LOCUS PRDX5 7637 bp DNA linear PRI 17-OCT-2005 DEFINITION Homo sapiens peroxiredoxin 5 (PRDX5) gene, complete cds. ACCESSION PRDX5 VERSION tmp KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 7637) AUTHORS Livingston,R.J., Rieder,M.J., Shaffer,T., Bertucci,C., Baier,C.N., Rajkumar,N., Willa,H.T.., Daniels,M., Downing,T.K., Stanaway,I.B., Nguyen,C.P., Gildersleeve,H., Cassidy,C.M., Johnson,E.J., Swanson,J.E., McFarland,I., Yool,B., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (17-OCT-2005) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..7637 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 327 /frequency="0.12" /replace="A" variation 658 /frequency="0.01" /replace="T" variation 1112 /frequency="0.01" /replace="G" variation 1120 /frequency="0.01" /replace="C" variation 1390 /frequency="0.02" /replace="A" variation 1440 /frequency="0.12" /replace="A" variation 1447 /frequency="0.07" /replace="C" variation 1458 /frequency="0.03" /replace="T" variation 1465 /frequency="0.01" /replace="A" variation 1495 /frequency="0.01" /replace="" variation 1532 /frequency="0.17" /replace="C" variation 1580 /frequency="0.01" /replace="A" variation 1623 /frequency="0.99" /replace="" variation 1683 /frequency="0.17" /replace="T" gene 1954..5668 /gene="PRDX5" mRNA join(1954..2243,3591..3725,4518..4649,4722..4760, 4864..4925,5443..5668) /gene="PRDX5" /product="PRDX5" CDS join(2073..2243,3591..3725,4518..4649,4722..4760, 4864..4925,5443..5548) /gene="PRDX5" /codon_start=1 /product="peroxiredoxin 5" /translation="MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVR SFSRAAAAMAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSK THLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKE TDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL" variation 2170 /gene="PRDX5" /frequency="0.04" /replace="A" variation 2323 /gene="PRDX5" /frequency="0.03" /replace="T" variation 2352 /gene="PRDX5" /frequency="0.12" /replace="G" repeat_region 2453..2765 /rpt_family="Alu" /rpt_type=dispersed variation 3170 /gene="PRDX5" /frequency="0.01" /replace="T" variation 3303 /gene="PRDX5" /frequency="0.01" /replace="G" variation 3491 /gene="PRDX5" /frequency="0.01" /replace="G" variation 3551 /gene="PRDX5" /frequency="0.01" /replace="A" variation 3754 /gene="PRDX5" /frequency="0.01" /replace="A" repeat_region 3855..4163 /rpt_family="Alu" /rpt_type=dispersed variation 4027 /gene="PRDX5" /frequency="0.25" /replace="T" variation 4068 /gene="PRDX5" /frequency="0.01" /replace="A" variation 4085 /gene="PRDX5" /frequency="0.11" /replace="C" variation 4211 /gene="PRDX5" /frequency="0.01" /replace="G" repeat_region 4243..4320 /rpt_family="L2" /rpt_type=dispersed variation 4820 /gene="PRDX5" /frequency="0.03" /replace="A" variation 5305 /gene="PRDX5" /frequency="0.01" /replace="C" variation 5336 /gene="PRDX5" /frequency="0.01" /replace="T" repeat_region 5458..5589 /rpt_family="MIR" /rpt_type=dispersed variation 5601 /gene="PRDX5" /frequency="0.10" /replace="G" repeat_region 5825..6125 /rpt_family="Alu" /rpt_type=dispersed variation 5966..5976 /frequency="0.02" /replace="" variation 5973 /frequency="0.24" /replace="T" variation 6058 /frequency="0.17" /replace="T" variation 6082 /frequency="0.03" /replace="C" variation 6083 /frequency="0.01" /replace="T" variation 6114 /frequency="0.01" /replace="G" variation 6259 /frequency="0.32" /replace="T" variation 6535 /frequency="0.01" /replace="A" variation 6807 /frequency="0.08" /replace="A" variation 6820 /frequency="0.11" /replace="A" variation 7387 /frequency="0.01" /replace="T" variation 7521 /frequency="0.01" /replace="T" variation 7524 /frequency="0.01" /replace="A" BASE COUNT 1527 a 2153 c 2284 g 1673 t ORIGIN 1 agaagctggg aacgtgtgtc caggctctgg gcacagtgct gccccttgca agccataacg 61 tgcccccaga gtgtaggggg ccttgcggaa gccatagggg gctgcacggg atgcgtggga 121 ggcagaaacc tatctcaggg agggaagggg atggaggcca gagtctccca gtgggtgatg 181 cttttgctgc tgcttaatcc taccccctct tcaaagcaga gtgggacttg gagagcaaag 241 gcccatgccc ccttcgctcc tcctctcatc atttgcattg ggcattagtg tccccccttg 301 aagcaataac tccaagcaga ctccagcccc tggacccctg gggtggccag ggcttcccca 361 tcagctccca acgagcctcc tcagggggta ggagagcact gcctctatgc cctgcagagc 421 aataacacta tatttatttt tgggtttggc cagggaggcg cagggacatg gggcaagcca 481 gggcccagag cccttgactg tacagagact ctattttaat gtatatttgc tgcaaagaga 541 aaccgctttt ggttttaaac ctttaatgag aaaaaaatat ataataccga gctcaaaaac 601 actgtgtttg gtgtcattgg gtcaagggtt ggggatacac acggcagaat tcggaaacag 661 ggtatagatc aacaaaaata cacagtcata acaagaaaaa ctggcgcctg gcacaatcaa 721 ctctcagttt cctcttcact cagcagcatg ttggggatcc cgcggctgat ggggaacata 781 cgtccagatt ccgggcactg cagggtgccc tctatcactt ccacctgcgg gcagggaggg 841 acagagctga gcactggcag cctcagtgcg ggaggcaggt ggcccgggaa gcaagtgatg 901 ggccgcttct cacctccagc agcaggtggt gcatggtcct cagaaactcc tcattctcct 961 catatccctc aaccggccct ttcggcacct ggatcagacg caactgtggg caagaggcca 1021 aaattatctc cgggcatccc gaactcccgc ctcagcccgg ctgaggtgtg cccgccccgc 1081 attccccggg atatgctggg gcggggtaag gatcctcacg ttatcggccg cctccaggaa 1141 cgccgaccac tccactttag gtatcatacg cgccacgaag ttggggttga attccacagg 1201 gcagatacgg acctcggtgg cctgcagggc ggaggagttt aggcaagcac tggaccccgg 1261 cccaccatcc cgcccgaaaa gggaagactg ccgccggcgg gtacctggag gcgcaggggg 1321 aagccacggg accccacccc ccgcacatgc gagctcagca gattgtgggt aagcagtttc 1381 atgtcgccgc acaaactctc gccaggccgg aaccggaaaa aggtcgtcct ccgctgcctc 1441 acttccgggg atgctccact cgatgctatt ggatagccag gagaaccgga agtggcgaac 1501 ttgctggaac ttctcgtgtt tgtgggagct gaggtaggta ggtgaaagac ctgtcgggtc 1561 acgcgccgct accggaagcg tctcagcagg aggttcctac ggcgcacgcc cagctttttt 1621 tttgccacaa attcttcgta agatgcaaat catatgcaaa atagctgcaa tgcaggagct 1681 ctcgttgaat gcaaaataaa cacattttac tcctacacag gcgcctaaca ccgtcgtcct 1741 ctgtatccca ctttcggtta aggggcagaa ataccgccct atctgtaaat taggcccatg 1801 gaagccgagc cgcacctcat tcctatatgc aaattagctg ctccagtgcc gaaagctccg 1861 ccccatttgt agttgcgtcg gctgtccagc acccagtgca aacgaggcgt gggtcccgga 1921 agctctgttc tgcgggtggc cgctcgcgcc tgcgcagtgg aggcggccca ggcccgcctt 1981 ccgcagggtg tcgccgctgt gccgctagcg gtgccccgcc tgctgcggtg gcaccagcca 2041 ggaggcggag tggaagtggc cgtggggcgg gtatgggact agctggcgtg tgcgccctga 2101 gacgctcagc gggctatata ctcgtcggtg gggccggcgg tcagtctgcg gcagcggcag 2161 caagacggtg cagtgaagga gagtgggcgt ctggcggggt ccgcagtttc agcagagccg 2221 ctgcagccat ggccccaatc aaggtgaccg ctggcccggc cgggcctgac atcccccact 2281 acccccatgg caatccccgt cccgctagtc tgagagtatc gccttatttc ctgcctgcca 2341 gacccctccc ctccgcccgc ccggctcatc ccttcagaag gccctcgtgg ctgcccacct 2401 ttctcgccaa tcgtgggggc ctcacctccc gggacagtcc cgaggcattg tgttttttgt 2461 tttttgtttt tttttgagac ggagtctttc tgtgtcgccc aggctggagt gcagtgacgc 2521 aatctctgct cactgcagcc tccgcctccc gggttcaagc gattctactg cctcagcctc 2581 ctgagtagct gggactacag atgcgagcca ccacgcccag ctattgtatt tttagtagag 2641 acgggatttc accccgttgt tcagattggt ctcgaactcc tgacctcagg tgaacccccc 2701 ccgccccccc ccgcctcggc ttcccgaagt gctaggatta caggtgtgag acaccactcc 2761 cggcctgatt tcccctatct tctgaaacag ctgtccctta gcgcccccgc gggggcttac 2821 cccatcccac tccatgacct cccctccccc catggcgaat tcccaccttt ctgtctttca 2881 ctcacttcct ggaaccgtcc ccagggcctt ggaccttccc ccttctcctc ccaaaccttg 2941 tgagacccca ttccctttct acttcatcct gctctcaacc tttgggctcc tcagaggccc 3001 tcacctctga ctctctctcc ctacccactc tggtcccatg aagccctcaa gtactctggg 3061 gatggatcct tcccccttca aaagattcct tcttttgttc tacacctcct gggtgtaggg 3121 gcctggacac cctcccccaa cgttccacct gccgctgccc ttcctcttcc tcctcctgag 3181 ggtgggaccc tcagacctgg ccaagatcct ctccctccat gttgtcaggg actcctcctc 3241 acccccaaat acagccctct agcccctgtc cattttattc cactcctttc ctgtaaccta 3301 gacagcatgt tatgcaaccc tttgcgacac atggggaaac cttccctccc tttctctgtt 3361 gtcaccaatg gccccttaag aggagcaggg ccaccttgaa acttggagga tatggggtaa 3421 cccagtggga gcgggcaggg agggcccttg gaaactgaca gggctggagt atcctgctgg 3481 gtttcagccc cggttcctgc aggcacagct gccaggctct ctgttcacct tcctgcctct 3541 ggtttgcccc ggctccctca ccccccttac cctggagtcc ttccttctag gtgggagatg 3601 ccatcccagc agtggaggtg tttgaagggg agccagggaa caaggtgaac ctggcagagc 3661 tgttcaaggg caagaagggt gtgctgtttg gagttcctgg ggccttcacc cctggatgtt 3721 ccaaggtgag gcccttcccc ttctgaagat caggacctgg gatcttttgt gttgctctta 3781 agtcctccac atagtcctga taggactcct aaaaagcatt tcagtgccat cacaaaacaa 3841 gtagagctgg gtagagctgg gcgcggtggc tcacgcctgt aatcccagca ctttgggagg 3901 ccaaggcggg tggatcacga ggtcaggagt tcaaaaccag tctggccaag atggtgaaac 3961 cctgtctcta ctaaaaatgc aaaaaaatca gccggacatg gtggcgggcg cctgtaatcc 4021 caggtactgg ggaggctgag gcagagaatt gcttgaaccc aggaggcgta ggttgcagtg 4081 agtggagatc gtgcctctgc agtccagcct gggtgaaaga gcgagactcc gtctcaaaat 4141 gaaaaaaaaa aaaaagaaaa caagtagaga ctgcaaaaag ggaacagtac caggaatgtt 4201 ggagaaaaac atactacaat taaatccaac acccctgttg gtcctgctaa atgacaggca 4261 ctgtggaagg tgcttgggac tcagataaat aagacataga tctgcccatg gaaagttcac 4321 gtctggacca taaggcatta ggtttcattc tgagcttcct agtggccaag gcaaaaagga 4381 aatagaatgg tttagacagc tctcattgtc tgatcaaagg tgttgaggca gagcactgag 4441 gagggcctgg agataaaggg tgggctgggg gtcagatgca gttatccctt tgccgaccct 4501 ttgttcccct tcctcagaca cacctgccag ggtttgtgga gcaggctgag gctctgaagg 4561 ccaagggagt ccaggtggtg gcctgtctga gtgttaatga tgcctttgtg actggcgagt 4621 ggggccgagc ccacaaggcg gaaggcaagg tgaggtgagg ggcctgcagg gagtcaggac 4681 caggtaggat attcttcttg tgacctttac tttctctgca ggttcggctc ctggctgatc 4741 ccactggggc ctttgggaag gtgagtgttc ccctgaccgc cacagggaca tggcagtgcg 4801 gggagcagtg ggggcccttg gcctcttcaa ggatttctga cacttttctc tgtctcttct 4861 taggagacag acttattact agatgattcg ctggtgtcca tctttgggaa tcgacgtctc 4921 aagaggtaaa agtggagagt cctctgtgga gagagtcctc tgtgggagag agtcctctgt 4981 gggagagagt cctctgtgga gagggtcctc tgtgggaaga gtcgtctgtg ggggagagtc 5041 ctctgtgtgg gagagtcgtc tgtggggaga gtcctgtgtg gggagagtcc tctgtggaga 5101 gagtcctctg tgggggagag tcctgtgtgg gggagagtcc tctgtgggga gagtcctctg 5161 tgtggagaga gtcctgtgtg ggagagagtc ctgtgtgggg agagtcttct gtaggggaga 5221 gtcctctggg gagagagtcc tgtgtggggg agagttctct gtggggagag tcctctgtgt 5281 ggagagagtc ctgtgtggtg gtgagtcctc tgtgggggag agtcctctgt ggggggagtc 5341 ctctctggag ttctcttggg cccctggctg ttcactgcct gtctccatgc ccagcctcca 5401 agcccaggct gatgcagctg gctgggcccc tctttccggc aggttctcca tggtggtaca 5461 ggatggcata gtgaaggccc tgaatgtgga accagatggc acaggcctca cctgcagcct 5521 ggcacccaat atcatctcac agctctgagg ccctgggcca gattacttcc tccacccctc 5581 cctatctcac ctgcccagcc ctgtgctggg gccctgcaat tggaatgttg gccagatttc 5641 tgcaataaac acttgtggtt tgcggccatc tccttggtta tgaatggctg tttcgctgag 5701 cgccaggcat tctggcatca tcacagactg ggtgagaatg gtgagggcgc agatgggctg 5761 aaagggagaa tgtagggggt cctgcttaat taagggggag ctagggaggg cctttcaagg 5821 gaagtttttt tttttttttt tttttgagac agtttcactc tgtcccctag gctggagtgc 5881 agtggcatga tctcggctca ccacaacctc tgcctcccag gttcaagcga ttttcctgcc 5941 tcagactccc cagtagatgg gattacaggt gtctgccacc acgcccgact aagtttttgt 6001 atttttggta gagacggggt ttcaccatgt tggccaggct ggtctcgaac tcctgacctc 6061 aggtgatcac ccgcctccac ctcccaaagt gctgggatta caggtgtgag ccactgtgcc 6121 cagccttgag gcaggtgtta ctgagcactg agaaggagcc agcaatctga agaggaaggg 6181 aagaagcgct ccccacagag gcagcacaga gggcgaggcc tggccgatgg catgtggcgc 6241 acagtgtggc ctttgtacct gctctctggg tgctgcctga tgccatttag tctggaaacc 6301 ccatggcggg aagcttggct cccagcattc ctgccggggc ccagccccac catcctttca 6361 gacttgaccc cctcctgggc acaccctcat cccaggaaga gctcaggtca ctttaggacc 6421 atctgatgga cagggagagg ggctctggca cagcacttgc tcattccagg agggctccct 6481 gggggaagag tctaggtgag ctgtggaggg gagaagatgc tggtgaggcc tgaccagtgg 6541 tggctgggtg tgaggggcct caagtgggga caccagcagg gtgtggggat gggggccatt 6601 gccacggcag gccctgctcc tgggcctctg ccccttggtg cagggaagcc acgcctgtga 6661 tggtgaggcc ccactgcgtg gagtctaggg ggcctctgtg ccctgcgcga tgctgcctgc 6721 ctgcccaccc caggtgtggt aacagccctc acaagaattg gtgaggtgtg gactgctgct 6781 gcctctcagc cacctacagg gagtccgcat tccatcaccg cgtggagctg ccctgccatg 6841 aaccacatca atacctggct cccaggcact tcctgcgtag tggtccccag gggtcagccc 6901 ccactgctga ctcaggcagg ccacactctt gagaggtcag ggagaaggtc aaagcagggc 6961 ctcatagagc aaatgaccct tgaggcagtg ggagtggcgc ctcaagtggg aggcggaggg 7021 aggcccatag ccctaggggt gagccccata gccctagggg tggagggtgg gacaatccca 7081 tgctgccgca gcaaggtggg tagcaggagt agggggggaa tgttggggac aagagaggat 7141 gcctggaggt cagtgggctc tctgaagctg atgagcagct tgccttccac cctacaggca 7201 ccttggccat gggctaccgt gtgcagcccc caagctggga ggctgggaga ggcaccagat 7261 gggcagcagg gagcaggacc catgatgaca gcaatgccca ggaggtggag gtggagatgt 7321 gttgggaggg agggtgcatc cagggagctg cttgctgaag gtggaggggc tgggtgcttg 7381 tggtcacgtc tgtgagaaca gacactcagt aggaggggag ccagcctccc tgcccagggt 7441 tgcaggtgct cagcctaccc gagtcgtgct gcccaccaac ctctgtcact gtggttctct 7501 cccacaacct gccacccctt caggggtccc aggtgggggc agggaaggag gctgactgca 7561 cctcgagctg ccctggtaaa ctgcctgcct ctcctctcct gccaaactcg ggggtacagt 7621 gttgtcctca tggacac //