Site Genotype1 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype2 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype3 AD-pop ED-pop HD-pop XD-pop Total-pop AD-chi2 ED-chi2 HD-chi2 XD-chi2 Total-chi2 000069 CC 18 22 21 24 85 CT 7 0 1 0 8 TT 0 0 0 0 0 0.663 0.000 0.012 0.000 0.188 000070 AA 0 0 0 0 0 AG 0 0 1 0 1 GG 25 22 21 24 92 0.000 0.000 0.012 0.000 0.003 000079 AA 24 21 22 24 91 AG 1 1 0 0 2 GG 0 0 0 0 0 0.010 0.012 0.000 0.000 0.011 000101 CC 25 20 22 24 91 CT 0 2 0 0 2 TT 0 0 0 0 0 0.000 0.050 0.000 0.000 0.011 000161 AA 0 0 0 0 0 AT 0 2 0 0 2 TT 25 20 22 24 91 0.000 0.050 0.000 0.000 0.011 000260 CC 0 0 0 0 0 CT 7 0 1 0 8 TT 18 22 21 24 85 0.663 0.000 0.012 0.000 0.188 000471 AA 24 19 17 17 77 AG 1 3 5 7 16 GG 0 0 0 0 0 0.010 0.118 0.362 0.700 0.824 000500 CC 9 3 1 9 22 CT 12 7 8 13 40 TT 4 12 13 2 31 0.000 1.223 0.027 0.813 1.612 000502 CC 0 0 0 0 0 CT 3 0 0 0 3 TT 22 22 22 24 90 0.102 0.000 0.000 0.000 0.025 001102 GG 26 16 17 24 83 GT 1 6 5 0 12 TT 0 0 0 0 0 0.010 0.548 0.362 0.000 0.432 001267 GG 0 0 0 0 0 GT 6 0 0 0 6 TT 21 22 22 24 89 0.422 0.000 0.000 0.000 0.101 001453 CC 24 22 22 24 92 CT 3 0 0 0 3 TT 0 0 0 0 0 0.093 0.000 0.000 0.000 0.024 001539 CC 0 0 0 0 0 CT 2 0 0 0 2 TT 24 22 22 24 92 0.042 0.000 0.000 0.000 0.011 001688 AA 18 18 21 20 77 AT 7 0 1 0 8 TT 0 0 0 0 0 0.663 0.000 0.012 0.000 0.207 001779 -- 17 6 4 8 35 +- 8 10 9 4 31 ++ 2 6 6 4 18 0.551 0.182 0.034 3.484 4.458 001875 AA 0 0 0 0 0 AT 0 0 0 1 1 TT 27 22 22 23 94 0.000 0.000 0.000 0.011 0.003 002269 CC 26 21 22 21 90 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 002363 GG 1 2 0 4 7 GT 12 6 3 12 33 TT 13 13 19 6 51 0.778 0.948 0.118 0.220 0.260 002443 AA 0 0 1 0 1 AG 0 0 4 0 4 GG 27 21 17 22 87 0.000 0.000 1.144 0.000 8.890 002977 AA 23 22 20 24 89 AG 3 0 1 0 4 GG 0 0 0 0 0 0.097 0.000 0.012 0.000 0.045 003005 AA 22 22 21 24 89 AG 4 0 0 0 4 GG 0 0 0 0 0 0.181 0.000 0.000 0.000 0.045 003085 CC 0 0 0 0 0 CT 2 0 0 0 2 TT 25 22 21 24 92 0.040 0.000 0.000 0.000 0.011 003690 AA 2 2 0 4 8 AG 14 6 4 15 39 GG 11 14 18 5 48 0.750 1.099 0.220 1.526 0.000 003825 AA 25 22 22 24 93 AG 2 0 0 0 2 GG 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 003924 AA 1 14 15 2 32 AG 12 6 7 14 39 GG 14 2 0 8 24 0.667 1.099 0.787 1.434 2.846 003929 AA 4 14 15 2 35 AG 12 6 7 14 39 GG 11 2 0 8 21 0.060 1.099 0.787 1.434 2.454 004465 AA 11 2 0 8 21 AG 12 6 7 13 38 GG 4 14 15 2 35 0.060 1.099 0.787 1.043 2.818 004470 AA 26 22 22 23 93 AT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 005053 CC 0 0 0 0 0 CT 6 0 1 0 7 TT 21 22 20 24 87 0.422 0.000 0.012 0.000 0.141 005100 CC 27 22 20 24 93 CT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 005750 AA 21 22 22 24 89 AG 5 0 0 0 5 GG 1 0 0 0 1 0.868 0.000 0.000 0.000 6.343 005886 CC 24 22 22 24 92 CG 3 0 0 0 3 GG 0 0 0 0 0 0.093 0.000 0.000 0.000 0.024 006098 CC 0 0 0 0 0 CT 0 0 1 0 1 TT 20 22 21 24 87 0.000 0.000 0.012 0.000 0.003 006160 CC 15 20 22 23 80 CT 0 1 0 0 1 TT 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 006272 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 27 21 22 24 94 0.000 0.012 0.000 0.000 0.003 006517 AA 0 0 0 0 0 AG 0 0 1 7 8 GG 27 22 21 17 87 0.000 0.000 0.012 0.700 0.184 006704 AA 25 22 22 24 93 AG 2 0 0 0 2 GG 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 007515 CC 0 0 0 0 0 CT 0 0 0 1 1 TT 25 21 22 23 91 0.000 0.000 0.000 0.011 0.003 007571 CC 0 0 0 0 0 CT 7 0 0 0 7 TT 18 21 22 24 85 0.663 0.000 0.000 0.000 0.144 007719 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 21 22 23 92 0.010 0.000 0.000 0.000 0.003 008012 AA 0 0 0 0 0 AG 0 3 4 0 7 GG 27 19 18 23 87 0.000 0.118 0.220 0.000 0.141 008044 AA 0 0 0 0 0 AG 1 0 2 0 3 GG 26 22 20 23 91 0.010 0.000 0.050 0.000 0.025 009174 CC 0 0 0 0 0 CT 0 1 0 0 1 TT 26 20 20 22 88 0.000 0.012 0.000 0.000 0.003 009488 AA 24 22 18 24 88 AT 3 0 2 0 5 TT 0 0 0 0 0 0.093 0.000 0.055 0.000 0.071 009739 CC 0 0 0 0 0 CT 3 0 0 0 3 TT 24 22 22 24 92 0.093 0.000 0.000 0.000 0.024 011072 AA 27 20 21 24 92 AG 0 0 1 0 1 GG 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 011252 AA 21 22 20 24 87 AT 6 0 2 0 8 TT 0 0 0 0 0 0.422 0.000 0.050 0.000 0.184 011262 AA 27 21 22 24 94 AC 0 1 0 0 1 CC 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 011314 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 011633 AA 27 20 21 24 92 AG 0 2 1 0 3 GG 0 0 0 0 0 0.000 0.050 0.012 0.000 0.024 011636 AA 23 22 22 24 91 AG 4 0 0 0 4 GG 0 0 0 0 0 0.173 0.000 0.000 0.000 0.044 011761 CC 27 22 22 23 94 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 011874 AA 11 14 18 5 48 AG 14 6 4 15 39 GG 2 2 0 4 8 0.750 1.099 0.220 1.526 0.000 011909 CC 0 0 0 0 0 CT 0 0 0 1 1 TT 27 22 22 23 94 0.000 0.000 0.000 0.011 0.003 012365 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 27 22 22 22 93 0.000 0.000 0.000 0.011 0.003 012446 CC 4 14 15 2 35 CT 12 6 7 13 38 TT 11 2 0 8 21 0.060 1.099 0.787 1.043 2.818 012746 CC 26 22 22 24 94 CG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 012792 -- 23 18 20 21 82 +- 0 1 0 0 1 ++ 0 0 0 0 0 0.000 0.014 0.000 0.000 0.003 012806 CC 27 22 21 24 94 CT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 012979 -- 0 0 0 0 0 +- 1 2 2 1 6 ++ 23 20 20 22 85 0.011 0.050 0.050 0.011 0.106 013029 AA 4 14 15 2 35 AG 12 6 7 14 39 GG 11 2 0 8 21 0.060 1.099 0.787 1.434 2.454 013031 AA 21 22 22 24 89 AG 6 0 0 0 6 GG 0 0 0 0 0 0.422 0.000 0.000 0.000 0.101 013084 AA 0 0 0 0 0 AT 0 0 1 0 1 TT 27 22 21 24 94 0.000 0.000 0.012 0.000 0.003 013086 AA 0 0 0 0 0 AT 0 0 1 0 1 TT 27 22 21 24 94 0.000 0.000 0.012 0.000 0.003 013264 AA 0 0 0 0 0 AG 1 1 0 0 2 GG 26 21 22 24 93 0.010 0.012 0.000 0.000 0.011 013527 CC 0 0 0 0 0 CG 1 1 0 0 2 GG 26 21 22 24 93 0.010 0.012 0.000 0.000 0.011 013756 CC 24 14 20 5 63 CT 3 6 2 15 26 TT 0 2 0 4 6 0.093 1.099 0.050 1.526 1.990 014023 CC 0 0 0 0 0 CG 7 0 0 0 7 GG 18 22 22 23 85 0.663 0.000 0.000 0.000 0.144 014057 AA 24 22 22 23 91 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 014127 AA 23 22 22 23 90 AG 2 0 0 0 2 GG 0 0 0 0 0 0.043 0.000 0.000 0.000 0.011 014236 CC 20 22 18 23 83 CT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.014 0.000 0.003 014258 CC 20 22 18 23 83 CT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.014 0.000 0.003 014309 AA 18 22 19 23 82 AT 2 0 0 0 2 TT 0 0 0 0 0 0.055 0.000 0.000 0.000 0.012 014363 AA 0 0 0 0 0 AT 0 0 0 1 1 TT 20 22 19 22 83 0.000 0.000 0.000 0.011 0.003 014377 -- 20 22 19 23 84 +- 6 0 2 0 8 ++ 0 0 0 0 0 0.442 0.000 0.053 0.000 0.190 014508 AA 0 0 0 0 0 AG 0 0 1 0 1 GG 26 22 20 23 91 0.000 0.000 0.012 0.000 0.003 014526 -- 0 0 0 0 0 +- 0 0 0 1 1 ++ 26 22 21 23 92 0.000 0.000 0.000 0.011 0.003 014531 AA 8 2 0 8 18 AG 16 6 5 14 41 GG 2 14 16 2 34 2.340 1.099 0.383 1.434 0.777 014560 CC 23 18 21 21 83 CT 2 0 0 0 2 TT 0 0 0 0 0 0.043 0.000 0.000 0.000 0.012 Note: AD: African_Descent ED: European_Descent HD: Hispanic_Descent XD: Asian_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 001779: CCCCG 012792: T 012979: CT 014377: T 014526: AGAC