LOCUS PLA2G1B 8368 bp DNA linear PRI 16-OCT-2003 DEFINITION Homo sapiens phospholipase A2, group IB (pancreas) (PLA2G1B) gene, complete cds. ACCESSION PLA2G1B VERSION KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 8368) AUTHORS Rieder,M.J., Livingston,R.J., Daniels,M.R., Chung,M.-W., Miyamoto,K.E., Nguyen,C.P., Nguyen,D.A., Poel,C.L., Robertson,P.D., Schackwitz,W.S., Sherwood,J.K., Witrak,L.A. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (16-OCT-2003) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..8368 /organism="Homo sapiens" /db_xref="taxon:9606" repeat_region 101..257 /rpt_family="MIR" /rpt_type=dispersed variation 205 /frequency="0.01" /replace="A" variation 306 /frequency="0.01" /replace="A" repeat_region 326..538 /rpt_family="Alu" /rpt_type=dispersed misc_feature 354..496 /note="Region not scanned for variation" gene 875..6548 /gene="PLA2G1B" mRNA join(875..944,2644..2803,3603..3730,6347..6548) /gene="PLA2G1B" /product="PLA2G1B" CDS join(911..944,2644..2803,3603..3730,6347..6471) /gene="PLA2G1B" /codon_start=1 /product="phospholipase A2, group IB (pancreas)" /translation="MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEY NNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGS AITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS" repeat_region 1174..1307 /rpt_family="Alu" /rpt_type=dispersed variation 1286 /gene="PLA2G1B" /frequency="0.01" /replace="G" repeat_region 1319..1588 /rpt_family="Alu" /rpt_type=dispersed variation 1343 /gene="PLA2G1B" /frequency="0.03" /replace="A" variation 1593 /gene="PLA2G1B" /frequency="0.02" /replace="T" repeat_region 1605..1669 /rpt_family="L2" /rpt_type=dispersed misc_feature 1638..2188 /gene="PLA2G1B" /note="Region not scanned for variation" repeat_region 1670..1975 /rpt_family="Alu" /rpt_type=dispersed repeat_region 1976..2038 /rpt_family="L2" /rpt_type=dispersed repeat_region 2086..2165 /rpt_family="L2" /rpt_type=dispersed repeat_region 2194..2319 /rpt_family="Alu" /rpt_type=dispersed misc_feature 2319..2453 /gene="PLA2G1B" /note="Region not scanned for variation" variation 3027 /gene="PLA2G1B" /frequency="0.25" /replace="T" repeat_region 3165..3431 /rpt_family="Alu" /rpt_type=dispersed variation 3262 /gene="PLA2G1B" /frequency="0.01" /replace="T" variation 3321 /gene="PLA2G1B" /frequency="0.01" /replace="A" variation 3396 /gene="PLA2G1B" /frequency="0.03" /replace="G" variation 3630 /gene="PLA2G1B" /frequency="0.10" /replace="C" variation 3702 /gene="PLA2G1B" /frequency="0.15" /replace="A" variation 3768 /gene="PLA2G1B" /frequency="0.01" /replace="T" variation 3818 /gene="PLA2G1B" /frequency="0.01" /replace="A" repeat_region 3846..3964 /rpt_family="MIR" /rpt_type=dispersed repeat_region 3977..4280 /rpt_family="Alu" /rpt_type=dispersed repeat_region 4281..4346 /rpt_family="L2" /rpt_type=dispersed repeat_region 4347..4634 /rpt_family="Alu" /rpt_type=dispersed variation 4386 /gene="PLA2G1B" /frequency="0.08" /replace="T" repeat_region 4635..4723 /rpt_family="L2" /rpt_type=dispersed variation 5013 /gene="PLA2G1B" /frequency="0.10" /replace="A" repeat_region 5103..5404 /rpt_family="Alu" /rpt_type=dispersed variation 5133 /gene="PLA2G1B" /frequency="0.01" /replace="C" variation 5543 /gene="PLA2G1B" /frequency="0.01" /replace="C" variation 5555 /gene="PLA2G1B" /frequency="0.01" /replace="T" variation 5556 /gene="PLA2G1B" /frequency="0.15" /replace="G" repeat_region 5577..5629 /rpt_family="L1" /rpt_type=dispersed variation 5580 /gene="PLA2G1B" /frequency="0.09" /replace="G" variation 5675 /gene="PLA2G1B" /frequency="0.09" /replace="G" repeat_region 5779..6083 /rpt_family="Alu" /rpt_type=dispersed variation 5929 /gene="PLA2G1B" /frequency="0.01" /replace="A" variation 5949 /gene="PLA2G1B" /frequency="0.01" /replace="G" variation 6039 /gene="PLA2G1B" /frequency="0.01" /replace="A" variation 6082 /gene="PLA2G1B" /frequency="0.14" /replace="T" repeat_region 6085..6235 /rpt_family="DNA" /rpt_type=dispersed variation 6121 /gene="PLA2G1B" /frequency="0.01" /replace="G" variation 6227 /gene="PLA2G1B" /frequency="0.01" /replace="G" variation 6538 /gene="PLA2G1B" /frequency="0.01" /replace="C" repeat_region 6605..6912 /rpt_family="Alu" /rpt_type=dispersed variation 6871 /frequency="0.02" /replace="A" variation 6916 /frequency="0.01" /replace="T" repeat_region 7075..7241 /rpt_family="MIR" /rpt_type=dispersed repeat_region 7349..7651 /rpt_family="Alu" /rpt_type=dispersed variation 7533 /frequency="0.13" /replace="T" variation 7551 /frequency="0.02" /replace="G" repeat_region 7739..7887 /rpt_family="Alu" /rpt_type=dispersed variation 7872 /frequency="0.02" /replace="C" repeat_region 7888..8008 /rpt_family="Alu" /rpt_type=dispersed repeat_region 8067..8302 /rpt_family="MIR" /rpt_type=dispersed BASE COUNT 2210 a 2045 c 1771 g 2342 t ORIGIN 1 ctctgatatg acagttctaa tgccctttag tattctataa ttcagactca ggcctttgga 61 atccaaagcc caggtttttc tcacaaaccc acactgcaga gcggagtggt ggaaaaaaat 121 aaaacctctg ccttggaatc agacagatct aaactggagc cctattttgt catttgccaa 181 ctgtgtgacc ttgggcaagt taccgcaact ctctgaacct gtctctttat ctgcaaggtg 241 cacgactgat gggactattc aaccagaccc agtgcacaga ttcaggcact tgataagaca 301 ttgaggctgc aggcagcgat cttttttctt tctttctttt tttttttttt tttttgaaat 361 agggtctcac tctgctgcag aggctcaatc actgttcatt gcagccttga cctccctggc 421 tcaagagatc ctcccatctc agcctcctga gttgctggga tcacaggtgc aatccaccac 481 cacacctggt taacattttt ttttttagag atgaggtctc tctatgttgc ccaggctgca 541 cttccttctt gtctccctta tcccagcgtc cgactgaact gacggctttg ctttccccaa 601 ccagcccgtg aagctgggct gagtacaaag tggtgggtat gagggtcaag attgtaagat 661 ctgaaaactc cagaaaccat ccctttggtt aacagttgct aaggacaaat gcataacata 721 ttttccagtg atcccatgct ggcaaatcgt cagggtcatt cctgcaacag acagattcaa 781 ggccagcccc aaactcagcc aagagcaaag caaacactcc agccttatct gggcagggtt 841 gtgtggagac tgactataag actatacctg agactggtca tctcagttct tttctcacct 901 tgactgcaag atgaaactcc ttgtgctagc tgtgctgctc acaggtaggc aagtctcccc 961 ggctccaccc gcctttctct cccaagtgag ctaagatctc actcctctgg aatgggggcc 1021 acaggccaca gcaaacaggg atggccagcc ccgcagtctc aattcgaggt tcccagtggg 1081 gcttaagggc tcctctattg gggttccctc aaggctggca ctttttcaac ctgcaagtct 1141 gaactcagat tgcctgagct aagaaagctt gcctttattt tcttttttcc agacagggtc 1201 ttgctctatc acccaggctg gagttcagtg gcatgatcat agctcaccac agcttccaac 1261 tcgtgggctc aagtgatcct cccaccttac tcaactaagt agttaggcca atctcccatt 1321 tattttattt tattttaatt tttattttta ttttacttta ttttattttt gagacggggc 1381 tcactctgtc gcccaggctg gagtgcggtg gcgtgatctc agatcactac aacctccatc 1441 tcctgggttc aaataattct cttgcctcag cctctcaagt agctgggact tgtagctctc 1501 aagtagctgg cacacaccac catgcccagc taattttttg tgtgtttttt ttggtagaga 1561 caggttttca ccatgttggc caggctgggt gacctccctt ttagattctc ctcatcctgc 1621 tctattcttc ccctttctaa tgcagtatcc agtttcctta cttatcacat ttattattat 1681 tcttattatt attgagacag agtcttgctt tgtcgccaag gctggagtac agtggtgcga 1741 tctcggctca ctgcaagctc cacctgctgg gttcacgcca ttctcccgcc tcagcctccc 1801 cagtagctgg gactaaaggc gcctgccacc acgccccgct aatttttttg tatttttaat 1861 aaagacgggg tttcatcgtg ttagccagga tggtctcgat ctcatgacct tgtgatccgc 1921 ctgcctcggc ctcccaaagt gctgggatta caggcatgag ccaccgtgcc cggccttatc 1981 acatttatta tttattgttt ttctctccca ctaggttgta agctccatga ggttagagat 2041 tattattatt attattatta ttattattat tattattatt attatatctg ttcactgctg 2101 tatctctagc tcctaggaca gagcctggca catagtaagt gctcaataaa tattcactgg 2161 ataaacagtg cagatagttt aaaactatct gacctaggga ggctgaggca ggagaatggc 2221 gtgaacccgg gaagcagagt ttgcagtgag ctgaaatcgt gtcactgcac tccaacctgg 2281 gcaacagagc aagactccat ctcaaaaaaa aaaaaaaaac tatcaggcct agctgggtgg 2341 cacatgcctg taatcctagc tgaggcggta gggtcccaga agaagaagaa gaagaaaaag 2401 aagaagatat atatatatat acacacacac aaagatataa actttatata tataaagttt 2461 tcattaaaaa aaaaaaaaaa cctctaccca ctttcacttt accaggttcc tgggtccaac 2521 ggtcttcaga ggaggcagct ggcaggggtc agggaggcag cgtgggaccc gagggagcag 2581 gaaggcagtg tgtccccggg gtgctggcag accgatttga actctggcta tgtcttcttg 2641 cagtggccgc cgccgacagc ggcatcagcc ctcgggccgt gtggcagttc cgcaaaatga 2701 tcaagtgcgt gatcccgggg agtgacccct tcttggaata caacaactac ggctgctact 2761 gtggcttggg gggctcaggc acccccgtgg atgaactgga caagtaagtg atccgcctgc 2821 aggaaaattg gagtgcctgc cgggggcggg gtggggcaca cgccaaggat ctcacgaggc 2881 atacaaaggg gacttgcata tctgctaagg ataacatatt ttcacctctt gtcaaataaa 2941 caaatatgtt ccaagaggac cctgtagcga acgcaccccg ttagagatgg aaacaatgac 3001 cgacgtgcaa aacagtgggc gatgctgccc tccagtggca gaatgtagca acagtaaaca 3061 tcacagcaac tatccacgtg tcattttcta gcagtggttg tcactgcacc ttctgaatac 3121 aggattttac tgtattcttg caaccatgtt aaaaatcgct ttcaggccag gcgcggtggc 3181 tcatgcctgt aatcccagca ctttgggagg ccgaggcggg cggatcactt gaggtcagga 3241 gttcgagacc agcctggcca acatggtgaa accctgtctc tactaaaaaa tacaaaaatt 3301 agccggacat ggtggcgagc gcctgtaacc ccagctactt gggagactga gttggaggtt 3361 tcagtgagcc aaggtcgtgt cactgctgtc cagcctgggt aacagagcaa ctctgtctca 3421 aaaaaaaaaa atgctttcaa taaatatatg ataaaaggac ttatattttt tcaagccata 3481 ggatcatttc tcctgaagca tcttggcgaa gtcatcccca cctgttcctg agagtgggca 3541 ggtgagggct gacctattgc tctgcactta ctcctatctc agctgtccct cccactttcc 3601 aggtgctgcc agacacatga caactgctat gaccaggcca agaagctgga cagctgtaaa 3661 tttctgctgg acaacccgta cacccacacc tattcatact cgtgctctgg ctcggcaatc 3721 acctgtagca gtaggtttat cccttccttg acctatgaat tctagttggt tctcagtagg 3781 ccggggggaa ataatagtaa caacagccat gatttagtgt taattttctt ggttctgggc 3841 agtgtctcct ttaatcctca gaacaacact atgggatagg tacaattatc ctcacttaac 3901 agataagaaa actgaggctc agaaggctga gctatttgcc caagatcaca cagcttgtaa 3961 gtggtgacag tttgggtttt tttttgttgt tgtttagaga cagggtcttg ctctgtcacc 4021 caggcatgag cacagtggtg caaccatagg tcactgcagc ctcaacctcc tgagctcaag 4081 ggatctgctg acctcagcct cccaagtagc tgggactacg agcgtgcacc accacgcctg 4141 gctaattaaa aaaatttttt tgtagagact gggtcttact acgttggcca ggcttgtctt 4201 aaactcctgg cttcaagcaa tcctcctacc ttggcatccc aaagtgctgg gattacaggg 4261 gtgagccacc atgtgcggct acttatttct ttacattcca tctttccaat agaatgtaag 4321 atccacagaa cagggattac tgcctatttt cttcctttct tttttgagac agagtctcac 4381 ttcatcacct caacctccgt tcagctcact gcaacctctg cctcccgggt tcaagcgatt 4441 ctcctgccta agcctcctga gtagctggaa ttacaagcgt gcaccaccat gcttggctaa 4501 ttttttgtat ttttagcaga gatggggttt taccatgttg cccaggctgg tctcaaactc 4561 ctgacctcaa gtgatctgcc tgcctcagtc tcccaaagtg ctggaattat aggcgtgagt 4621 cactgtgcct ggccgattac tgtctatttt ctttattgct atatccccag atctagagca 4681 gtgtctgaca tatagtaggt gctcaataaa taattgatga atgcacagcc tagatataaa 4741 ctttcttttt ctttttttaa aacaatcttg acaactttgc agaataaata caatcttgca 4801 ttctgctttt tcacttatca ccttgttatg actttttcat attgcctcaa acctttattg 4861 ttactgtttt ttcattgtta ctattttagt cactgaataa tatggcttaa tttgcttata 4921 catcctcctg ctccacttta gaaggccaaa tttacaaatc tgatgaaagc tatgaaccct 4981 ctccccagag aaatacacac acacacacac actcacacac agtttttttt taatgtttgc 5041 aactaagaca agaaacctgc attagaggat gtttgttcat attaattaaa aataactcag 5101 ttgggcacag tgactcaagc ctgtaaccac agtactttgg aagtccaagg tgggtggatc 5161 acttgaggtg agaagttcga gaccagcctg gtcaatatgg tgaaacccta tctctactaa 5221 aaatacaaaa attagctggg tgtagtgatg catgcctgta gtcccagcta ctcgggaggc 5281 tgaggcaaga gaattgcttg aacctgggag gcagaggttg cagtgagccg agatcccacc 5341 actgcactcc agcctgggcg acacagcgag actctatctc aaaaaaataa ataaataaaa 5401 taaaggatcg gagagaaaca aaactaataa gattcctgaa ggtaagcaga gatacgtaaa 5461 ttatatgtaa taaagtttaa atgcatttta actgtaatct tattgtttat tttggttata 5521 aaagtaaaca agccaaaagt aatgcaactt caaactctac ataaatatct attatggaaa 5581 gtggaaggca tctataatcc tactacccaa agataaccag ttacatattc ctccagattt 5641 ttggggcata cactagcttt ttttatttgg gaaaatttcc atgtgcaggc atacctaatt 5701 tttctaaatg tctatgtagt attccattta aggatgttcc ataattttta aaatacatgc 5761 tttaaagtag agaaactagg ttgggcatgg tggctcacgc ctgtatccca gcactttggg 5821 aggccgaggc aaatggatca cttgaggtcc ggagtttgag accagcctgg acaacatgat 5881 gaaacaccct ctctaataaa aatacaaaaa ttagctgggc atggtggcga gcacctgtag 5941 tcccagctac tcaggagtct gaggcaggag tatcacttga actcaggagg cagaagttgc 6001 agtgagctga gatcacgcca ctgcactcca gcctaggcga caaaagggaa actccgtctt 6061 aaaaacaaaa caaaacaaaa aaacacagga tgcccagata aatatgactt tcagataagc 6121 aatggataat tttttggggg gtatatgtcc caaatattgc attcattgtt tatctgaaag 6181 tcaaatttaa ctgggcatcc tgatgtactt gtattcactt aatctgtcag ccctaaatgt 6241 gcatcagtgg aatggctgcc agcttattcc agttaattct tcttgcccca gattgtacaa 6301 aacagggtcc accttggctc agtcctctcc tttcatccct ctccaggcaa aaacaaagag 6361 tgtgaggcct tcatttgcaa ctgcgaccgc aacgctgcca tctgcttttc aaaagctcca 6421 tataacaagg cacacaagaa cctggacacc aagaagtatt gtcagagttg aatatcacct 6481 ctcaaaagca tcacctctat ctgcctcatc tcacactgta ctctccaata aagcaccttg 6541 ttgaaagacc tcatgtttgg atattgtttt attctctgtc tataaactag gtctctgcct 6601 actcttttat ttttatgtat ttattttttc taggtggagt cttgctctgt ggcccaggct 6661 ggagtgcagt gatgccacct tgcctcactg caacctccgc ctcccgggct caagcaatcc 6721 tcccgcctca tcctcccgag tagctgggac cataggcatg caccaccatg cctggctaat 6781 ttttgtattt tttgtagaga cagagtttcg ccatgttgcc ctggctggtc tcaaactcct 6841 cagcttaagt gatctgcctg gctcggcctc gcaaagtgtt gggattacat gcatgagccg 6901 ccgcgcctgg ctactctgcc tagtcttttg tgagtatcat ttcttccagc cttggaagct 6961 aagttgaatt agaaagacac ttccaggaag caagcaagca ccttgaaacc tgagtaatga 7021 ttaacgatca ccatctactg attatttact ctgtaccagg actgtgtgtc cataaatcct 7081 cttgacagcc ctgtgaggta ttggcgctat tagcaaatct tattttccta agctgaggct 7141 caataggaga ggtcactttt ccaatgctat catctagtaa gcagcagaga aggaatttga 7201 actcggcaag tctaacaaca gaaaacacat gctgaaccac tgcccttccc tgcctgaagt 7261 ggtaggcttt agtttgagcc agaccttgcc cccgtctcat gattctgcct ccattttcaa 7321 ctgtattaaa ccatttttct acaatgactt tctttttttt tttttttttt gagatggagt 7381 ctcgctctgt cgcccaggct ggagtgcagt gctgcaatct cggctcactg caagctctgc 7441 ctcccaggtt cacgccattc tcctgcctca gcttcccgag tagctgggtt tacaggctcc 7501 tgccaccacg cccagctaat tttttgtatt ttcagtagag acggggtttc accgtgttag 7561 ccaggatggt ctcgatctcc tgacctcgtg atccgcccgc ctcggcctcc caaagtgctg 7621 ggattacagg cgtgagccac cgcacacggc cacgactttc ttttctaaat aaaagacttc 7681 accacactct acaggctaat tttgacactg tagtcatgaa atataataaa cattaacaag 7741 ccgagcatgg cggcacgcgc ctatgatcgt agctactcaa gaggctgagg caggaggatc 7801 tcttgatccc gggagtttga ggctgcagtg agctatgatc acaccactgc actccagcct 7861 gggtgaaaga gtgagaccct gtttcaagct actagggagg ctgaagtgga aggatcccct 7921 gagcccagga gttggaggct gcagtgagct gtgatcacgc cactgcactc cagcctgagt 7981 gacagagaga gacactatct caaacaaaca cacacacaaa acacaaacaa aacaaaacaa 8041 aacaaaacaa aacaaaacaa aaaaccaata acagcttgca tttctggagc acttactgca 8101 tacttccttg ttcggagttt tccacatctc atctcattaa atgttcaaac cagctctgtg 8161 atattgatat ttttgctccc atttcatgga tgtggaacta aaaattcaga gaagttaagt 8221 catttgtcca agatcacaca aatggcaaaa tcaggatttg gccaggtctg tctggtggca 8281 gtgcccaagc ttttaaccac taagtcactt cagcccaatt cctctatgag tatttatgac 8341 tacatttaca ttgaaattca ccagaact //