LOCUS PRDX2 8427 bp DNA linear PRI 05-OCT-2005 DEFINITION Homo sapiens PRDX2 peroxiredoxin 2 (PRDX2) gene, complete cds. ACCESSION PRDX2 VERSION tmp KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 8427) AUTHORS Livingston,R.J., Rieder,M.J., Shaffer,T., Bertucci,C., Baier,C.N., Rajkumar,N., Willa,H.T.., Daniels,M., Downing,T.K., Stanaway,I.B., Nguyen,C.P., Gildersleeve,H., Cassidy,C.M., Johnson,E.J., Swanson,J.E., McFarland,I., Yool,B., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (05-OCT-2005) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..8427 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" repeat_region 3..136 /rpt_family="MIR" /rpt_type=dispersed repeat_region 340..516 /rpt_family="Alu" /rpt_type=dispersed repeat_region 550..642 /rpt_family="Alu" /rpt_type=dispersed repeat_region 643..791 /rpt_family="Alu" /rpt_type=dispersed variation 1041 /frequency="0.01" /replace="G" variation 1081 /frequency="0.06" /replace="G" variation 1090 /frequency="0.06" /replace="C" repeat_region 1197..1316 /rpt_family="MIR" /rpt_type=dispersed variation 1301 /frequency="0.01" /replace="A" variation 1710 /frequency="0.03" /replace="T" gene 1743..6802 /gene="PRDX2" mRNA join(1743..1883,2353..2464,2554..2707,3324..3446, 3634..3764,6457..6802) /gene="PRDX2" /product="prdx2" variation 2041 /gene="PRDX2" /frequency="0.23" /replace="G" variation 2337 /gene="PRDX2" /frequency="0.01" /replace="T" CDS join(2362..2464,2554..2707,3324..3446,3634..3764, 6457..6542) /gene="PRDX2" /codon_start=1 /product="PRDX2 peroxiredoxin 2" /translation="MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYP LDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIP LLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQ AFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN" variation 2511 /gene="PRDX2" /frequency="0.06" /replace="A" repeat_region 2709..2901 /rpt_family="MIR" /rpt_type=dispersed variation 2728 /gene="PRDX2" /frequency="0.01" /replace="A" variation 3012 /gene="PRDX2" /frequency="0.06" /replace="A" variation 3097 /gene="PRDX2" /frequency="0.24" /replace="T" variation 3152 /gene="PRDX2" /frequency="0.23" /replace="G" variation 3184 /gene="PRDX2" /frequency="0.01" /replace="" variation 3458 /gene="PRDX2" /frequency="0.06" /replace="A" variation 3712 /gene="PRDX2" /frequency="0.01" /replace="G" repeat_region 3964..4259 /rpt_family="Alu" /rpt_type=dispersed variation 3994 /gene="PRDX2" /frequency="0.01" /replace="G" variation 4206 /gene="PRDX2" /frequency="0.01" /replace="A" repeat_region 4272..4422 /rpt_family="Alu" /rpt_type=dispersed repeat_region 4425..4725 /rpt_family="Alu" /rpt_type=dispersed variation 4531 /gene="PRDX2" /frequency="0.12" /replace="T" misc_feature 4737..5622 /gene="PRDX2" /note="Region not scanned for variation" repeat_region 4806..4916 /rpt_family="Alu" /rpt_type=dispersed repeat_region 4973..5278 /rpt_family="Alu" /rpt_type=dispersed repeat_region 5279..5590 /rpt_family="Alu" /rpt_type=dispersed repeat_region 5664..5977 /rpt_family="Alu" /rpt_type=dispersed misc_feature 6002..6282 /gene="PRDX2" /note="Region not scanned for variation" repeat_region 6013..6301 /rpt_family="Alu" /rpt_type=dispersed variation 6346 /gene="PRDX2" /frequency="0.01" /replace="A" variation 7105 /frequency="0.02" /replace="T" variation 7182..7186 /frequency="0.12" /replace="" variation 7648 /frequency="0.05" /replace="G" variation 7667 /frequency="0.03" /replace="A" repeat_region 7699..7787 /rpt_family="L2" /rpt_type=dispersed misc_feature 7748..8057 /note="Region not scanned for variation" repeat_region 7790..8089 /rpt_family="Alu" /rpt_type=dispersed repeat_region 8099..8409 /rpt_family="Alu" /rpt_type=dispersed BASE COUNT 1990 a 2295 c 2286 g 1856 t ORIGIN 1 atttaatatt tccacgagtc tcaggtgggg aaaccaagac ccagagacag caagccaacc 61 ttccaagctc atatacgggg taagtgggcc agaggaacta caacctgaca cttccaggct 121 gtgccagcct gcccagttgt gagtgtccta caacatcctt ggtgcccgcc atttgaagct 181 gacttctgtc ttcaggggtg tgaccatggc cctacctaga aggcacaatg ccacctgaca 241 gcagggttgt caagtgataa atggcataat tgacataatg aaggtaagta aatctcccgg 301 tgctgtgcta gcatatacaa accaatttat tatgatcagt ttgtttattt atttaattta 361 tttattttga gacaagatct tgctctgtta cccaggttgg aatgcaaggg cataatcatg 421 gctcactgca gcttcaaact ccttggcaca aatggtcctc ctgtatcagc ctcttgagta 481 gctgggacta caggcgcatg ccaccatggc aggctaattt attttttatt tttatttatt 541 tatttatttt tgtagagtag ggggtctctc catgttgccc aggctggtct tgaattcctg 601 ggctcaagca gtcctcccgc ctcggcctcc caaagtgctg ggccatcaag tcaggctaat 661 tttaaaatat tttttgtaga gatggagtct tgctgtgtgg gccaggctgg tctggtctcc 721 gagaccaagg gatcctccca cctcagcctc ccaaagtgct aggattatag gcgtgagcta 781 ccgcgccggc cactgtgatc actttaaagg gctctttact gaatctgccc ctttccccta 841 tgagacagat cttatcccaa ctccgatctt atcccaactc accgctcacc aaggtctgac 901 acctcctacc ctcccacacc catgtctctg ccacacctca ccgacctctt tccatttctc 961 cttcaggact tttcaccttg gcatttgcta ttccctcttc cttggacatt ctttccccaa 1021 atctttccat atgggacttt cgcttgtcgt tctcgctgca ctggtcacgg gtcttctgca 1081 atcggaccct ctctgatttc ccaagcttgc ccgccccctt ctttctctgt ctctgccctt 1141 cctggcacct atccccgagt gacagcttca gtgtcctgcc cacaccctct cttcccctgg 1201 gagctgcttt aaagcagtat ctatttcaat atatccaaga gtaaaccgag ccttagagaa 1261 aagtaaccag cccaagggga cgcctccagt gcggagctgg gtggagattt gcagcccgcc 1321 gaggaaggtc cctttgcagc cagcaggaga agtagggcaa cggggagcct ttgggcatcg 1381 tcatccccgc cgcctgaggt taccctttag atgctgcagc ctcagctgct cccagctgtc 1441 accttcgccc tgctgcccta agtactgata gtcctggtag accagggcag gggtcgccag 1501 ctgcaggagt agcagaggcg ccagcagcag cgcccccggg gtccgcgcca tgctggactc 1561 caacggcccc caacgcgctc ccaggcggag tcgtgcgcgg agtctgcggc gggcgcatta 1621 cccacgcggg caggtgcagt ggtcccggcc gaaggcaacg cgtctccccc cgccgcccgc 1681 aggcgcatgg acccggccgc acgctccccc gcacctgcgg gcgcagtgga cccgaccgct 1741 ccgctcgtcc gctccctccc ccgcgccgtg cacgtcttgg ttcgggccgg gcataaaagg 1801 cttcgcggcc cagggctcac ttggcgctga gaacgcgggt ccacgcgtgt gatcgtccgt 1861 gcgtctagcc tttgcccacg caggtatgaa cacccggagt gcacctggcg ggaggacccc 1921 cttcaggctg ctttggcccg atcctgactt tagtgctggc cgcctttgct ttccatccgc 1981 tatagtggcc tcctttgtcc ttgcggggga aaccgaggcc acagccttgc agcgcaggcc 2041 tgatcgcccg acttcccgcc ccctgctcgt gcgggcctca ctgtctcctt ctgggctggg 2101 ggcttgcgac accgccctcc ggccgactcg ctcgtggggt gctggtggca gtggctgggt 2161 cactcgtgct ctggtcagga gagcgggtct ccggcagcct ccgggcctcg tagaccgggt 2221 acccgggagg gtgagggtta gtgctgtcgc ctccgccgtg ctgactcagt catagggccc 2281 agcacgcagc gcgaccttgg gttgggagga caaagtgtct tcccgggcgc actgaccggg 2341 cgggggtctc agctttcagt catggcctcc ggtaacgcgc gcatcggaaa gccagcccct 2401 gacttcaagg ccacagcggt ggttgatggc gccttcaaag aggtgaagct gtcggactac 2461 aaaggtgagc gccgcccgga gggggcccag gtagaagcgg ggccgtgcat gagagaagct 2521 gggccctaac tcctctgtgt ccctcctccc cagggaagta cgtggtcctc tttttctacc 2581 ctctggactt cacttttgtg tgccccaccg agatcatcgc gttcagcaac cgtgcagagg 2641 acttccgcaa gctgggctgt gaagtgctgg gcgtctcggt ggactctcag ttcacccacc 2701 tggcttggta tgagcagggg ccaaagaggg aggttgcagc taagctcaca ccctcaggtc 2761 ctagcagtgt ggcttcgtgg ccattgctca acctctggaa cctgcgtttc cccatcgtga 2821 aaataatgga aacattgccg cccaagtctt taaggatgat gacagtaatt agcatttgac 2881 aactagttgc ctggtatata gagttgcaga tgcaactcag atgcaactct atctactcta 2941 tgtacttagt tcccaggagg gaggctgtgc tgccctattt catgaagatg gaaactccag 3001 ttcaccgaag tgaagggctg taccccatga cacagctaga ggaggatggg gactcttaac 3061 acaggctctc tgctgggtga tgctgcaagt tacaagcaca tgtgaagcca cttagctgga 3121 gctgtgcctc tcaaactcag tcttcccagc catggggata cagtccttgc acccaaccca 3181 gggtggggtg ggtgaggctc ccagcggcct actctaaagc cccttatctc cggcctccag 3241 tgcttatcac attgggccca cagggtgagg accctgctgt gccaggcatc ctgaggcccc 3301 aactctgtct cccctactcc caggatcaac accccccgga aagagggagg cttgggcccc 3361 ctgaacatcc ccctgcttgc tgacgtgacc agacgcttgt ctgaggatta cggcgtgctg 3421 aaaacagatg agggcattgc ctacaggtac tgtgggaccc tcagcccggc tcagggagcg 3481 ccctgccccc cattcctgtg atgctgggac cactcctgta caatgtcttc tctgccccca 3541 gccctgtggc tagcagcggg tggttggtag tcccttcctt gtctctggca gtgggagcta 3601 tcagctcctc actgggaacc ctgatgtctt caggggcctc tttatcatcg atggcaaggg 3661 tgtccttcgc cagatcactg ttaatgattt gcctgtggga cgctccgtgg atgaggctct 3721 gcggctggtc caggccttcc agtacacaga cgagcatggg gaaggtgagc agatacacac 3781 atgacacatg ggtacatact gagcgcctcc gtcactcatg caaacattca ctgcctgtcc 3841 tcttacctgt ccagatgggt gttagggccc caaagaagat tcagctcagg gctttgtctg 3901 caggatgttt ctaatgtggt aggagacaaa taacgcctga cattcaacca aggtggacaa 3961 aggggccggg ctcagtggct cacggttgta ttgccagcac tttgggaagc tgtggcaggt 4021 ggatcacctg aggtcaggag ttcgagacca gcctgaccaa catggtgaaa ccccgtctct 4081 acgaagaaca caaaaaatta gctggccgtg gtggtgcaca cttgtaatcc cagctacttg 4141 agagactgag gcaggagttc gcttgaaccc aggaggcaga ggttgcagtg agctgagatc 4201 gcaccgttgt actccagctt gggcaacaga gcaaaactca gtctcaaaaa aaaaaaaaat 4261 tagcttggtt tgtgaagcat gcctatagtc ccagctactc aagaggctga ggctggagga 4321 tcacttgagc ctgggaggtc aaggctgcag taagctgtga tcgcaccact gcactccagc 4381 ctgggtgaca cagcaagacc ctgtctcaaa aaaacaaaca aacaggccga gcgcggtggc 4441 tcacgcctgt aatcccagca ctttgggagg ccgaggcggg cagatcatga ggtcaggagt 4501 ttgagaccag cctggccaac atagtgaaac cgcgtctctg ctaaaaatac aaaaaaatta 4561 gctgggtgcg gtggcaggtg cctgtaatcc cagctacttg ggaggctgag gcaggagact 4621 cccttgaacc cgggaggagg ttgcagtaag ccgagatcac accactgcac tccagcctgg 4681 gcgccagtgt gagactccat ctcaaaaaca acaacaacaa aaaaacctgt aggggtgggg 4741 cagagggaca aagatgggac taaaggagcc aaaaagacag gaagatgctg tgtctcatgc 4801 ctgtagatgc tgtgtctcat gcctgtagtt ccacctactc tggagagtga ggcagaagat 4861 tgcttaggcc caggaatttg agtcgagcct aggcaacata gcaatacccc atctcttttt 4921 tttttttttt aagagatggg gtattggtta aaaaaaaaaa aaaaaaaaaa gaggccagat 4981 gcagtggctc acacctgtaa tcccagcatt ttgggaggcc taggtgggtg gatcacctga 5041 ggtcgggagt tcgagacaag cttgaccgac atggagaaac ccagtctcta ctaaaaatac 5101 aaaattagcc cagcctggtg gtgcatgcct gtaatcccag ctacttggga ggctgaggca 5161 agagaatcgt ttgaagctga gaggcggagg ttgcagtgag ctgagatcgt gccattgcac 5221 tccagcctgg gcaacgagtg aagcgaaact ccgtctcaaa aaataaaaaa aaaaaagagg 5281 ccgggcacgg tggctcatgc ctgtaatccc accactttgg gaggctgagg cgggcggatc 5341 aagaggtcag gagatcgaga ccatcctagc taacgcggtg aaaccctgtc tctactaaaa 5401 atacaaaaaa attagtcggg cgtggtggcg ggcgcctgta gtcccagcta ctctggcggc 5461 tgaggtagga gaatggcgtg aacctgggag gcggagcttg cagtgagcag agatcgtgcc 5521 actgcactcc agcctgggca acagagcaag actccatctt aaaaaaaaag aaaagaaaaa 5581 aagaagaaaa aggagagctg ggtggcaaaa agaaattgaa gaattaagag taggaaaaac 5641 accagctaga aaatactgaa cttggccagg tgtagtggct cacgcctgta atcctagcat 5701 tttgggaggc caaggtgggt ggatcacctg aagtcaggag ttcgagatca gcctgaccaa 5761 tatggtgaaa ccctgtctct gctaaaagta ccaaaaaatt agcagggtgt ggtggcgggc 5821 acttgtagtc ccagctactc aggaggctaa ggcaggagaa tcacttgaac gcgggaggca 5881 gaggttgcaa tgagccgaga tcacgccatt gcactccagc ctgggcaaca gaggaggact 5941 ctgtctcaaa aaaaaaaaaa aaaaaagaaa gaaagaaaaa agaagaaaag aaaaagagaa 6001 aatactgaac ttggctaggc atggtggctc acacctgtaa tcccagcact ttgggaggcc 6061 aagacgggca gatgacttga ggtcaggagt tcgagacaag cgtgactaac atggtctcta 6121 ccaaaaatac aaaaattagc caggcgtggt ggtgcacctc tgtaattcca gctagggagt 6181 ctggggcatg agaatcgctt gaacccagga gggagaggtt gcatgagctc agatcatgct 6241 actgtacttc agcctgggca acagagcaag actctgtctg aaaaaaaaaa aaaagaaaaa 6301 atactgaact gggcttggag ggtttatctt aatatccaca ttcctgggcc tggaccactt 6361 gcttccagca ttttcttctg caacacaggc ccttgctttg cttcaccttg aacctggggc 6421 tgtagccttc atgtgcatcc ttgtgtcttc ccacagtttg tcccgctggc tggaagcctg 6481 gcagtgacac gattaagccc aacgtggatg acagcaagga atatttctcc aaacacaatt 6541 aggctggcta acggatagtg agcttgtgcc cctgcctagg tgcctgtgct gggtgtccac 6601 ctgtgccccc acctgggtgc cctatgctga cccaggaaag gccagacctg cccctccaaa 6661 ctccacagta tgggaccctg gagggctagg ccaaggcctt ctcatgcctc cacctagaag 6721 ctgaatagtg acgccctccc ccaagcccac ccagccgcac acaggcctag aggtaaccaa 6781 taaagtatta gggaaaggtg tgagtctgtg ttggtgtgct ctgtcctttc gtcctcccct 6841 gcaaccccct tccttcttca ggctcaggct tgggaaactg accctgtggt tgctcatctt 6901 cgccacacgg tggcggtctt atcacatgct tagtgcctgc tcttttcctg cttgcgctca 6961 aggcggtttc ggaggggtag ggtatgccgt ttgtcccttg caaatcccag gatgccctac 7021 atccagaaat ctggccatgc aaggcaaagc ccacattttg tcaccagcca gcctgggttc 7081 aaatgccgtt taagagctgt gatcgtctct gggtctcttc agcagtaaaa tgggactgca 7141 aacccagatc accatgcacg tggtaaaatt tgtaggagat aagttatgtg aagctcgggg 7201 ctgaggcccc tgtgtagggc ccagttccta gttcctaaga cggcttcctc gagctgaaag 7261 gaacccagcc cagtgtagtc ttatggggaa gagggtgggg acccagtctt aagagcagaa 7321 ccaagaatga gagcctgagc tacgtgcaga gtgcagagtc cctgctgtga gctctgcccc 7381 accccaggct ggaaaggttg cctgtctgcc cctggggtgg gagggtggca gttaggctag 7441 aaggcaggta ttagcagcaa ggcagggttc ccaggggtgc agtttaatat tgtgtgcgtt 7501 caggaaagta gttttgctac tctatgcccc aatttcctcc tacagaacag ggctaatatg 7561 ctcatttaat ccacagatcc actattaatg ctggtaccca cctaataccc tctaagggtc 7621 actcatctcc cttggaattt aatctacact cctccccaag gcccctgctc agtctccctt 7681 gacatctgcc ctgttgtggt tcactccatt ccagacaggc tggcttcctg ctgttctttc 7741 acaggctcac ctggctacat gaattttgcc atttaagagc tgctcccaag gccgggcgca 7801 gtggctcacg cctgtaatcc cagcactttg ggaggccgag acgggcggat cacgaggtca 7861 ggacatcgag accatcctgg ctaatacagt gaaaccccct ctctactaaa aatacaaaaa 7921 attagccagg catgttggca ggtgcctgta gtcccagcta cttgggaggc tgaggcagga 7981 gaatggcgtg aacccgggag gcagagcttg cagtgagccg agatcgtgcc actgcactct 8041 agcctgggca acagagcgag actccgtctc aaaaaaaaaa aaaaaaaaag ctgctcccag 8101 ttgagcgggg tggctcaggc ctgtaatccc agcactttgg gaggcccagg caggcggatc 8161 acctgaggtc aggggttcga gaccagcctg gccaacatgg tgaaaccctg tttctactaa 8221 aaatacaaaa attagcctgg catggtgatg cacgcctgta gacccagcta cttgggaggc 8281 caagcaggag aatcgcttga atcctgtggg tggaggttgc ggtaaactga gatcgagcca 8341 ctgcactcca gcctgcctgg gtgacagagg gagactccat ctaaaaaaca caaacaaaca 8401 aacaaaaaac tgttacctct gatgctg //