
G
G
T
A
G
G
T
T
T
G
A
G
T
G
A
T
T
A
T
C
C
A
T
C
T
G
T
T
8350
A
T
T
C
A
T
T
T
T
T
T
A
T
T
T
A
T
T
T
G
G
C
A
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A
A
G
A
T
C
A
A
C
T
G
A
T
G
C
T
T
C
A
T
T
A
T
A
T
A
8400
G
A
A
A
A
G
C
A
G
A
G
A
A
C
A
A
A
G
G
A
A
G
G
T
T
G
A
G
A
T
G
G
T
T
T
T
A
A
A
G
G
A
T
G
G
T
A
A
T
A
8450
T
A
A
T
G
A
G
C
T
T
T
A
T
G
A
C
A
T
T
G
G
C
T
A
A
G
A
G
A
G
A
G
A
A
A
A
A
T
A
G
C
C
T
C
A
T
A
A
A
G
8500
T
A
G
G
A
G
A
A
C
C
A
A
A
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A
T
A
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A
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A
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A
T
G
T
A
A
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A
G
T
A
A
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C
T
T
G
G
A
A
G
A
T
A
C
G
T
8550
G
A
A
G
A
A
A
A
G
A
A
G
A
T
G
A
A
T
T
A
A
T
C
C
A
A
A
A
T
A
G
T
A
C
T
A
A
G
A
A
A
A
T
A
G
G
T
T
A
T
8600
C
C
C
T
A
C
A
A
A
A
A
A
A
A
A
T
T
A
A
A
A
T
C
G
G
A
T
C
G
C
T
A
T
A
C
C
A
C
A
C
T
A
T
A
A
C
C
A
A
A
8650
G
T
T
A
A
C
C
A
T
A
G
A
G
C
T
A
T
A
A
G
A
A
G
A
T
G
C
T
A
T
A
G
G
A
A
G
A
T
G
A
C
T
T
T
C
T
G
A
T
C
8700
T
C
C
A
A
G
A
A
G
G
G
A
C
T
T
T
T
T
A
A
A
T
C
A
G
A
C
T
G
A
A
A
T
A
T
G
A
A
A
G
T
T
A
A
G
G
A
A
A
A
8750
G
T
T
T
T
A
T
A
T
A
T
T
T
T
A
A
A
A
C
T
G
T
C
A
C
A
T
C
A
A
A
A
T
G
T
C
T
C
T
T
C
A
T
T
A
A
C
A
G
A
8800
T
A
A
A
A
A
G
A
A
A
A
A
C
A
T
A
A
G
T
C
A
T
T
A
A
A
A
T
G
C
A
A
C
A
A
A
A
T
T
T
G
T
A
A
C
T
A
G
A
T
8850
C
C
C
C
T
T
A
G
A
A
T
C
A
A
C
T
T
T
T
T
A
A
A
T
G
A
C
A
G
A
C
A
A
T
A
C
A
G
C
A
G
G
G
A
A
A
A
G
A
G
8900 |
REPEAT
A
T
C
A
A
T
A
G
T
G
A
T
T
T
T
A
C
T
G
A
G
C
A
A
A
A
A
A
A
C
C
A
C
A
T
A
T
G
A
C
T
A
T
T
A
A
A
C
A
T
8950
A
A
A
T
A
A
A
A
A
T
G
T
C
C
A
A
T
T
C
C
A
T
T
A
T
A
A
A
C
A
A
G
A
A
A
A
T
G
T
A
A
A
T
T
A
A
A
A
A
C
9000
A
C
A
A
G
A
T
A
C
C
A
T
T
T
T
C
T
A
A
C
C
A
A
C
A
G
A
C
T
G
A
T
A
A
A
A
A
T
T
T
A
A
G
T
C
T
C
A
C
A
9050
G
T
A
T
T
A
C
A
T
G
T
T
A
A
A
A
A
G
G
A
T
A
G
A
G
T
A
T
A
A
T
A
T
C
C
T
T
G
A
A
G
T
A
C
A
A
T
A
T
C
9100
C
T
T
A
A
A
A
A
G
G
A
T
A
G
A
G
T
A
T
A
A
T
A
T
G
A
A
A
A
G
G
A
T
A
G
A
A
T
T
T
T
C
A
T
A
T
A
C
C
A
9150
C
T
T
G
G
G
A
A
A
A
A
A
A
T
T
T
G
C
C
A
T
G
A
T
T
T
A
C
T
A
A
A
G
T
T
A
A
C
A
T
G
T
G
C
A
T
A
G
C
C
9200
T
G
T
A
A
T
T
C
C
T
C
C
C
G
G
A
A
A
T
A
A
A
A
T
C
T
A
G
A
G
G
A
A
A
G
C
T
C
A
C
A
T
A
T
G
T
G
C
A
C
9250
C
A
G
G
A
G
A
C
A
T
G
T
A
C
A
A
G
G
A
T
G
T
T
T
G
T
A
A
C
A
G
C
A
T
C
A
T
G
T
T
G
T
C
T
T
T
T
A
A
T
9300 |
REPEAT
T
G
A
A
C
T
T
T
T
T
C
A
G
A
T
A
A
T
T
C
T
A
G
A
T
T
C
A
C
A
G
G
C
A
G
A
T
T
G
G
A
G
A
A
A
T
T
A
T
A
9350
T
G
G
A
A
A
T
A
T
C
C
C
A
T
G
T
A
G
C
T
T
C
T
A
C
C
T
G
G
T
T
T
A
C
C
A
C
A
A
T
G
G
C
A
A
C
A
T
C
T
9400
T
G
C
A
A
A
A
C
T
A
T
A
G
T
T
C
A
A
T
A
C
C
A
C
A
A
C
C
A
G
G
A
T
A
T
T
T
C
A
T
T
C
A
C
A
C
A
G
A
C
9450
C
A
G
A
T
A
C
A
G
A
A
C
A
T
C
T
C
C
A
T
A
A
C
C
A
C
C
A
G
A
A
T
C
C
C
C
A
G
T
G
T
T
A
T
C
C
T
T
C
T
9500
A
T
A
G
C
C
A
C
A
C
A
C
A
C
T
T
G
C
C
T
C
T
A
A
C
T
T
T
C
A
C
C
C
C
A
T
C
C
T
T
A
C
C
C
A
C
C
G
G
C
9550
G
A
C
C
A
A
T
G
A
T
T
T
C
T
C
T
A
T
T
T
T
T
T
G
T
G
T
A
C
A
G
T
T
T
G
G
T
C
A
T
T
T
C
A
A
G
A
A
T
G
9600
C
T
A
C
A
T
A
A
A
T
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A
A
G
T
C
A
T
A
C
A
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A
C
G
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T
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C
T
T
T
A
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G
G
A
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G
C
T
C
T
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T
9650
C
A
C
T
C
A
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C
A
T
A
A
T
T
C
T
C
T
G
G
A
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A
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A
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C
A
G
G
T
T
G
T
T
G
T
A
T
A
T
A
T
C
A
A
C
9700
A
G
T
T
T
G
T
T
A
C
T
T
C
T
T
C
T
T
G
C
T
G
A
G
T
A
T
T
A
T
T
C
C
A
T
G
A
T
A
T
A
G
A
T
A
T
A
C
C
A
9750
T
A
G
A
T
T
T
A
A
C
C
A
T
T
C
A
C
C
T
G
T
T
G
A
A
G
G
A
T
A
T
T
T
G
G
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T
G
T
A
T
C
C
A
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T
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9800
G
G
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A
T
T
A
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A
A
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A
A
A
A
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A
A
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A
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A
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C
A
C
A
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A
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A
9850
C
G
T
C
T
T
C
A
A
T
T
T
C
T
C
T
G
G
G
A
T
A
A
A
T
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C
C
C
A
A
A
G
T
G
T
A
A
T
T
G
C
T
G
A
G
T
C
G
T
9900
A
T
A
G
T
A
A
C
T
G
C
A
T
A
T
T
C
A
G
C
T
T
T
T
C
A
G
A
A
A
C
T
G
T
C
T
A
T
T
T
T
C
C
A
G
A
G
T
A
A
9950
T
T
G
T
A
C
C
A
T
T
T
T
A
C
A
T
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C
T
A
T
C
A
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C
A
A
T
A
A
G
T
G
A
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C
A
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A
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T
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T
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C
A
10000
T
C
C
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T
A
C
C
A
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C
A
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T
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G
T
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T
T
A
T
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A
C
T
A
T
T
T
A
T
T
T
T
A
G
C
T
A
T
T
C
T
G
A
T
A
C
10050
A
G
G
T
T
T
G
T
A
G
A
G
A
C
C
T
A
T
C
A
T
T
A
T
G
G
T
T
T
T
A
A
T
T
T
G
C
A
T
T
A
T
G
G
C
T
A
A
T
G
10100
A
C
A
C
T
T
A
T
T
C
A
T
G
T
G
C
T
T
A
T
T
T
G
C
C
A
T
A
T
G
T
A
T
A
T
C
C
T
C
T
T
C
A
G
T
G
A
A
A
T
10150
G
T
C
T
C
T
T
C
A
T
G
T
C
T
T
T
T
G
C
C
C
A
T
T
T
T
C
T
A
A
T
T
T
G
G
T
T
T
T
A
T
G
T
T
T
T
T
T
T
G
10200
T
T
T
T
T
T
G
T
T
T
T
T
T
A
C
T
G
C
T
G
A
G
T
T
T
T
G
C
A
A
G
T
A
C
T
T
A
T
T
C
T
A
G
G
G
A
C
T
A
G
10250
T
C
C
T
T
T
C
A
T
T
T
T
G
G
G
C
A
A
T
T
T
T
T
G
C
A
T
A
A
A
G
T
G
T
G
A
G
A
C
A
C
A
G
A
T
C
A
A
G
G
10300
T
G
T
T
T
T
G
T
T
T
T
T
T
C
T
T
C
T
G
C
C
T
A
C
T
A
A
T
G
T
T
C
A
G
T
A
A
C
A
G
C
A
C
T
G
T
T
T
T
T
10350 |
REPEAT
A
G
G
A
A
A
A
C
A
A
A
A
C
A
A
A
A
C
C
C
C
A
A
A
T
G
T
T
C
A
T
C
A
T
C
A
G
A
A
C
A
G
A
T
A
T
A
T
A
A
10400
A
T
T
G
T
G
G
T
A
T
A
T
T
C
A
T
C
A
A
T
G
G
A
A
T
G
T
C
A
A
A
T
A
A
A
A
A
T
G
A
A
A
G
A
A
C
T
A
A
A
10450
G
A
T
A
C
A
T
A
G
A
G
C
A
A
T
A
T
A
G
A
T
G
A
G
A
C
C
A
G
A
T
A
C
A
T
G
A
T
A
C
T
G
A
G
T
G
A
G
A
G
10500
A
G
G
C
A
A
A
T
T
G
C
T
G
A
A
G
A
A
C
A
T
A
T
T
G
T
A
C
A
T
A
C
A
T
T
G
T
G
A
G
T
G
A
C
T
C
G
A
T
T
10550
T
A
T
A
T
A
T
G
G
T
T
G
T
A
A
A
A
C
A
T
A
C
A
A
A
A
C
T
A
C
A
C
A
T
A
T
G
A
A
A
A
A
T
A
T
G
T
T
A
A
10600
C
A
C
T
A
T
T
T
A
A
A
A
A
G
A
G
A
C
C
C
C
A
A
A
A
A
A
G
C
A
G
A
A
T
T
T
A
A
A
G
A
G
T
G
G
A
A
T
T
T
10650
A
C
C
T
C
T
G
A
G
G
T
G
G
G
A
G
T
A
A
G
G
A
G
A
A
G
A
C
T
T
A
G
A
G
A
A
C
T
T
C
A
A
G
G
T
T
A
A
C
A
10700
A
G
A
A
A
T
T
A
T
A
T
T
T
C
T
T
A
A
A
C
C
A
A
T
T
G
G
T
G
G
G
T
A
C
A
C
A
G
G
T
G
T
T
C
A
T
C
A
C
A
10750
T
T
G
T
C
A
T
T
C
T
G
A
A
T
A
T
G
T
T
C
T
C
A
T
T
A
T
T
T
A
A
A
A
A
A
A
A
A
A
A
C
T
T
T
A
A
A
A
G
G
10800
T
T
A
T
T
T
T
T
C
A
A
A
T
T
G
A
G
A
T
T
T
G
C
A
T
A
A
G
C
A
A
G
A
G
C
T
A
A
G
A
A
T
A
A
T
A
G
C
T
G
10850
G
T
A
A
G
A
T
G
T
C
A
C
T
T
T
A
A
A
G
A
T
C
T
T
A
C
C
C
T
C
A
G
C
A
G
G
T
A
A
A
A
A
A
A
C
A
G
T
T
A
10900
T
T
A
T
A
A
A
T
T
G
T
A
A
T
A
C
A
G
G
A
A
C
A
T
A
C
C
A
A
A
C
A
G
A
C
C
C
T
T
G
T
T
A
G
G
G
A
A
A
G
10950
A
T
G
A
C
T
T
C
T
G
A
G
C
A
A
A
C
A
G
G
T
G
A
C
T
T
C
T
G
A
C
A
A
A
C
C
A
T
T
C
T
T
A
T
C
C
C
A
C
A
11000
A
G
C
C
T
C
A
T
T
T
T
G
C
C
C
T
T
G
C
A
G
G
C
T
C
A
G
C
G
C
C
T
G
A
C
T
T
T
T
C
T
T
T
C
A
A
C
T
T
C
11050
A
A
G
T
C
C
C
C
C
A
G
T
C
A
T
T
C
A
CC TTCTCTCCAC ACAGTTCCTT CTGCTTTGTT
11100
TTACAGCATT CTGCCCTCCT CGGGTGGCAA TGCTTTAAGT CAACACCAAC
11150
ATCTGACCTC TCCA
G
CTTAT CCACAGGACT TATCTTCTTA AGAGATGGTG
11200 |
var(11165):[A:0.01]
TGAGGACAAA GGGTGAGCCT TCCTGACTTG AATTAATGA
C
GACCCACAAT
11250 |
var(11240):[T:0.02]
TGAACAAGTT TCTAATGTTC ATATTTACAA AGAATATAGT CTAGAATCTC
11300
AGTTAAATCC ATATTAAAAG TAACCCCATG CATAACATTA TTCACACATA
11350
TAATTGAGAT AAATCTCAGC ACACAGATAG GAAAACAAAG ACAGTCAATT
11400
TCAAACAACT AATAAAATTA TTTAACCATT ACAAAATCCC TTAACCATGC
11450
C
G
AATTTTGC AAAATATCTA AGAAATTATT ATGCAAGACA CTGAAAGATG
11500 |
var(11452):[A:0.01]
TGTTATTAAG TAGTTAATTG GTATTTTTAA TAGTTAGGAC TGTTTTCCTC
11550
TTCTGTCTTC TCCTCCTCTC CTCTTTTCCT CCCACACTTT CTCCCTTCCT
11600
CTCCCTTTCT CTCTCTCTCC CTCTCTCTCT CTCACACACA CACAGACACA
11650
CAAACACAAA CACACACCCC TTGCTGGTTA AAAACTTCTT AAAAACATAC
11700
AACTGCCTGT ATTTGTATAT ATACATATGC ATTTGGTGTC TTGTTATAAC
11750
TTCCCTTTAA ACCACATATT AATGGGCAAA AAAAGTCCTA ACATTCTATC
11800
TGTTGAAAAG CTGGGTCTGT CTCCAATAAA CATAGTTGCT CGTTTCAGTC
11850
AAATCAGCTT ATTTACTAAT TATAAAATAT AATTTTAAGA TGGCCAAAAC
11900
GAAGTAGTAG GAAAAGTATA TTACTACTTT AATGGAATTT GCTTCTATTT
11950
TTGAGGTCTG TCCCAAAAGG ACAAATATGT TGACTTATTT TTAAAGGTTT
12000
CCTTTCAATG TTTCAAGTTA TAAAGCACTG CTGCTTTTGT AAAAGATCCT
12050
ATTAATTTCT TAACAGAGTG TTAGACCTGA TCCCCTTATA TCCAAAATGG
12100
TAAATGC
T
GT CTAATAAATA CATGGGTGAT TGAATAAG
G
G TCACTGACAC
12150 |
var(12108):[:0.01]
|
var(12139):[A:0.03]
TTGGGTAACT GTTTAATACA GAAACAATTT ATAATATATA TCTCTCTACA
12200
AAACTAAAGC TGAGCAATCA ATAATTTTGT CTTCCTTCGT CTACAAGTAG
12250
CTTATTCAAC ATT
A
ACTAGT AAACCAAGGG TGAAAGGGAG GGTTGTAAAT
12300 |
var(12264):[T:0.01]
CACGAAGAAA AGATTCATTT TATTCTTAAT TCCCACTTGA ATCTATGTAA
12350
AATGTTAAGT TACAGACAGT TAAGGAGAAG CTGTTGTGTT TGAATATGTA
12400
ATTGCTATTT AGATGATAAT GGC
G
TGGATG TCGCAGCAGA ACCATGATCC
12450 |
var(12424):[A:0.05]
AAATTTGAAT AAGGTCTTAA TGAAGGAGGC TAAGAGAAGA ATGACGACTG
12500
AAATACAACA GTGTCAGCAA CAGACCTTAA TGAAGCAAAT TACTTTCAGT
12550
ACCTTTGTGA TTCAGGAGGA GCCGCATTAA AAAAGTGACA ACTAAAGGAT
12600
CAAAAGCAGG ACCTTTGCAA ACTAAACATG CTTAAAACAT GACATCACTG
12650
TCTGGGCAAC AAGGCATTGT GGAAAGCAGC CTCAATGTTT GGGTTTTACA
12700
GCTCACATAG CAAAATAACT ACATTAAAAG ATCTGGCTAG GCAAACCAGT
12750
TTCCTTAGAA AGCATCTTTA TATTTCAAGT TAATGACATT TCTGAACAGA
12800
AAAGGACTAC AAATGCCCAA AGATACCTTG GCCGATTTTT AAAAAGCATT
12850
ATATATTAAC ACTAAGAATA GCTTTAAGGC AAAATTAAGC CAGATTTTGG
12900
ATCACAGAAA ACTAAAGAGG TCTTTTTTAA ATTCCAAAAT ATCATTTA
G
T
12950 |
var(12949):[T:0.28]
CTTTTATTAT TTGTTAGCTT TATGAAGTAT ACAATGCATT CTACTTAATA
13000
AGTAGTGAAA TCACTTTATA TATTCATATT TTAAAATCAA TTTCACTTTT
13050
ACAAAATCAC ACTGAAGCAA TT
T
GAGAGCA TATGGCATTC CCACTGCCAA
13100 |
var(13073):[C:0.01]
ATGGAACATA CGTTCAACAT GTTT
A
A
A
T
G
A
T
T
T
A
C
C
C
A
A
G
G
T
A
A
C
A
T
T
G
C
13150 |
REPEAT
T
G
A
T
G
G
T
G
C
T
A
G
A
A
A
C
T
G
A
A
C
A
C
A
A
G
G
C
T
T
C
T
G
G
C
T
T
C
C
A
G
GGAAAGTCA
13200
TTCAAGGCAA GCAAAAAGTA CCGTAGTTAC AAATTTAATT TGATACCTAG
13250
AGGATATTTT CTGAAGTCTT CTGAGTTACA GTAACTTGGT GATAACATTC
13300
ATTCCATATT AATATTGTAG GCAGACAAGG AGTTTATAAC CATAATGAAT
13350
ATAATCTTTG CTGTACAGAC CAGTATTCAC ACAGGGTTGT AAAAACTGAT
13400
TTTGCCTGTT TATTCCATCT CCTCAAATAA TGTGCACAAA CAGCAATCCT
13450
ACCAACCAGG GAATGGTAGT ACAATAGTTA TATATTTATA ATCAGAAAAC
13500
AACTCCTCAA TGCTAATTAA TTAGTGT
C
CT GACACAGTCA TGTTTCTGTT
13550 |
var(13528):[T:0.06]
TCTAGAGACT GACTAAAAAT GTTTTGACTT CAAAGACAAG AATGAGACAA
13600
GAATATAAGC CTGGCATTAG GAAAGATTTG CTGTCATCTC CCTGGGCCTC
13650
TGT
T
AGGATC TTAGCCACCC CTGCAAATGT TTGTGCTGCA ATGGATTTTA
13700 |
var(13654):[C:0.02]
TTTTAAATCT AAGTAAGTCA AGATGCTCTA TCCAAAAAAT AACAAAACCA
13750
ACAGATAGGA T
G
T
A
G
A
A
C
A
T
A
C
G
G
A
T
T
A
A
G
A
G
C
A
C
A
G
A
C
T
C
A
G
A
C
A
A
T
C
T
13800 |
REPEAT
A
G
T
T
T
A
A
A
A
T
C
C
C
A
G
C
T
G
T
C
A
C
T
T
A
C
T
A
A
C
C
A
C
G
C
A
C
T
C
T
T
A
C
G
C
A
A
G
T
T
13850
A
G
T
C
A
A
C
C
T
C
A
T
C
G
A
C
A
C
T
T
T
G
T
T
T
T
C
C
C
A
T
C
T
G
T
G
A
G
T
T
A
G
A
A
A
T
A
A
T
A
13900
G
T
A
C
T
A
A
G
T
T
C
T
T
A
G
A
G
T
T
C
T
T
A
T
G
T
A
A
A
T
G
A
G
T
T
A
T
T
A
T TAGTTATCTT
13950 |
var(13915):[C:0.01]
CAT
T
A
T
T
A
C
C
T
A
C
T
A
G
T
A
T
G
T
G
C
C
T
T
T
G
G
A
T
G
G
G
T
T
A
C
T
T
A
A
G
T
T
T
T
G
T
A
14000 |
REPEAT
T
T
C
C
T
C
A
T
T
T
T
T
T
C
C
A
A
T
T
T
T
A
A
A
A
AATGA TATCTAACAT TTTCAGGCAC
14050
AATTTAAATG AGGCTTTGGA AACTCTGGAA ATATTACATA TATTGTTAGC
14100
ATTGTTATAT AG
G
TTTCATT TTTGGTTTTG GAATCACTGA ACCTAGTACA
14150 |
var(14113):[T:0.32]
GTTCCCATGC TCTGTTGGTA TTTCCTGAAC TTCTCTCTCT CTCTTCCAAT
14200
CATACATGCT CTAACCAGCA AACCCAGACT AGGGTGATAA CATGAGCAGC
14250
CTCACTACTT CCACCTCTTC TAGATTTTCC CAAAATCTGT ACCAACAGAT
14300
AATTTTTAGA CTCTTTTTGA TGATTTTTTT CATCTCAGAA GGTGATTATC
14350
CGTTTTGTTC TGACTCAACA TGGACTTCAC ATATTTTCAC TAATTACTCT
14400
CTCTTCCCCA AATCAGTCAA CATACACAAC ACTATTGAGA TAATCTACTT
14450
TCTTTGTAGC ATCCTGACTC CATCATAACT TTGAATGGTG ACTTCCATAA
14500
TTTATTCTAG GGAATAATGA CTTCATCCTG TATTTTTCCA TGTAAAAATA
14550
GCAACAAAGA TTTCTAATAA
A
AGATTATAG AGTACACATA CC
T
T
T
T
T
A
A
A
14600 |
var(14571):[G:0.02]
|
REPEAT
G
C
A
G
A
G
G
T
T
A
T
T
T
T
T
T
A
G
A
G
C
A
G
T
T
T
T
A
G
G
T
T
C
A
T
A
G
C
A
A
A
A
T
T
G
A
A
C
A
G
14650
A
A
G
G
T
A
C
A
G
A
G
A
A
T
T
C
C
C
A
T
A
T
A
A
C
T
C
C
T
G
C
C
C
C
T
A
C
A
C
A
T
G
C
A
C
A
C
C
C
T
14700
C
C
C
C
C
A
T
T
T
A
C
A
A
C
C
T
C
C
C
C
A
C
C
A
G
A
A
A
G
G
A
A
T
G
T
T
T
A
T
T
A
C
A
A
T
T
G
A
T
G
14750
A
A
C
A
T
A
C
A
C
T
G
A
C
A
C
A
T
C
G
C
T
A
T
C
A
C
C
A
A
A
G
T
C
C
A
T
A
T
T
T
T
A
C
A
T
T
A
G
G
G
14800
T
T
C
A
G
T
C
T
T
T
T
T
A
T
T
T
T
A
T
A
T
T
C
T
A
T
G
A
G
T
T
T
G
G
A
C
A
A
A
T
T
T
A
T
A
A
T
G
A
C
14850
A
T
G
T
A
C
C
C
A
C
C
A
A
T
A
T
A
T
T
A
A
C
A
T
A
A
G
A
G
T
A
G
T
T
T
C
A
C
T
A
C
C
C
T
A
A
A
A
A
T
14900 |
var(14852):[C:0.01]
C
C
T
AAAAACA TTCAGTTCTC TGTTTATAAA TAAGTTCGAC TGTTTCATCT
14950
TGAACTCTAA TTCATTATCC CTATAATAGA AATACTAATA TGA
T
TATGAA
15000 |
var(14994):[C:0.06]
AACAATGGAT TACACAAGCA TAGTACTTAG AGCCAGATGA TTACATACAA
15050
TATGTATTAA GCATTTTGTA ATAACACACT GAATATAAAC ACTG
G
GTGCA
15100 |
var(15095):[C:0.01]
GGCTGTACA
G
AGCAGTGACC CAAACCAATT ACATTAACTT AAACCTACAT
15150 |
var(15110):[A:0.01]
AGTTATTTTA TCGTGCTTAC ATTTTTAGAA CATGTAAAAT TACTTTTTAA
15200
ACTCCAAAGC ACTCTAATAA TGTAGGTGGT TATTATGATT AAACATTTTT
15250
AAGATTCTAT TTTTTTATAA GTCAGATATT TTTCCAAAAC
A
G
A
A
T
C
T
T
A
A
15300 |
NOT SCANNED
T
G
A
C
A
A
A
A
C
T
A
A
A
T
C
A
C
A
G
T
G
C
A
T
C
A
A
C
T
A
T
A
C
G
A
A
C
T
T
C
G
T
T
A
C
A
A
T
C
A
15350
T
C
T
T
G
G
A
A
G
T
T
T
A
T
A
T
G
C
C
A
C
T
T
C
C
T
A
T
T
C
C
A
T
G
C
A
T
G
T
C
A
A
C
A
A
G
A
T
T
C
15400
C
T
A
A
G
T
T
G
A
G
A
T
C
T
C
T
T
C
T
C
A
T
C
A
T
T
G
C
A
T
A
A
A
A
A
G
T
T
C
A
A
A
A
A
C
A
A
A
G
A
15450
C
T
G
G
T
T
T
A
C
A
A
C
A
T
G
T
C
A
G
A
A
C
A
G
G
A
G
C
T
C
C
C
T
T
C
A
A
T
T
C
A
G
A
A
T
A
A
T
A
A
15500
C
A
A
T
G
C
C
A
G
A
A
A
G
A
A
T
G
T
C
A
G
T
A
G
T
C
C
T
G
T
G
T
T
A
C
A
G
A
T
G
C
C
A
A
G
A
A
G
C
A
15550
C
C
A
T
G
G
T
T
C
A
C
A
A
T
C
A
G
C
G
C
C
C
T
T
C
C
T
C
T
T
C
T
G
T
A
T
C
T
G
T
A
A
A
G
G
C
A
T
G
C
15600
T
G
A
G
T
T
T
A
T
C
C
A
G
A
A
T
C
T
T
C
T
T
T
T
C
A
T
T
C
A
G
A
T
G
A
T
G
A
A
T
A
C
T
G
T
T
T
A
G
A
15650
A
T
C
T
G
C
C
C
A
T
C
T
T
C
T
A
G
G
C
C
T
A
T
T
T
T
A
C
T
T
T
A
C
C
C
A
A
A
T
A
A
A
A
C
A
C
A
T
C
G
15700
T
T
T
T
T
T
T
T
C
A
A
T
T
G
A
T
G
A
C
C
C
T
T
T
T
G
T
G
A
T
T
A
A
A
G
A
C
A
A
T
C
T
A
T
A
A
G
T
T
A
15750
A
A
C
T
G
G
C
A
T
T
T
A
A
G
T
A
C
A
G
A
A
G
C
A
A
G
T
C
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
15800 |
REPEAT
T
T
T
T
T
G
A
G
A
T
G
G
A
G
T
C
T
C
G
C
T
C
T
G
T
C
A
C
C
C
A
G
G
C
T
G
G
A
G
T
A
C
A
G
T
G
G
T
G
C
15850
G
A
T
C
T
C
A
G
C
T
C
A
C
T
G
C
A
A
C
C
T
C
C
A
C
C
C
C
C
T
G
G
G
T
T
C
A
A
G
T
G
A
T
T
C
T
C
A
C
C
15900
C
T
C
A
G
C
T
T
T
C
T
G
A
A
T
G
G
C
T
G
G
G
A
C
T
A
C
A
G
A
C
G
T
G
C
A
T
G
A
C
C
A
T
G
C
C
C
A
G
C
15950
T
A
A
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
C
T
A
T
T
T
T
A
G
T
A
G
A
G
A
C
A
G
G
G
T
T
T
C
A
C
C
16000
A
T
A
T
T
G
G
C
C
A
G
G
C
T
A
G
T
C
T
T
G
A
A
C
T
C
C
T
G
A
C
T
T
T
G
T
G
A
T
C
C
G
C
C
C
A
C
C
T
C
16050
G
G
C
T
T
C
C
C
A
A
A
G
T
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
A
T
G
A
G
C
C
A
C
C
G
C
G
C
C
C
G
G
C
C
C
A
16100
G
A
A
G
C
A
A
T
T
C
T
T
T
A
T
G
G
C
A
G
C
A
G
T
T
G
T
T
A
A
A
C
T
C
T
G
T
G
A
T
C
T
C
C
A
A
G
A
C
C
16150 |
REPEAT
T
C
T
T
T
A
T
G
C
T
C
T
C
A
A
A
A
A
T
T
A
C
T
G
A
G
G
A
C
C
C
A
A
A
G
G
A
C
T
C
T
T
A
C
G
T
C
A
G
T
16200
T
A
T
A
T
C
T
G
T
T
A
A
T
A
T
T
T
T
T
C
A
T
A
T
T
A
G
A
A
A
T
C
A
A
A
A
C
T
T
C
A
A
A
A
C
A
A
A
T
T
16250
T
T
A
A
A
T
A
T
A
T
T
T
A
T
T
A
A
G
T
T
A
A
C
T
G
T
T
T
T
A
C
A
T
A
T
T
T
A
C
A
T
G
A
A
T
G
T
T
T
C
16300
T
A
T
G
A
A
A
A
A
T
G
A
C
T
A
T
A
T
T
T
T
C
C
A
A
A
A
C
A
A
A
A
A
G
A
A
A
G
G
T
A
G
T
A
A
A
A
A
G
A
16350
G
T
A
G
C
C
T
T
A
T
A
A
T
T
T
T
A
C
A
A
A
T
A
T
C
C
T
T
A
A
T
T
T
C
T
A
G
C
T
C
A
A
C
A
G
A
A
A
A
C
16400
A
G
T
T
G
G
C
C
T
T
T
C
T
C
T
T
C
T
G
C
A
T
T
C
A
G
A
C
T
A
T
C
A
T
G
A
T
G
T
G
T
T
G
T
T
T
A
G
T
T
16450
G
A
A
A
T
A
C
A
A
T
A
A
A
G
A
A
A
A
C
A
C
A
G
C
C
T
C
A
C
A
C
A
C
A
G
A
T
A
C
T
T
A
G
T
T
G
G
A
A
A
16500
A
G
G
A
A
G
A
T
G
T
C
T
G
G
G
A
T
T
C
C
A
T
C
A
A
A
G
T
A
T
C
T
C
C
T
T
G
A
G
A
A
C
T
G
T
T
G
C
T
C
16550
T
A
A
G
G
T
A
T
G
T
C
T
A
T
G
T
T
T
C
T
T
T
T
C
T
T
T
T
C
T
T
T
C
C
T
T
C
C
T
T
C
C
C
T
T
C
C
C
T
C
16600
C
T
T
C
C
C
T
T
C
C
T
T
C
C
T
T
C
T
T
T
C
T
T
T
C
C
T
T
T
G
T
T
A
A
G
A
G
A
C
A
G
G
T
T
A
T
C
T
G
T
16650 |
REPEAT
C
G
C
C
C
A
G
G
C
T
T
C
A
C
T
G
C
A
G
T
G
A
C
A
C
A
G
T
C
A
T
G
G
C
T
C
A
C
T
G
C
A
A
C
C
T
C
A
A
C
16700
C
T
C
C
C
A
G
G
C
T
C
A
A
G
C
A
A
T
C
C
T
C
C
T
A
C
C
T
C
A
G
C
C
T
C
C
C
A
A
A
T
A
G
C
T
G
G
G
A
C
16750
T
A
C
A
G
G
G
G
C
A
C
G
C
C
A
C
C
A
C
A
T
T
A
C
C
T
G
G
C
T
A
A
T
T
T
T
G
C
A
T
T
A
T
T
T
G
T
A
G
A
16800
A
A
C
G
G
G
G
T
T
T
C
G
C
C
A
C
G
T
T
G
C
C
C
A
G
G
C
T
G
A
T
C
T
C
A
A
A
C
T
C
C
T
G
G
G
C
T
C
A
A
16850
G
C
G
A
T
C
T
G
C
C
A
G
T
C
T
C
G
G
C
T
T
C
C
C
A
A
A
G
T
G
C
T
G
A
G
A
T
G
T
C
T
G
C
G
T
T
T
C
A
T
16900
A
A
T
T
A
A
A
A
C
A
T
C
C
T
A
T
T
G
G
C
C
A
G
A
G
A
A
G
A
A
G
G
A
A
C
T
G
A
A
C
T
T
T
G
G
C
C
C
T
G
16950
A
A
C
T
G
A
T
T
A
G
G
A
C
A
A
A
T
T
G
T
T
G
T
T
A
G
C
A
C
C
T
G
T
G
T
T
G
T
A
A
G
T
G
C
C
T
G
T
A
T
17000
T
T
T
G
A
G
C
T
T
G
T
C
T
G
A
A
A
C
C
T
G
A
G
T
C
A
G
G
A
C
C
T
C
T
G
G
G
A
T
T
C
A
A
T
A
T
A
G
G
T
17050
T
A
C
A
A
A
A
A
G
A
T
G
T
T
T
A
T
A
A
A
A
T
T
A
T
G
T
G
T
A
T
G
T
G
C
T
A
T
A
T
C
C
A
C
A
C
A
A
T
G
17100
A
A
T
A
A
A
A
T
T
T
A
G
T
T
T
T
C
T
T
T
T
T
A
T
T
T
A
A
T
A
A
A
T
A
A
G
A
A
A
T
T
A
G
A
G
C
A
C
T
C
17150
A
C
A
A
A
A
T
G
G
T
A
C
T
T
C
A
T
A
C
T
A
A
A
A
A
G
T
T
A
A
A
A
A
T
T
C
T
A
T
A
G
G
T
A
A
A
T
A
A
A
17200
T
T
A
G
A
T
G
G
A
A
A
A
T
C
T
C
T
T
C
T
T
C
A
G
T
C
T
A
A
A
T
T
T
T
G
A
T
A
A
A
A
G
A
T
C
A
A
T
T
T
17250
A
A
A
C
T
G
C
A
A
C
C
T
T
A
A
A
T
G
A
G
A
A
C
A
C
A
C
G
A
A
T
T
C
C
A
T
A
A
T
T
C
A
G
G
A
A
A
C
T
A
17300
C
A
T
T
A
T
T
T
T
T
A
T
T
A
T
A
G
A
A
G
C
C
T
C
A
C
T
G
T
A
A
G
C
A
C
A
T
T
T
T
T
A
A
A
A
T
C
T
C
A
17350
G
C
A
A
A
A
A
A
G
A
G
T
A
C
A
A
A
C
A
T
C
A
A
G
T
G
G
A
T
T
T
T
A
A
T
C
A
C
C
A
T
T
T
T
A
G
T
G
G
G
17400
C
A
C
C
A
G
T
A
A
T
T
A
T
T
T
T
C
G
G
C
A
A
A
T
A
A
A
A
T
A
A
A
C
T
A
C
A
G