Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop 000463 G 9 0 9 C 43 42 175 000620 A 0 2 2 G 54 42 186 000655 A 6 2 9 G 48 42 179 000720 T 9 18 36 C 45 26 152 000754 G 25 19 59 A 29 23 129 000802 T 9 0 9 C 41 42 165 000860 T 5 2 7 C 45 40 167 001013 T 0 1 1 C 50 41 173 001235 A 0 0 1 G 50 42 173 005175 A 4 2 7 G 46 42 173 005282 A 0 0 5 G 52 44 181 005531 G 1 0 1 A 51 40 183 005596 - 1 0 1 + 53 40 185 005777 A 1 0 1 G 51 44 185 005861 C 0 0 3 T 52 44 183 005864 G 13 20 43 T 39 24 143 005918 C 14 20 44 T 38 24 142 005925 A 0 0 5 G 52 44 181 005956 A 13 20 43 G 39 24 143 006012 G 24 20 59 T 28 24 127 006219 T 0 0 6 C 52 44 180 007557 - 1 0 1 + 53 44 187 008068 T 1 0 1 A 53 44 185 008190 G 15 20 45 C 39 24 145 008228 T 2 0 2 C 52 44 188 008349 G 1 0 1 A 53 44 189 008553 G 1 0 1 C 53 44 189 008951 C 1 0 1 G 43 40 159 008967 A 1 0 1 G 43 40 161 008974 T 4 2 7 C 40 38 155 008982 T 12 19 38 C 32 21 124 008996 G 0 0 1 A 44 40 161 009276 T 12 19 38 C 32 21 124 016110 G 0 0 1 A 52 44 187 016390 C 0 0 1 T 52 44 187 016555 G 10 0 10 A 42 44 178 016602 A 2 0 2 G 52 44 188 016897 C 16 20 44 A 34 24 138 017268 + 25 20 59 - 27 24 123 017269 T 6 1 7 C 46 43 175 017336 G 0 0 1 T 52 44 183 017563 T 1 0 1 G 49 44 179 033440 G 1 0 1 A 43 40 173 033453 T 1 0 1 C 43 42 175 033492 T 9 17 33 G 33 23 137 033520 T 0 0 1 G 42 40 171 033588 - 8 0 8 + 32 38 154 033621 A 1 0 1 G 51 44 183 033688 A 5 5 11 G 49 39 177 033887 A 0 0 1 G 54 44 189 034086 A 10 18 37 T 44 26 153 034115 T 4 0 5 C 50 44 185 035008 - 10 18 37 + 44 24 147 035017 T 8 0 12 C 30 22 130 035240 C 1 0 1 A 51 40 179 045874 - 0 0 1 + 54 44 189 046126 T 1 11 17 C 49 33 161 046212 G 0 4 6 C 50 40 172 046576 T 1 0 1 A 51 44 179 046585 T 0 1 2 C 52 43 178 048016 A 9 2 12 G 39 32 154 066832 A 34 22 66 C 16 20 108 066889 C 0 0 1 T 50 42 173 067023 T 2 0 2 C 48 42 174 067124 C 2 0 2 G 48 42 174 067142 C 2 0 2 T 48 42 174 067200 A 5 8 18 T 45 34 158 067427 G 2 0 2 A 46 42 172 067470 C 0 0 3 T 48 42 169 067623 - 1 0 1 + 53 40 181 067824 T 3 0 3 C 51 42 185 068047 - 2 0 2 + 52 42 186 068053 A 2 0 2 G 52 42 186 068141 G 5 1 6 T 49 41 182 068165 G 0 1 1 A 54 41 187 068233 T 0 1 1 C 54 41 187 068398 A 30 20 62 G 24 24 128 069031 G 2 0 2 A 52 44 188 069372 A 3 0 3 G 51 44 187 069386 G 0 2 2 A 54 42 188 069406 G 6 0 6 T 48 44 184 069432 C 2 0 2 T 52 44 188 069645 T 14 2 17 C 40 42 171 082026 A 2 0 2 C 48 44 170 097772 A 2 0 2 G 52 44 186 097977 T 0 0 1 C 52 44 187 099128 A 5 9 20 G 45 29 144 122878 A 3 0 3 G 51 44 187 123047 C 0 0 1 A 52 44 187 123049 C 13 2 20 A 39 42 168 123102 C 12 2 19 T 38 42 167 123112 - 1 0 1 + 51 44 187 123422 T 0 0 1 C 52 44 187 123431 A 28 13 53 G 24 31 135 123477 G 2 0 2 C 50 44 186 123683 C 2 0 2 T 52 40 184 123966 G 0 1 1 T 54 39 185 123971 G 4 0 4 A 50 40 182 124043 T 0 1 1 C 52 39 183 135698 A 0 0 1 G 54 44 189 135781 T 0 0 1 C 54 44 189 135876 T 15 2 22 C 39 42 168 135952 G 0 0 1 A 54 44 189 136202 A 15 2 22 G 39 42 168 136272 C 37 13 63 T 15 29 121 160506 G 0 0 1 A 54 44 189 160603 - 0 1 2 + 54 43 188 160840 A 0 0 1 G 54 42 187 161045 C 28 12 51 T 26 30 133 175458 C 1 0 1 A 45 40 173 175883 - 13 2 20 + 41 42 170 175899 T 1 0 1 C 51 44 187 175962 T 33 13 58 G 19 31 130 176032 T 4 0 4 G 48 44 184 176169 G 2 0 2 A 42 44 172 176220 C 0 0 1 T 38 44 171 176258 - 3 1 4 + 37 43 170 176469 C 6 0 6 G 36 44 170 176483 + 2 0 2 - 42 44 176 176588 G 0 3 3 A 46 41 177 176827 T 0 0 5 G 50 44 179 201680 T 0 0 1 C 52 44 187 202109 G 2 0 2 A 50 44 186 202135 A 2 0 2 T 50 42 184 202344 A 0 0 1 G 52 44 183 202561 G 0 0 1 A 54 44 189 202890 - 0 0 1 + 52 44 187 203612 C 2 0 3 T 50 44 185 235462 T 0 1 1 C 54 43 187 235681 C 0 0 1 G 54 44 189 235788 A 0 1 1 G 54 43 189 236149 G 9 11 27 C 45 33 163 237652 G 1 0 1 A 51 44 187 256557 - 4 0 4 + 46 44 182 256652 T 1 0 1 C 49 44 185 256790 T 0 0 3 C 50 44 183 256842 A 2 0 2 G 48 44 184 256875 A 2 1 4 C 48 43 182 256940 A 0 7 13 G 50 37 173 257289 C 1 7 14 G 51 35 172 257297 G 0 0 1 C 52 42 185 257341 G 1 0 1 T 51 42 185 257532 T 0 1 1 C 52 41 185 257570 T 1 0 1 C 51 42 185 257578 T 1 0 1 C 51 42 185 257621 A 1 0 1 G 51 42 185 258125 A 2 0 2 G 50 44 186 258203 T 3 0 3 C 49 44 185 258484 - 13 2 20 + 39 42 166 258677 G 0 0 1 A 48 44 181 269023 C 38 9 54 T 10 25 98 269562 T 3 0 3 C 47 40 165 292721 C 0 0 1 T 50 34 157 292842 T 0 1 1 C 52 41 171 292999 G 0 1 1 A 54 43 185 293087 G 0 1 2 A 54 43 184 293386 C 35 10 57 T 17 30 121 293440 T 2 0 2 G 52 42 184 293443 C 0 1 1 A 54 41 185 293448 G 0 0 1 A 54 42 185 293539 A 0 1 1 G 54 41 185 293621 G 2 0 2 T 52 42 180 294006 G 2 0 2 A 50 42 184 294183 A 0 0 1 C 46 38 157 294367 T 0 0 1 A 50 42 175 294540 T 0 1 1 C 50 43 179 294633 C 2 0 2 T 48 44 178 294681 A 23 0 26 G 27 44 154 294769 - 0 0 1 + 50 44 183 294805 G 21 0 24 A 29 44 158 326848 T 3 0 4 G 51 44 186 327033 A 2 0 2 G 52 44 188 327081 G 1 0 1 A 53 44 189 327138 C 0 1 1 T 54 43 189 327180 A 0 0 2 G 54 44 188 327264 G 1 0 1 A 53 44 189 327302 C 1 0 1 A 53 44 189 327489 A 1 0 1 G 53 44 187 327578 T 4 0 4 C 50 44 184 328265 - 6 10 23 + 42 34 159 328281 A 4 0 4 G 44 44 180 328416 G 14 10 31 A 34 34 153 328438 A 2 1 3 G 46 43 181 328508 T 1 0 1 C 47 44 183 328526 A 3 0 3 G 45 44 181 328594 T 2 0 2 C 46 44 182 328645 T 1 0 1 C 47 44 183 372412 - 12 6 23 + 34 22 117 372556 C 0 1 2 G 54 43 188 372668 T 13 10 30 C 41 34 160 372902 T 10 8 23 A 40 30 141 373970 T 4 0 4 G 50 44 186 374086 G 0 0 1 A 54 44 189 411927 + 3 0 3 - 39 36 145 412026 T 0 0 1 C 42 36 147 412819 G 2 0 2 A 52 44 188 443742 T 2 0 2 A 50 44 186 443828 A 0 1 1 G 54 43 189 443936 T 47 15 76 C 7 29 114 443950 G 0 0 1 C 54 44 189 443990 C 35 15 65 T 19 29 125 444145 T 12 0 12 C 42 44 178 445392 G 3 0 3 A 37 40 153 445510 T 1 0 1 C 43 42 163 445916 T 0 0 1 C 44 42 163 473979 T 1 0 3 G 53 44 187 474029 C 4 0 4 T 50 44 186 474063 C 3 0 3 T 51 44 187 474086 C 17 0 23 T 37 44 167 474362 T 3 0 3 G 51 44 187 474405 C 0 1 1 A 54 43 189 474891 G 9 0 9 C 45 42 173 474973 C 4 0 4 A 50 42 178 475003 A 0 0 1 G 54 42 181 475104 C 1 0 3 T 53 42 179 475160 T 0 0 1 G 54 42 181 475254 T 0 0 1 G 54 42 181 475331 T 3 0 3 G 51 42 177 475509 C 0 4 6 A 54 38 176 475652 C 49 13 75 T 5 29 107 475696 T 19 0 20 C 35 42 162 475856 G 10 0 11 T 42 42 169 475895 A 0 0 1 G 54 42 181 500332 T 1 0 1 A 45 36 165 500394 T 4 0 4 C 46 44 180 500395 A 4 0 4 G 46 44 180 500410 G 24 11 62 A 26 33 122 500588 G 40 17 88 A 12 27 98 500650 A 0 0 4 G 52 44 182 500794 C 1 0 1 T 51 44 185 500844 A 14 6 24 G 38 38 162 501432 C 1 0 1 T 45 42 179 501505 C 0 0 4 T 48 42 178 501810 A 24 11 62 G 26 31 120 501881 C 1 0 1 G 47 44 171 501967 T 2 0 2 G 46 44 170 502171 G 0 0 1 A 48 44 171 502298 C 18 6 28 T 30 38 144 502308 A 7 27 86 G 41 17 88 502504 G 3 27 77 A 45 17 91 502517 G 7 5 14 A 41 39 154 527613 A 0 1 1 G 50 43 179 527991 T 4 0 6 C 46 44 176 528045 T 3 0 3 C 47 44 181 528173 C 4 27 91 T 46 17 93 528181 T 7 5 14 C 43 39 170 528267 C 4 27 91 T 46 17 93 528337 C 0 0 2 T 50 44 182 547394 T 1 0 1 C 51 42 185 547421 T 1 0 6 C 51 42 180 547601 A 1 9 16 G 53 33 172 547710 G 0 7 8 A 54 35 180 548201 T 1 0 1 G 53 44 189 548325 T 11 8 25 C 37 26 145 548478 G 11 21 85 A 43 23 105 548540 G 3 0 3 A 51 44 187 548564 G 2 0 2 A 52 44 186 548603 C 0 0 2 T 50 44 180 548724 T 2 4 9 C 52 38 177 548850 A 0 0 1 G 54 42 185 548950 A 1 0 1 G 53 44 189 562713 C 0 1 1 A 48 37 161 562968 A 4 0 4 G 48 42 174 562987 T 2 0 2 C 50 42 176 563328 T 0 1 1 C 52 39 171 563345 A 2 0 2 T 50 40 170 563512 G 1 0 1 A 53 42 185 563520 C 12 8 44 G 42 34 142 563773 A 9 20 73 G 39 22 99 563902 T 1 1 2 C 49 43 178 564113 T 5 0 5 C 49 44 183 564154 C 4 11 23 T 50 33 165 564393 A 1 0 1 G 51 44 187 564583 A 2 0 2 G 38 44 170 564731 - 11 20 78 + 37 22 100 592761 A 17 17 83 G 35 23 97 593040 C 1 3 4 T 35 33 142 593481 T 3 0 3 C 47 44 179 593549 G 18 6 49 A 32 38 137 593704 T 0 0 2 C 52 44 186 593880 A 32 14 80 C 18 30 106 594093 G 9 14 69 A 45 30 121 594271 T 11 1 13 C 41 43 173 594447 G 14 7 30 A 24 37 136 594497 A 0 5 7 G 46 39 173 594602 T 6 0 7 C 48 44 181 621796 C 27 13 48 T 23 31 132 622265 T 1 0 1 C 53 44 189 622277 C 2 12 23 T 52 32 167 622344 G 2 12 23 A 52 32 167 622372 + 12 0 12 - 38 44 170 648682 C 1 6 14 A 53 38 176 648695 C 4 0 4 A 50 44 186 648754 A 0 0 2 G 54 44 188 648760 A 0 2 3 G 54 42 187 648798 + 0 0 1 - 54 44 189 648864 C 1 0 1 G 53 44 187 648888 C 1 0 1 G 53 44 189 649056 A 1 0 1 G 53 44 189 649198 G 1 0 1 T 53 44 189 650206 A 9 15 71 G 45 29 117 650376 T 1 0 1 A 53 44 187 650628 A 32 12 75 G 22 32 113 650914 A 26 12 70 G 28 32 118 651146 T 1 0 1 C 37 42 161 651262 - 1 0 1 + 41 42 175 651275 C 10 1 12 G 32 41 164 651344 - 6 0 6 + 48 42 182 659589 G 4 10 25 A 48 34 157 659651 T 1 0 1 C 51 44 181 659663 G 29 11 69 T 23 33 113 659677 A 0 0 1 C 52 44 181 659690 T 0 1 1 C 52 43 181 659761 C 29 12 70 T 23 32 112 659980 A 6 0 6 G 48 44 184 660020 A 0 0 3 G 54 44 187 660037 T 0 0 1 G 54 44 189 660139 A 4 1 6 G 44 41 174 660210 A 1 0 1 G 49 42 181 Note: ED : European Descent AD : African Descent pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 005596: CTTT 007557: atctg 017268: A 033588: GGAAG 035008: A 045874: A 067623: T 068047: GT 123112: ACCTCT 160603: AATCCCTCCAGCCTCTGCGTT 175883: TT 176258: t 176483: T 202890: TGT 256557: tctt 258484: GGAGC 294769: g 328265: CT 372412: T 411927: GCTGCCTGTTCAGT 564731: attt 622372: T 648798: CCTC 651262: gct 651344: c