************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /net/nickerson/lims/bin/phase/PHASE2 -d1 pemtx.phase.inp pemtx.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST pemtx.phase.out_freqs : haplotype frequency estimates pemtx.phase.out_pairs : most likely haplotype pairs for each individual pemtx.phase.out_recom : estimates of recombination parameters pemtx.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 95 Number of Loci: 54 Positions of loci: 528 1762 2303 3046 15844 16123 16131 16793 17440 17543 17885 17928 17966 18934 70115 70192 70310 70461 70688 70802 71040 71250 71317 71820 71986 72016 73036 73711 73923 73965 74868 75132 76101 76120 76168 76981 77725 77887 79150 81102 81480 82036 83008 84287 85108 85798 85813 86267 86760 86919 87621 87836 88504 89129 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file pemtx.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 CIACACTTCGAAGGDAGGGTAAGCTGACAACCCCGCC 3 TATCGGGTACGCCAGA 1.000000 2 CIACACTTCGAAGGDAGGGTGGGCTGACCGTGCCGGT 3 TATCGGGTACGCCAGA 1.000000 3 CIACACTTCGAAGGDAAGGTGGACTGATAGCCACACT 3 AATAGGATACATTAAG 1.000000 4 CIACACTTCGAAGGITGAGTGGGCTGATAGCGCCGGC 1 AATAGGGTACGCCGGA 1.000000 5 CIACACTTCGAAGGITGAGTGGGCTGATAGCGCCGGC 3 AATAGGGTACATTAAG 1.000000 6 CIACACTTCGAAGGITGAGTGGGCTGATAGCGCCGGC 3 AATAGGGTACGCCGGA 2.000000 7 CIACACTTCGAAGGITGAGTGGGCTGATAGCGCCGGC 3 AGTAGGATACATTAAG 1.000000 8 CIACACTTCTAAGGDAGGGCGGGCTGCTAGCCCCGCC 2 AAAAGGGTACGCCGGA 1.000000 9 CIACACTCCGAGAGITGAGTGGGGTGACCGCCCCGGC 3 AATAGGGTGCGCCGGA 1.000000 10 CIACACTCCGAGAGITGAGTGGGGTGATAGCGCCGGT 3 AATAGGGTACGCCAGA 1.000000 11 CIACACCTCTAAGGDAAGGTGGACTGATAGCCACACC 3 AATAGGATACATTAAG 1.000000 12 CIACATTTAGAGAADAAGGTGGACTGATAGTCCCGCT 3 TAAAGGGTACGCCGGA 1.000000 13 CIATACTTCTAAGGDAGGGTAAGGTAACCATCCCGCC 1 TAAAGGGCGCGCCAGA 1.000000 14 CIATACTTCTAAGGDAGGGTAAGGTAACCATCCCGCC 2 TAAAGGGCGCGCCAGA 1.000000 15 CIATACTTCTAAGGDAGGGTAAGGTAACCATCCCGCC 3 AATAGGACGCACCAAG 1.000000 16 CIATACTTCTAAGGDTGGATGGGGTGATAACGCTAGC 3 TGTAGGATACATTAAG 1.000000 17 CIATACCTCGAAGGDAGGGTGGGCTGACAATCCTGCC 2 TAAAGGGCGCGCCAGA 1.000000 18 CIATACCTCGAGAGDAGGGTGGGCTGATAGCGCCGGC 3 AATCGGGTACGCCAGA 1.000000 19 CIATACCTCGAGAGDAGGGCGGGCTGCCCGCCCCGGC 1 AATAGGGTACGCCGGA 1.000000 20 CIATACCTCGAGAGDAGGGCGGGCTGCCCGCCCCGGC 3 AATAGCGTATGCTAAG 1.000000 21 CIATACCTCGAGAGDAGGGCGGGCTGCCCGCCCCGGC 3 AATAAGGTACGCCGGA 4.000000 22 CIATACCTCGAGAGDAGGGCGGGCTGCTAGCCCCGGC 3 AATAAGGTACGCCGGA 1.000000 23 CIATACCTCGAGAGDAAGGTGGACTGATAGCCACACT 3 AATAGGGTACGCCGGA 1.000000 24 CIATACCTCGAGAGDAAGGTGGACTGATAGCCACACT 3 AATAGCGTATGCCAGA 1.000000 25 CIATACCTCGAGAGITGAGTGGGCTGATAACGCCGGT 3 AATAAGGCGCGCCAGA 1.000000 26 CIATACCTCGAGAGITGAGTGGGCTGATAGCGCCGGC 3 AATAGGGTACGCCGGA 1.000000 27 CIATACCTCGAGAGITGAGCGGGCTGCCAGCCCCGGC 3 AATAAGGTACGCCGGA 1.000000 28 CIATACCTCTAAGGDAAGGTGGACTGATAGCCACACT 3 AATAGGATACATTAAG 1.000000 29 CIATACCTCTAAGGITGAGTGGGGTGATCGCCCCGGT 3 AAAAGGGTACGCCGGA 1.000000 30 CIATACCTCTAGAGDAAGGTGGACTGATAGCCACACC 3 AATAAGATACATTAAG 1.000000 31 CIATACCTAGAGAADAAGGTGGAGTGATAGTCCCGCT 3 TATCGGGTACGCCAGA 1.000000 32 CIATACCCCGAGAGDAGGGTGGGCTGACAGCCCCGCC 3 TATCGGGTACGCCAGA 1.000000 33 CIATACCCCGAGAGDAAGGTGGACTGATAGCCACACT 3 AATAGGATACATTAAG 1.000000 34 CIATACCCCGAGAGDTGGATGGGGTGATAATGCCGGC 2 TAACGGGCGCACCAGA 1.000000 35 CIATACCCCTAAGGDAGGGTAAGCTAACAGCGCCGGC 3 AATAAGGTACGCCGGA 1.000000 36 CIATACCCCTAAGGDAGGGTGGGCTGATAATGCCGGC 2 TAACGGGTACGCCAGA 1.000000 37 CIATACCCCTAAGGITGAGTGGGGTGATAGCGCCGGT 3 AATAGGGTACGCCAGA 1.000000 38 CIATACCCCTAAGGITGAGTGGGGTGATCGCCCCGGT 3 AATAGCGTACGCCGGA 1.000000 39 CIATACCCCTAAGGITGAGTGGGGTGATCGTGCCGGC 3 TATCGGGTACGCCAGA 1.000000 40 CIATATTTAGAGAADAAGGTGGACCGATAGCCACACT 3 AATAGCGTATGCCAGA 3.000000 41 CIATATTTAGAGAADAAGGTGGACCGATAGCCACACT 3 AATAGCGTATGCCGGA 1.000000 42 CIGCACTTCTAAGGDAGGGCGGGCTGCCAGCCCCGGC 3 AATAAGGTACGCCGGA 3.000000 43 CIGCACTTCTAAGGDAGGGCGGGCTGCCAGCGCCGGC 3 AATAAGGTACGCCGGG 1.000000 44 CIGCACTTCTAAGGDAGGGCGGGCTGCCCGCGCCGGC 3 AATAAGGTACGCCGGA 1.000000 45 CIGCACTTCTAAGGDTGGATGGGGTGATAACGCTGGC 3 TGTAGGATACATTAAG 5.000000 46 CIGCATTTAGAGAGDAAGGTGGAGTGATAGTCCCGCC 2 TAAAGGGCGCACTAGA 1.000000 47 CIGCATTTAGAGAADAGGGCGGGCTGCCAGCCCCGGC 3 AATAAGGTACGCCGGA 1.000000 48 CIGCATTTAGAGAADAAGGTGGACTGATAGCCACACT 3 AATAGGATACATTAAG 4.000000 49 CIGCATTTAGAGAADAAGGTGGACCGACCGCCCCGGC 3 AATAGGATACATTAAG 8.000000 50 CIGCATTTAGAGAADAAGGTGGACCGACCGCCCCGGC 3 AATAGCGTATGCCAGA 1.000000 51 CIGCATTTAGAGAADAAGGTGGACCGACCGCCCCGGC 3 AATAACGTATGCCAGA 1.000000 52 CIGCATTTAGAGAADAAGGTGGACCGATAGCCCCGGC 3 AATAAGGTACGCCGGA 4.000000 53 CIGCATTTAGAGAADAAGGTGGACCGATAGCCACACC 3 AATAAGGTACGCCGGA 1.000000 54 CIGCATTTAGAGAADAAGGTGGACCGATAGCCACACT 3 AATAGGATACATTAAG 3.000000 55 CIGCATTTAGAGAADAAGGTGGACCGATAGCCACACT 3 AATAGGGTATGCCAGA 1.000000 56 CIGCATTTAGAGAADAAGGTGGACCGATAGCCACACT 3 AATAGCGTATGCCAGA 17.000000 57 CIGCATTTAGAGAADAAGGTGGACCGATAGCCACACT 3 AATAGCGTATGCCGGA 1.000000 58 CIGCATTTAGAGAADAAGGTGGACCGATAGCCACACT 3 AATAGCGTATGTTAAG 3.000000 59 CIGCATTTAGAGAADTGGATGGGGTGATAACGCCGGC 3 TGTAGGATACATTAAG 4.000000 60 CIGCATTTAGAGAAITGAGTGGGCTGATAGCGCCGGC 3 AATAGGGTACGCCGGA 3.000000 61 CIGCATTTAGAGAAITGAGTGGGCTGATCGCGCCGGT 3 AATAAGGCGCGCCAGA 1.000000 62 CIGCATTTAGAGAAITGAGTGGGCTGATCGTGCCGGC 3 TATCGGATACATCAAG 1.000000 63 CIGCATTTAGTGAADAAGGTGGACTGATAGCCACACC 3 AATAGGATACATTAAA 1.000000 64 CIGCATTTAGTGAADAAGGTGGACTGATAGCCACACC 3 AATAGGATACATTAAG 1.000000 65 CIGCATTTAGTGAADAAGGTGGACTGATAGCCACACT 3 AATAGGATACACCGAG 2.000000 66 CIGCATTTAGTGAADAAGGTGGACTGATAGCCACACT 3 AATAGGATACATTAAG 9.000000 67 CIGCATTTAGTGAADAAGGTGGACTGATAGCCACACT 3 AGTAGGATACATTAAG 1.000000 68 CIGCATTTAGTGAADTGGATGGGGTGATAACGCTGGC 3 TGTAGGATACACTAAG 1.000000 69 CIGCATTTATAAGGDAGGGTAGGCTGACAGCCCCGCC 3 TATCGGGTACGCCAGA 1.000000 70 CIGCATCTAGTGAADAAGGTGGACTGATAGCCACACT 3 AATAGGATACATTAAG 2.000000 71 CIGCATCTAGTGAADAAGGTGGACTGATAGCCACACT 3 AATAGGGTACGTCGGA 1.000000 72 CIGCATCTAGTGAADAAGGTGGACTGATAGCCACACT 3 AATAGCGTACGCCAGG 2.000000 73 CIGCATCTAGTGAADAAGGTGGACCGATAGCCACACC 3 AATAAGGTACGCCAGA 1.000000 74 CDACACTTCTAAGGDAAGGTGGAGCGATAGCCACACT 3 AATAGCGTATGCCAGA 6.000000 75 CDACACCCCTAAGGDAGGGCGGGCTGCCAGCCCCGGC 3 AATAGGATACATTAAG 1.000000 76 CDATACTTCTAAGGDAGGGTGGGCTGACAATCCTGCC 2 TAAAGGGCGCGCCAGA 1.000000 77 CDATACTTCTAAGGDAGGGTGGGCTGATAGCGCCGGC 3 AATAGGGTACGCCAGA 2.000000 78 CDATACTTCTAAGGDAAGGTGGACTGATAGTCCCGCC 3 TAAAAGGTACGCCAGA 1.000000 79 CDATACTTCTAAGGDAAGGTGGACCGATAGCCACACT 3 AATAGCGTATGCCAGA 2.000000 80 CDATACTTCTAAGGDTGGATGGGGTGATAACGCCGGC 3 TGTAGGATACATTAAG 2.000000 81 CDATACTTCTAAGGDTGGATGGGGTGATAACGCCGGC 3 TGTAGGGTATGCCAGA 1.000000 82 CDATACTTCTAAGGDTGGATGGGGTGATAACGCTGGC 3 AGTAGGATACATTAAG 1.000000 83 CDATACTTCTAAGGDTGGATGGGGTGATAACGCTGGC 3 TGTAGGATACATTAAG 11.000000 84 CDATACTTCTAAGGDTGGATGGGGTGATAACGCTGGC 3 TGTAGGGTACGCCGGA 1.000000 85 CDATACTTCTAAGGDTGGATGGGGTGATAACGCTGGC 3 TGTAAGACGCATTAAG 1.000000 86 CDATACTTCTAAGGDTGGATGGGGTGATAACGCTGGC 3 TGTAAGGTACGCCGGA 2.000000 87 CDATACTTCTAAGGDTGGATGGGGTGATAACGCTGGT 3 TGTAGGATACATTAAG 1.000000 88 CDATACTTCTAAGGDTGGATGGGGTGATAACGCTGGT 3 TGTAAGACGCATTAAG 1.000000 89 CDATACTTCTAAGGDTGGATGGGGTGATAACGCTAGC 3 TGTAGGATACATTAAG 3.000000 90 CDATACTTCTAAGGITGAGTGGGCTGATAGCGCCGGC 3 AATAGGGTACGCCGGA 1.000000 91 CDATACTTCTAAGGITGAGTGGGGTGATCGTGCCGGC 3 TATCGGGTACGCCAGA 1.000000 92 AIACACCTCGAGGGDAGGGTGGGCTGACCGTGCCGGT 3 AATAGGACGCACCAAG 1.000000 93 AIACATTTAGAGAADAAGGTGGACTGATAGCCACACC 3 AATAGGATACATTAAG 1.000000 94 AIACGCCTCGAGGGDAGGGTAAGCTAACAACGCCGGC 3 TGTAGGATACATTAAG 1.000000 95 AIACGCCTCGAGGGDAGGGTAAGCTAACAGCCCCGGC 3 AATAGGATACATTAAG 1.000000 96 AIACGCCTCGAGGGDAGGGTAAGCTAACAGTGCCGGC 1 AATAGGATACATCAAG 1.000000 97 AIACGCCTCGAGGGDAGGGTAAGCTAACAGTGCCGGC 3 AATCGGGCGCACCAGA 1.000000 98 AIACGCCTCGAGGGDAGGGTAAGCTAACAGTGCCGGC 3 AATCGGGCGCGCCAGA 1.000000 99 AIACGCCTCGAGGGDAGGGTAAGCTAACCGCCCCGGC 3 AATAAGGTACGCCGGA 1.000000 100 AIACGCCTCGAGGGDAGGGTAAGCTAATAGTCCCGCC 2 TAAAGGGCGCACTAGA 1.000000 101 AIACGCCTCGAGGGDAGGGTAAGCTAATCGCGCCGGC 2 TATAGGGCGCACCAGA 1.000000 102 AIACGCCTCGAGGGDAGGGTGGGCTGATAGCCACACC 3 AATAGGATACATTAAG 2.000000 103 AIACGCCTCGAGGGDAAGGTGGACTGATAGCCACACT 3 AATAGGATACATTAAG 3.000000 104 AIACGCCTCGAGGGDAAGGTGGACTGATAGCCACACT 3 AATAGGGTACATTAAG 1.000000 105 AIACGCCTCGAGGGITGAGTGGGCTGATAACGCCGGC 3 TGTAGGATACATTAAG 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY D001: (1,15) D002: (34,95) D003: (13,93) D004: (17,98) D005: (10,32) D006: (4,96) D007: (29,66) D008: (18,23) D009: (46,103) D010: (83,97) D011: (92,100) D012: (36,60) D013: (14,91) D014: (62,73) D015: (60,61) DY01: (31,69) DY02: (25,33) DY03: (30,78) DY04: (37,38) DY05: (12,104) DY06: (102,102) DY07: (11,105) DY08: (35,39) DY09: (101,103) DY10: (2,19) DY11: (28,8) DY12: (9,99) E101: (55,64) E102: (66,66) E103: (83,87) E104: (83,85) E105: (84,88) E106: (68,83) E107: (65,81) E108: (66,48) E109: (59,83) E110: (77,80) E111: (45,83) E112: (63,83) E113: (7,86) E114: (48,80) E115: (77,83) E116: (71,90) E117: (65,83) E118: (48,66) E119: (53,66) E120: (66,70) E121: (59,59) E122: (54,72) H101: (74,89) H102: (49,54) H103: (49,56) H104: (44,56) H105: (72,74) H106: (49,74) H107: (59,82) H108: (50,56) H109: (49,74) H110: (49,76) H111: (83,103) H112: (74,89) H113: (43,86) H114: (74,75) H115: (57,66) H116: (49,70) H117: (49,49) H118: (56,79) H119: (66,83) H120: (56,94) H121: (56,89) H122: (56,67) X101: (42,48) X102: (40,58) X103: (51,58) X104: (52,52) X105: (5,20) X106: (3,6) X107: (42,45) X108: (22,24) X109: (21,47) X110: (56,60) X111: (27,41) X112: (26,56) X113: (42,58) X114: (56,79) X115: (21,45) X116: (6,56) X117: (16,56) X118: (40,52) X119: (21,56) X120: (21,40) X121: (45,56) X122: (52,56) X123: (54,56) X124: (45,56) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 D001 C I A C A C T T C G A A G G D A G G G T A A G C T G A C A A C C C C G C C 3 T A T C G G G T A C G C C A G A C [I] A T A C T T C T A A G G D A G G G T A A G G T A A C C A T C C C G C C 3 A A T A G G A C G C A C C A A G 0 D002 C I A T A C C C C G A G A G D T G G A T G G G G T G A T A A T G C C G G C 2 T A A C G G G C G C A C C A G A A I A C G C C T C G A G G G D A G G G T A A G C T A A C A G C C C C G G C 3 A A T A G G A T A C A T T A A G 0 D003 (C) [I] A T A C T T C T A A G G D A G G G T A A G G T A A C C A T C C C G C C 1 T A A A G G G C G C G C C A G A (A) I A C A T T T A G A G A A D A A G G T G G A C T G A T A G C C A C A C C 3 A A T A G G A T A C A T T A A G 0 D004 C I A T A C C T C G A A G G D A G G G T G G G C T G A C A A T C C [T] G C C 2 T A A A G G G C G C G C C A G A A I A C G C C T C G A G G G D A G G G T A A G C T A A C [A] G T G C C G G C 3 A A T C G G G C G C G C C A G A 0 D005 C I A [C] A C (T) C C G A G A G I T G A G T G G G G T G A T A G C G C C G G T 3 A A T A G G G T A C G C C A G A C I A [T] A C (C) C C G A G A G D A G G G T G G G C T G A [C] A [G] C C C C G C C 3 T A T C G G G T A C G C C A G A 0 D006 C I A C A C T T C G A A G G I T G A G T G G G C T G A T A G C G C C G G C 1 A A T A G G (G) T A C (G) (C) C (G) (G) (A) A I A C G C C T C G A G G G D A G G G T A A G C T A A C A G T G C C G G C 1 A A T A G G (A) T A C (A) (T) C (A) (A) (G) 0 D007 C I A [T] A C (C) T C T A A G G I T G A G T G G G G T G A T C G C C C C G G [T] [3] A A A A G G G T A C G C C G G A C I G C A T (T) T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 D008 C I A T A C C T C G A G A G D A G G G T G G G C T G A T A G C G C C G G C 3 [A] A T C G G G [T] A C G C C A G A C I A T A C C T C G A G A G D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A [G] G G T A C G C C G G A 0 D009 (C) I (G) C (A) (T) (T) T (A) G A G (A) G D A A G G T G G A G T G A T A G T C C C G C C 2 T A A A G G G C G C A C T A G A (A) I (A) C (G) (C) (C) T (C) G A G (G) G D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 D010 C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A G G A T A C A T T A A G A I A C G C C T C G A G G G D A G G G T A A G C T A A C [A] G T G C C G G C 3 A A T C G G G C G C A C C A G A 0 D011 A I A C (A) C C T C G A G G G D A G G G T G G G C T G A C C G T G C C G G T 3 A A T A G G A C G C A C C A A G A I A C (G) C C T C G A G G G D A G G G T A A G C T A A T A G T C C C G C C 2 T A A A G G G C G C A C T A G A 0 D012 C I A T A C C C C T A A G G D A G G G T G G G C T G A [T] A [A] T G C C G G C 2 T A A C G G G [T] [A] C G C C A G A C I G C A T T T A G A G A A I T G A G T G G G C T G A T A G C G C C G G C 3 A A T A G G G T A C G C C G G A 0 D013 C (I) A T A C T T C T A A G G D A G G G T A A G G T A A C C A T C C C G C C 2 T A A A G G G C G C G C C A G A C (D) A T A C T T C T A A G G I T G A G T G G G G T G A T C G T G C C G G C 3 T A T C G G G T A C G C C A G A 0 D014 C I G C A T (T) T A G (A) G A A I T G A G T G G G C T G A T C G T G C C G G C 3 T A T C G G (A) T A C (A) (T) [C] A (A) (G) C I G C A T (C) T A G (T) G A A D A A G G T G G A C C G A T A G C C A C A C C 3 A A T A A G (G) T A C (G) (C) [C] [A] (G) (A) 0 D015 C I G C A T T T A G A G A A I T G A G T G G G C T G A T A G C G C C G G C 3 A A T A G G G T A C G C C G G A C I G C A T T T A G A G A A I T G A G T G G G C T G A T C G C G C C G G T 3 A A T A A G G C [G] C G C C A G A 0 DY01 C I A T A C C T A G A G A A D A A G G T G G A G T G A T A G T C C C G C T 3 T A T [C] G G G T A C G C C A G A C I G C A T T T A T A A G G D A G G G T A G G C T G A C A G C C C C G C C 3 T A T C G G G T A C G C C A G A 0 DY02 C I A T A C C T C G A G A G [I] [T] G [A] G T G G G C T G A T A A C G C C G G T 3 A A T A A G G C G C G C C A G A C I A T A C C C C G A G A G D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 DY03 C [I] A T A C (C) T C T A (G) (A) G D A A G G T G G A C T G A T A G (C) C (A) C (A) C C 3 (A) A (T) A A G A T A C A T T A A G C [D] A T A C (T) T C T A (A) (G) G D A A G G T G G A C T G A T A G (T) C (C) C (G) C C 3 (T) A (A) A A G G T A C G C C A G A 0 DY04 C I A T A C C C C T A A G G I T G A G T G G G G T G A T A G C G C C G G T 3 A A T A G G G T A C G C C A G A C I A T A C C C C T A A G G I T G A G T G G G G T G A T C G C C C C G G T 3 A A T A G C G T A C G C C G G A 0 DY05 (C) I A C (A) (T) (T) T (A) G A G (A) (A) D A A G G T G G A C T G A T A G T C C C G C T 3 T A A A G G G T A C (G) (C) (C) (G) (G) A (A) I A C (G) (C) (C) T (C) G A G (G) (G) D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G G T A C (A) (T) (T) (A) (A) [G] 0 DY06 A I A C G C C T C G A G G G D A G G G T G G G C T G A T A G C C A C A C C 3 A A T A G G A T A C A T T A A G A I A C G C C T C G A G G G D A G G G T G G G C T G A T A G C C A C A C C 3 A A T A G G A T A C A T T A A G 0 DY07 (C) I A C (A) C C T C (T) A (A) G G (D) (A) (A) (G) G T G G (A) C T G A T A G C C A C A C C 3 A A T A G G A T A C A T T A A G (A) I A C (G) C C T C (G) A (G) G G (I) (T) (G) (A) G T G G (G) C T G A T A A C G C C G G C 3 T G T A G G A T A C A T T A A G 0 DY08 C I A T A C C C C T A A G G D A G G G T A A G C T A A C A G C G C C G G C 3 A A T A A G G T A C G C C G G A C I A T A C C C C T A A G G I T G A G T G G G G T G A T C G T G C C G G C 3 T A T C G G G T A C G C C A G A 0 DY09 A I A C G C C T C G A G G G D A G G G T A A G C T A A T C G C G C C G G C 2 T A T A G G (G) (C) (G) C A (C) (C) A (G) (A) A I A C G C C T C G A G G G D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G (A) (T) (A) C A (T) (T) A (A) (G) 0 DY10 C I A C A C T T C G A A G G D A G G G T G G G C T G A C C G T G C C G G T (3) (T) A T (C) G G G T A C G C C (A) G A C I A T A C C T C G A G A G D A G G G C G G G C T G C C C G C C C C G G C (1) (A) A T (A) G G G T A C G C C (G) G A 0 DY11 C [I] A (T) A C (C) T C T A A G G D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G C I [A] (C) A C (T) T C T A A G G D A G G G C G G G C T G C T A G C C C C G C C 2 A A A A G G G T A C G C C G G A 0 DY12 C I A C A C T C C G A G A G I T G A G T G G G [G] T G A C C G C C C C G G C 3 A A T A G G G T G C G C C G G A A I A C G C C T C G A G G G D A G G G T A A G C T A A C C G C C C C G G C 3 A A T A A G G T A C G C C G G A 0 E101 C I G C A T T T A G (A) G A A D A A G G T G G A C (C) G A T A G C C A C A C (T) 3 A A T A G G [G] T A T G C C A G A C I G C A T T T A G (T) G A A D A A G G T G G A C (T) G A T A G C C A C A C (C) 3 A A T A G G A T A C A T T A A [G] 0 E102 C I G C A T T T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G C I G C A T T T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 E103 C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A G G A T A C A T T A A G C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G T 3 T G T A G G A T A C A T T A A G 0 E104 C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A G G A T A C A T T A A G C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A A G A C G C A T T A A G 0 E105 C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C [T] G G C 3 T G T A G G G T A C G C C G G A C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G T 3 T G T A A G A C G C A T T A A G 0 E106 C I G C A T T T A G T G A A D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A G G A T A C A C T A A G C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A G G A T A C A T T A A G 0 E107 C I G C A T T T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A C C G A G C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C C G G C 3 T G T A G G G T A T G C C A G A 0 E108 C I G C A T T T A G [T] G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G C I G C A T T T A G [A] G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 E109 C I G C A T T T A G A G A A D T G G A T G G G G T G A T A A C G C C G G C 3 T G T A G G A T A C A T T A A G C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C [T] G G C 3 T G T A G G A T A C A T T A A G 0 E110 C D A T A C T T C T A A G G D A G G G T G G G C T G A T A G C G C C G G C 3 A A T A G G G T A C G C C A G A C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C C G G C 3 T G T A G G A T A C A T T A A G 0 E111 C I G C A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A G G A T A C A T T A A G C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A G G A T A C A T T A A G 0 E112 C I G C A T T T A G T G A A D A A G G T G G A C T G A T A G C C A C A C C 3 A A T A G G A T A C A T T A A (A) C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A G G A T A C A T T A A (G) 0 E113 C I A C A C T T C G A A G G I T G A G T G G G C T G A T A G C G C C G G C 3 A G T A (G) G (A) T A C (A) (T) (T) (A) (A) (G) C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A (A) G (G) T A C (G) (C) (C) (G) (G) (A) 0 E114 C (I) (G) (C) A (T) T T (A) (G) A (G) (A) (A) D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G C (D) (A) (T) A (C) T T (C) (T) A (A) (G) (G) D T G G A T G G G G T G A T A A C G C C G G C 3 T G T A G G A T A C A T T A A G 0 E115 C D A T A C T T C T A A G G D A G G G T G G G C T G A T A G C G C C G G C 3 A A T A G G G T A C G C C A G A C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C [T] G G C 3 T G T A G G A T A C A T T A A G 0 E116 C I G C A T C T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G G T A C G T C G G A C D A T A C T T C T A A G G I T G A G T G G G C T G A T A G C G C C G G C 3 A A T A G G G T A C G C C G G A 0 E117 C I G C A T T T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A C C G A G C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C [T] G G C 3 T G T A G G A T A C A T T A A G 0 E118 C I G C A T T T A G A G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G C I G C A T T T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 E119 C I G C A T T T A G (A) G A A D A A G G T G G A C (C) G A T A G C C A C A C C 3 A A T A A G G T A C G C C G G A C I G C A T T T A G (T) G A A D A A G G T G G A C (T) G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 E120 C I G C A T T T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G C I G C A T C T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 E121 C I G C A T T T A G A G A A D T G G A T G G G G T G A T A A C G C C G G C 3 T G T A G G A T A C A T T A A G C I G C A T T T A G A G A A D T G G A T G G G G T G A T A A C G C C G G C 3 T G T A G G A T A C A T T A A G 0 E122 C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G C I G C A T C T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G C G T A C G C C A G G 0 H101 C D A C A C T T C T A A G G D A A G G T G G A G C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T A G C 3 T G T A G G A T A C A T T A A G 0 H102 C I G C A T T T A G A G A A D A A G G T G G A C C G A C C G C C C C G G C 3 A A T A G G A T A C A T T A A G C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 H103 C I G C A T T T A G A G A A D A A G G T G G A C C G A C C G C C C C G G C 3 A A T A G G A T A C A T T A A G C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 H104 C I G C A C T T C T A A G G D A G G G C G G G C T G C C (C) G C (G) C C G G C 3 A A T A A G G T A C G C C G G A C I G C A T T T A G A G A A D A A G G T G G A C C G A T (A) G C (C) A C A C T 3 A A T A G C G T A T G C C A G A 0 H105 C I G C A T C T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G C G T A C G C C A G G C D A C A C T T C T A A G G D A A G G T G G A G C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 H106 C I G C A T T T A G A G A A D A A G G T G G A C C G A C C G C C C C G G C 3 A A T A G G A T A C A T T A A G C D A C A C T T C T A A G G D A A G G T G G A G C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 H107 C I G C A T T T A G A G A A D T G G A T G G G G T G A T A A C G C (C) G G C 3 (T) G T A G G A T A C A T T A A G C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C (T) G G C 3 (A) G T A G G A T A C A T T A A G 0 H108 C I G C A T T T A G A G A A D A A G G T G G A C C G A C C G C C C C G G C 3 A A T A G C G T A T G C C A G A C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 H109 C I G C A T T T A G A G A A D A A G G T G G A C C G A C C G C C C C G G C 3 A A T A G G A T A C A T T A A G C D A C A C T T C T A A G G D A A G G T G G A G C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 H110 C I G C A T T T A G A G A A D A A G G T G G A C C G A C C G C C C C G G C 3 A A T A G G A T A C A T T A A G C D A T A C T T C T A A G G D A G G G T G G G C T G A C A A T C C [T] G C C 2 T A A A G G G C G C G C C A G A 0 H111 C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C [T] G G C 3 T G T A G G A T A C A T T A A G A I A C G C C T C G A G G G D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 H112 C D A C A C T T C T A A G G D A A G G T G G A G C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T A G C 3 T G T A G G A T A C A T T A A G 0 H113 C I G C A C T T C T A A G G D A G G G C G G G C T G C C A G C G C C G G C 3 A A T A A G G T A C G C C G G (G) C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A A G G T A C G C C G G (A) 0 H114 C D A C A C T T C T A A G G D A A G G T G G A G C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A C D A C A C C C C T A A G G D A G G G C G G G C T G C C A G C C C C G G C 3 A A T A G G A T A C A T T A A G 0 H115 C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C G G A C I G C A T T T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 H116 C I G C A T T T A G A G A A D A A G G T G G A C C G A C C G C C C C G G C 3 A A T A G G A T A C A T T A A G C I G C A T C T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 H117 C I G C A T T T A G A G A A D A A G G T G G A C C G A C C G C C C C G G C 3 A A T A G G A T A C A T T A A G C I G C A T T T A G A G A A D A A G G T G G A C C G A C C G C C C C G G C 3 A A T A G G A T A C A T T A A G 0 H118 C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A C D A T A C T T C T A A G G D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 H119 C I G C A T T T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G C D A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C [T] G G C 3 T G T A G G A T A C A T T A A G 0 H120 C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A A I A C G C C T C G A G G G D A G G G T A A G C T A A C A A C G C C G G C 3 T G T A G G A T A C A T T A A G 0 H121 C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A C [D] A T A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T A G C 3 T G T A G G A T A C A T T A A G 0 H122 C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A (A) T A G C G T A T G C C A G A C I G C A T T T A G T G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A (G) T A G G A T A C A T T A A G 0 X101 C I G C A C T T C T A A G G D A G G G C G G G C T G C C A G C C C C G G C 3 A A T A A G G T A C G C C G G A C I G C A T T T A G A G A A D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G 0 X102 C I (A) [T] A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A C I (G) C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G T T A A G 0 X103 C I G C A T T T A G A G A A D A A G G T G G A C C G A C C G C C C C G G C 3 A A T A (A) C G T A T G (C) (C) A (G) (A) C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A (G) C G T A T G (T) (T) A (A) (G) 0 X104 C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C C C G G C 3 A A T A A G G T A C G C C G G A C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C C C G G C 3 A A T A A G G T A C G C C G G A 0 X105 C I A C A C T T C G A A G G I T G A G T G G G C T G A T A G C G C C G G C 3 A A T A G G G T A C A T T A A G C I A T A C C T C G A G A G D A G G G C G G G C T G C C [C] G C C C C G G C 3 A A T A G C G T A T G C T A A G 0 X106 C I A C A C T T C G A A G G D A A G G T G G A C T G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G C I A C A C T T C G A A G G I T G A G T G G G C T G A T A G C G C C G G C 3 A A T A G G G T A C G C C G G A 0 X107 C I G C A C T T C T A A G G D A G G G C G G G C T G C C A G C C C C G G C 3 A A T A A G G T A C G C C G G A C I G C A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A G G A T A C A T T A A G 0 X108 C I A T A C C T C G A G A G D A (G) G G (C) G G (G) C T G (C) T A G C C C C G G C 3 A A T A A G G T A C G C C G G A C I A T A C C T C G A G A G D A (A) G G (T) G G (A) C T G (A) T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 X109 C I A T A C C T C G A G A G D A G G G C G G G C T G C C C G C C C C G G C 3 A A T A A G G T A C G C C G G A C I G C A T T T A G A G A A D A G G G C G G G C T G C C A G C C C C G G C 3 A A T A A G G T A C G C C G G A 0 X110 C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A C I G C A T T T A G A G A A I T G A G T G G G C T G A T A G C G C C G G C 3 A A T A G G G T A C G C C G G A 0 X111 C I A T A C C T C G A G A G I T G A G C G G G C T G C C A G C C C C G G C 3 A A T A A G G T A C G C C G G A C I A T A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C G G A 0 X112 C I (A) (T) A (C) (C) T (C) G A G A (G) I T G A G T G G G C T G A T A G C G C C G G C 3 A A T A G G G T A C G C C G G A C I (G) (C) A (T) (T) T (A) G A G A (A) D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 X113 C I G C A C T T C T A A G G D A G G G C G G G C T G C C A G C C C C G G C 3 A A T A A G G T A C G C C G G A C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G T T A A G 0 X114 C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A C D A T A C T T C T A A G G D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 X115 C I A T A C C T C G A G A G D A G G G C G G G C T G C C C G C C C C G G C 3 A A T A A G G T A C G C C G G A C I G C A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A G G A T A C A T T A A G 0 X116 C I A C A C T T C G A A G G I T G A G T G G G C T G A T A G C G C C G G C 3 A A T A G G G T A C G C C G G A C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 X117 C I (A) (T) A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T A G C 3 T G T A G G A T A C A T T A A G C I (G) (C) A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 X118 C I (A) [T] A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A C I (G) C A T T T A G A G A A D A A G G T G G A C C G A T A G C C C C G G C 3 A A T A A G G T A C G C C G G A 0 X119 C I A T A C C T C G A G A G D A G G G C G G G C T G C C C G C C C C G G C 3 A A T A A G G T A C G C C G G A C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 X120 C I A T A C C T C G A G A G D A G G G C G G G C T G C C C G C C C C G G C 3 A A T A A G G T A C G C C G G A C I A T A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 X121 C I G C A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A G G A T A C A T T A A G C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 X122 C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C C C G G C 3 A A T A A G G T A C G C C G G A C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 X123 C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G G A T A C A T T A A G C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A 0 X124 C I G C A C T T C T A A G G D T G G A T G G G G T G A T A A C G C T G G C 3 T G T A G G A T A C A T T A A G C I G C A T T T A G A G A A D A A G G T G G A C C G A T A G C C A C A C T 3 A A T A G C G T A T G C C A G A END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 D001 = ? ? ? = = = = = G = = = = ? ? ? ? = = = = = C = G = = A = C = = = = = = = T ? = C = = G T A = G = = ? ? A = ? ? ? = = = = = T = = = = ? ? ? ? = = = = = G = A = = C = T = = = = = = = A ? = A = = A C G = A = = ? ? G 0 D002 C = = T A = = C = = = = A = ? T = = A = G G = G = G = T = A T G = = = = = 2 T ? A C = = G C G = = C C = G A A = = C G = = T = = = = G = ? A = = G = A A = C = A = C = G C C = = = = = 3 A ? T A = = A T A = = T T = A G 0 D003 (C) ? = ? = C = = C T = A G G = = G = = = A A G G = A = C C A T = C = G = = 1 T = A = = = G ? ? = G C C = G A (A) ? = ? = T = = A G = G A A = = A = = = G G A C = G = T A G C = A = A = = 3 A = T = = = A ? ? = A T T = A G 0 D004 C ? = T A = = = = = = A = = = = = = = = G G = = = G = ? ? ? = C ? ? ? C = 2 ? ? A A = = = = = = = = = = = = A ? = C G = = = = = = G = = = = = = = = A A = = = A = ? ? ? = G ? ? ? G = 3 ? ? T C = = = = = = = = = = = = 0 D005 = = = ? = = (T) = = = = = = = I T = A = = = = = G = = = ? ? ? = G = = = G T = A ? = A = = = ? ? = = = = = = = = = = ? = = (C) = = = = = = = D A = G = = = = = C = = = ? ? ? = C = = = C C = T ? = C = = = ? ? = = = = = = = 0 D006 C = = = A = T = = = = A = = I T = A = = G G = = = G = T = = C = = = = = = = = = = = = = (G) = = = (G) (C) = (G) (G) (A) A = = = G = C = = = = G = = D A = G = = A A = = = A = C = = T = = = = = = = = = = = = = (A) = = = (A) (T) = (A) (A) (G) 0 D007 = = A ? = C (C) = C T A A G G I T G A = = = = G G = = = = C = = = C = G G ? ? ? ? A = = = G = = = G C ? G ? A = = G ? = T (T) = A G T G A A D A A G = = = = A C = = = = A = = = A = A C ? ? ? ? T = = = A = = = A T ? A ? G 0 D008 = = = ? = = = = = = = = = = = = G = ? ? = = G = = = = = = = = G C = G G C = ? ? ? C ? ? = ? ? = = = = A = = = = = ? = = = = = = = = = = = = A = ? ? = = A = = = = = = = = C A = A C T = ? ? ? A ? ? = ? ? = = = = G = = 0 D009 (C) = (G) ? (A) (T) (T) = (A) = = = (A) = = = ? ? = = = = = G = = = = = = T = C = G = C 2 T = A = = = G ? ? = = C = = ? A (A) = (A) ? (G) (C) (C) = (C) = = = (G) = = = ? ? = = = = = C = = = = = = C = A = A = T 3 A = T = = = A ? ? = = T = = ? G 0 D010 C D = T A = T = = T = A = = ? T = = A = G G = G = G = ? ? ? C = = T = = = = T G = A = = A T A = = T T = ? G A I = C G = C = = G = G = = ? A = = G = A A = C = A = ? ? ? T = = C = = = = A A = C = = G C G = = C C = ? A 0 D011 = = = ? (A) = = = = = = = = = = = = = = = G G = = = G = C C = = G = = = G T 3 A = T = = = A = = = = = C = A G = = = ? (G) = = = = = = = = = = = = = = = A A = = = A = T A = = C = = = C C 2 T = A = = = G = = = = = T = G A 0 D012 = = A T = C C C C T = A G G D A = G = = = = = = = = = ? ? ? T = ? ? ? = = 2 T ? A C = = = ? ? = = = = A = = = = G C = T T T A G = G A A I T = A = = = = = = = = = ? ? ? C = ? ? ? = = 3 A ? T A = = = ? ? = = = = G = = 0 D013 = (I) = = = = = = = = = = = = D A = G = = A A = = = A = C = A = C = = = C = 2 = = A A = = ? ? ? = = = = = = = = (D) = = = = = = = = = = = = I T = A = = G G = = = G = T = G = G = = = G = 3 = = T C = = ? ? ? = = = = = = = 0 D014 = = = = = = (T) = = = (A) = = = I T G A = = = = G = T = = = C = T G C = G G = = T = = C G = (A) = = = (A) (T) ? ? (A) (G) = = = = = = (C) = = = (T) = = = D A A G = = = = A = C = = = A = C C A = A C = = A = = A A = (G) = = = (G) (C) ? ? (G) (A) 0 D015 = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = C = = = = = G = = ? ? ? = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = T = = = = = A = = ? ? ? = = ? ? = = 0 DY01 = ? A ? = C C = = G = G A A = = A = = = G = A G = = = T = = T = ? = = = T = = ? = ? = = = ? ? = = = ? ? = ? = ? G ? = T T = = T = A G G = = G = = = A = G C = = = C = = C = ? = = = C = = ? = ? = = = ? ? = = = ? ? = ? 0 DY02 = = = = = = = T ? ? = = = = ? ? ? ? = = = = G = = = = = = A = G C = G G = = = = = = A = G C G = G C C = G ? = = = = = = = C ? ? = = = = ? ? ? ? = = = = A = = = = = = G = C A = A C = = = = = = G = A T A = A T T = A ? 0 DY03 = ? ? = = = (C) = = = = (G) (A) ? ? = = = = = = = = = = = = = = = (C) = (A) = (A) = = = (A) = (T) = = = A = = = A T T = A G = ? ? = = = (T) = = = = (A) (G) ? ? = = = = = = = = = = = = = = = (T) = (C) = (G) = = = (T) = (A) = = = G = = = G C C = G A 0 DY04 = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = G = = = = = = = = = = = G = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = C = = = = = = = = = = = C = = = = = = = G = = 0 DY05 (C) = = = (A) (T) (T) = (A) = = = (A) (A) = = = = = = = = = = = = = ? ? ? T = ? ? ? = = = T = A = = = = = = = (G) (C) (C) (G) (G) ? (A) = = = (G) (C) (C) = (C) = = = (G) (G) = = = = = = = = = = = = = ? ? ? C = ? ? ? = = = A = T = = = = = = = (A) (T) (T) (A) (A) ? 0 DY06 = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = 0 DY07 (C) = = = (A) = = = = (T) = (A) = = (D) (A) (A) (G) = = = = (A) = = = = = = G = C A = A C = = A A = = = = = = = = = = ? ? = = (A) = = = (G) = = = = (G) = (G) = = (I) (T) (G) (A) = = = = (G) = = = = = = A = G C = G G = = T G = = = = = = = = = = ? ? = = 0 DY08 = = = = = = = = = = = = = = D A = G = = A A = C = A = C A = C = = = = = = = A = = A A = = = = = = = ? ? = = = = = = = = = = = = = = = = I T = A = = G G = G = G = T C = T = = = = = = = T = = C G = = = = = = = ? ? = = 0 DY09 = ? ? = = = = = = = = = = = = = G = = = A A G = = A = = C = = G C = G G C 2 T = = = = = (G) (C) (G) = = (C) (C) = (G) (A) = ? ? = = = = = = = = = = = = = A = = = G G A = = G = = A = = C A = A C T 3 A = = = = = (A) (T) (A) = = (T) (T) = (A) (G) 0 DY10 = = = ? = = T = = = = A G = = = ? ? = T = = = = = = A = = = T G = = = = T (3) (T) = = (C) = = = = = = = = = (A) = = = = = ? = = C = = = = G A = = = ? ? = C = = = = = = C = = = C C = = = = C (1) (A) = = (A) = = = = = = = = = (G) = = 0 DY11 = ? ? (T) = = (C) = = = = = = = ? = A = = T = = A = = = A = = = = = A = A = T 3 = = T = = = A = = = A T T A A G = ? ? (C) = = (T) = = = = = = = ? = G = = C = = G = = = C = = = = = C = G = C 2 = = A = = = G = = = G C C G G A 0 DY12 C = = = A = T C = = = = A = I T = A = = G G = ? ? ? = = = = = = = = = = = = = = = = G = = = G ? = = = = = ? A = = = G = C T = = = = G = D A = G = = A A = ? ? ? = = = = = = = = = = = = = = = = A = = = A ? = = = = = ? 0 E101 = = = = = = = = = = (A) = = = ? = = = = = = = = = (C) = = ? ? ? = = ? ? ? = (T) ? = = = = = = ? ? ? T G C C = G ? = = = = = = = = = = (T) = = = ? = = = = = = = = = (T) = = ? ? ? = = ? ? ? = (C) ? = = = = = = ? ? ? C A T T = A ? 0 E102 ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = 0 E103 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = ? = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = ? = = = = = ? ? = = 0 E104 = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = T A = = = ? ? = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = C G = = = ? ? = = 0 E105 = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = ? ? ? = C = = = = = G = G T A = G C C G G A = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = ? ? ? = T = = = = = A = A C G = A T T A A G 0 E106 = I G C = T = = A G T G A A ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = D A T = C = = C T A A G G ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = 0 E107 = I G C = T = = A G T G A A ? A A = G = = = A C = = = = = G = C A = A C T = A A = = = = A = = C A = = G A G = D A T = C = = C T A A G G ? T G = A = = = G G = = = = = A = G C = G G C = T G = = = = G = = T G = = A G A 0 E108 = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E109 = I G C = T = = A G = G A A = = = = = = = = = = = = = ? ? ? = = ? ? ? = = = = = = = = = = ? ? = = = = = = = = D A T = C = = C T = A G G = = = = = = = = = = = = = ? ? ? = = ? ? ? = = = = = = = = = = ? ? = = = = = = = 0 E110 = = = = = = = = = = = = = = = A = = G = = = = C = = = ? ? ? = = = = = = = = A A = = = = G = = = G C C = G A = = = = = = = = = = = = = = = T = = A = = = = G = = = ? ? ? = = = = = = = = T G = = = = A = = = A T T = A G 0 E111 = I G C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? ? = ? = D A T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? ? = ? 0 E112 = I G C = T = = A G T G A A = A A = G = = = A C = = = = = G = C A C A C = = A A = = = = = = = = = = = = = (A) = D A T = C = = C T A A G G = T G = A = = = G G = = = = = A = G C T G G = = T G = = = = = = = = = = = = = (G) 0 E113 ? I ? C = = = = ? G = = = = I = = A G = = = = C = = = = = G = = = C = = = = A = = = (G) = (A) = = = (A) (T) (T) (A) (A) (G) ? D ? T = = = = ? T = = = = D = = G A = = = = G = = = = = A = = = T = = = = T = = = (A) = (G) = = = (G) (C) (C) (G) (G) (A) 0 E114 = (I) (G) (C) = (T) = = (A) (G) = (G) (A) (A) = A ? ? G = = = A C = = = = = G = C A = A C T = A A = = = = = = = = = = = = = = = (D) (A) (T) = (C) = = (C) (T) = (A) (G) (G) = T ? ? A = = = G G = = = = = A = G C = G G C = T G = = = = = = = = = = = = = = 0 E115 = = = = = = = = = = = = = = ? A = = G = = = = C = = = = = G = = ? ? ? = = = A ? = = = = G = = = G C C = G A = = = = = = = = = = = = = = ? T = = A = = = = G = = = = = A = = ? ? ? = = = T ? = = = = A = = = A T T = A G 0 E116 = I G C = T C = A G T G A A ? A A G = = = = A = = = = = = = = C A = A C T = = ? = = = = = = = = = T = = = = = D A T = C T = C T A A G G ? T G A = = = = G = = = = = = = = G C = G G C = = ? = = = = = = = = = C = = = = 0 E117 = I G C = T = = A G T G A ? ? A A = G = = = A C = = = ? ? ? = C ? ? ? C T = A A = = = = = = = = = C C G = = = D A T = C = = C T A A G ? ? T G = A = = = G G = = = ? ? ? = G ? ? ? G C = T G = = = = = = = = = T T A = = 0 E118 = ? = = = = = = = = A = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = ? = = ? = = = = = = = = T = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = ? = 0 E119 = = = ? = = = = = = (A) = = = ? = = = = = = = = = (C) = = = = = = = = = = = C = = = = = A = G = = = G C C G G A = = = ? = = = = = = (T) = = = ? = = = = = = = = = (T) = = = = = = = = = = = T = = = = = G = A = = = A T T A A G 0 E120 = = = = = = T = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E121 = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E122 = = = = = = T = = = A = = = = = ? ? = = = = = = C = = = = = = = = = = = = = = = = = = G A = = = A T T = A = = = = = = = C = = = T = = = = = ? ? = = = = = = T = = = = = = = = = = = = = = = = = = C G = = = G C C = G = 0 H101 = = = C = = = = = = = = = = ? A A = G = = = A = C = = = = G = C A C = C T = A A = = = C G = = T G C C = G A = = = T = = = = = = = = = = ? T G = A = = = G = T = = = = A = G C T = G C = T G = = = G A = = C A T T = A G 0 H102 = = = = = = = = = = = = = = ? = = = = = = = = = = = = C C = = = C = G G C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = T A = = = A = A C T = = = = = = = = = = = = = = = = = 0 H103 = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = ? ? ? G C = = = = = = G A = ? C A T T = A G = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = ? ? ? C T = = = = = = C G = ? T G C C = G A 0 H104 = = = ? = C = = C T = A G G = = G = = C = = G = T = C C (C) = = (G) C = G G C = = = = = A G = ? ? C = = = G = = = = = ? = T = = A G = G A A = = A = = T = = A = C = A T (A) = = (C) A = A C T = = = = = G C = ? ? T = = = A = = 0 H105 = I G = = T C = A G T G A A = = = = = = = = = C T = = = = = = = = = = = = = = = = = = = = = = C = = = = = G = D A = = C T = C T A A G G = = = = = = = = = G C = = = = = = = = = = = = = = = = = = = = = = T = = = = = A 0 H106 = I G = = T = = ? ? = G A A = = = = = = = = = C = = = C C = = = C = G G C = = = = = = G A = = C A T T = A G = D A = = C = = ? ? = A G G = = = = = = = = = G = = = T A = = = A = A C T = = = = = = C G = = T G C C = G A 0 H107 = ? G C = T = = A G = G A A = = = = = = = = = = = = = = = = = = = (C) = = = = (T) = = = = = = = = = = ? = = = = = ? A T = C = = C T = A G G = = = = = = = = = = = = = = = = = = = (T) = = = = (A) = = = = = = = = = = ? = = = = 0 H108 = = = = = = = = = = = = = = = = ? ? = = = = = = = = = C C = = = C = G G C = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = T A = = = A = A C T = = = = = = = = = = = ? ? = = = = 0 H109 = ? G = = T = = A G = G A A ? = = = = = = = = C = = = C C = = = C = G G C = = = = = = G A = = C A T T = A G = ? A = = C = = C T = A G G ? = = = = = = = = G = = = T A = = = A = A C T = = = = = = C G = = T G C C = G A 0 H110 = ? G C = T = = A G = G A ? ? = A = = = = = A = C = = = C G C = ? ? ? G = 3 A = T = = = A T A ? A T T = A G = ? A T = C = = C T = A G ? ? = G = = = = = G = T = = = A A T = ? ? ? C = 2 T = A = = = G C G ? G C C = G A 0 H111 C D = T A = T = = T = A = ? ? T G = A = = = G G = = = ? ? ? = G ? ? ? G C = T G = = = = = = = ? = = = = = = A I = C G = C = = G = G = ? ? A A = G = = = A C = = = ? ? ? = C ? ? ? C T = A A = = = = = = = ? = = = = = = 0 H112 = = = C = = = = = = = = = = = A A = G = = = A = C = = = = G = C A C = C T = A A = = = C G = = T G C C = G A = = = T = = = = = = = = = = = T G = A = = = G = T = = = = A = G C T = G C = T G = = = G A = = C A T T = A G 0 H113 = I G C = = = = = = = = = = = A = = G C = = = C = = C C = G = = = C = = = = A A = = = = = = = ? ? = = = = (G) = D A T = = = = = = = = = = = T = = A T = = = G = = A T = A = = = T = = = = T G = = = = = = = ? ? = = = = (A) 0 H114 = = = = = = T T = = = = = = = = A = = T = = A G C = A T = = = = A = A C T = = = = = = C G = = T G C C = G A = = = = = = C C = = = = = = = = G = = C = = G C T = C C = = = = C = G G C = = = = = = G A = = C A T T = A G 0 H115 = = = ? = = = = = = A = = = ? = = = = = = = = = C = = = = = = = = = = = = = = = = = = C G = = T G C C G ? A = = = ? = = = = = = T = = = ? = = = = = = = = = T = = = = = = = = = = = = = = = = = = G A = = C A T T A ? G 0 H116 = = = = = = T = ? ? A = = = = = ? ? = = = = = = C = = C C = = = C = G G C = = = = = = = = = = = = = = = = = = = = = = = C = ? ? T = = = = = ? ? = = = = = = T = = T A = = = A = A C T = = = = = = = = = = = = = = = = = 0 H117 = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 H118 = I G C = T = = A G = G A A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = D A T = C = = C T = A G G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 H119 = I G C = T = = A G T G A A = A ? ? G = = = A C = = = ? ? ? = C ? ? ? C T = A A = = = = = = = = = = = = = = = D A T = C = = C T A A G G = T ? ? A = = = G G = = = ? ? ? = G ? ? ? G C = T G = = = = = = = = = = = = = = 0 H120 C = G = A T T = A = = = A A = = A = ? ? ? ? ? = C G = T = G = C A = A C T = A A = = = C G = = ? G C C = G A A = A = G C C = C = = = G G = = G = ? ? ? ? ? = T A = C = A = G C = G G C = T G = = = G A = = ? A T T = A G 0 H121 = ? G C = T = = A G = G A A = A A = G = = = A C C = = = = G = C A C = C T = A A = = = C G = = T G C C = G A = ? A T = C = = C T = A G G = T G = A = = = G G T = = = = A = G C T = G C = T G = = = G A = = C A T T = A G 0 H122 = = = = = = = = = = A = = = = = = = = = = = = = C = = = = = = = = = = = = = = (A) = = = C G = = T G C C = G A = = = = = = = = = = T = = = = = = = = = = = = = T = = = = = = = = = = = = = = (G) = = = G A = = C A T T = A G 0 X101 = = = = = C = = C T = A G G = = G = = C = = G = = = C C = = = = C = G G C = = = = = A = G = = = G C C G G A = = = = = T = = A G = G A A = = A = = T = = A = = = A T = = = = A = A C T = = = = = G = A = = = A T T A A G 0 X102 = ? (A) ? = = = = ? ? ? ? ? = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C C = G A = ? (G) ? = = = = ? ? ? ? ? = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T T = A G 0 X103 = = = = = = = = = = = = = = ? = = = = = = = = = = = = C C = = = C = G G C = = = = = (A) = = = = = = (C) (C) = (G) (A) = = = = = = = = = = = = = = ? = = = = = = = = = = = = T A = = = A = A C T = = = = = (G) = = = = = = (T) (T) = (A) (G) 0 X104 = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 X105 = = = C = = T = ? ? ? ? ? = I T = A = T = = = = = = A ? ? ? = G ? ? ? = = = = = = = = G = = = C A T = = = = = = = T = = C = ? ? ? ? ? = D A = G = C = = = = = = C ? ? ? = C ? ? ? = = = = = = = = C = = = T G C = = = = 0 X106 = = = = = = = = = = = = = = D A A G ? ? ? ? ? = = = = = = = = C A = A C T = = = = = = = A = = ? A T T A A ? = = = = = = = = = = = = = = I T G A ? ? ? ? ? = = = = = = = = G C = G G C = = = = = = = G = = ? G C C G G ? 0 X107 = = = = = = = = = = = = = = = A = = G C = = = C = = C C = G = C = C = ? = = A A = = A = G = = = G C C G G A = = = = = = = = = = = = = = = T = = A T = = = G = = A T = A = G = T = ? = = T G = = G = A = = = A T T A A G 0 X108 = = = ? = = = = = = = = = = ? = (G) = = (C) = = (G) = = = (C) = = = = = C = G G C = = = = = A G = = = C = = = G = ? = = = ? = = = = = = = = = = ? = (A) = = (T) = = (A) = = = (A) = = = = = A = A C T = = = = = G C = = = T = = = A = ? 0 X109 = = A ? = C C = C = = = = G = = = = = = = = = = = = = = C = = = = = = = = = ? = = = = = = = = = = = = = = = = = G ? = T T = A = = = = A = = = = = = = = = = = = = = A = = = = = = = = = ? = = = = = = = = = = = = = = = 0 X110 = ? = = = = = = = = = = = ? ? ? ? ? = = = = A = C = = = = = = C A = A C T = ? = = = = C = = = T = = = A = = = ? = = = = = = = = = = = ? ? ? ? ? = = = = G = T = = = = = = G C = G G C = ? = = = = G = = = C = = = G = = 0 X111 = = = = = C C = C = = = = G ? T G A = C = = G = T = C C = = = = C = G G C = = = = = A G = = = C = = = = = = = = = = = T T = A = = = = A ? A A G = T = = A = C = A T = = = = A = A C T = = = = = G C = = = T = = = = = = 0 X112 = = (A) (T) = (C) (C) ? (C) = = = = (G) I T G A = = = = G = T = = = = = = G C = G G C = = = = = ? G = = = C = = = G = = = = (G) (C) = (T) (T) ? (A) = = = = (A) D A A G = = = = A = C = = = = = = C A = A C T = = = = = ? C = = = T = = = A = = 0 X113 = = = = = C = = C T = A G G ? = G = = C = = G = T = C ? ? ? = = C = G G C = = = = = A G = = = C = C C G G A = = = = = T = = A G = G A A ? = A = = T = = A = C = A ? ? ? = = A = A C T = = = = = G C = = = T = T T A A G 0 X114 = I G ? = T = = A G = G A A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = D A ? = C = = C T = A G G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 X115 = = A ? = = C = = G = G A = ? A = = G C = = = C = = C C C G = C = C = = = = A A = = A = G = = = G C C G G A = = G ? = = T = = T = A G = ? T = = A T = = = G = = A T A A = G = T = = = = T G = = G = A = = = A T T A A G 0 X116 = = A = = C = = C = = A G G I T G A = = = = G = T = = = = = = G C = G G C = = = = = = G = = = C = = = G = = = = G = = T = = A = = G A A D A A G = = = = A = C = = = = = = C A = A C T = = = = = = C = = = T = = = A = = 0 X117 = = (A) (T) = C = = C T = A ? G = T G = ? ? = = G G T = = = = A = G C T = G C = ? G = = = G A = = C A T T = A G = = (G) (C) = T = = A G = G ? A = A A = ? ? = = A C C = = = = G = C A C = C T = ? A = = = C G = = T G C C = G A 0 X118 = = (A) ? = = = = ? ? = = = = ? ? ? ? = = = = = = = = = = = = = = A = A C T = = = = = G ? = = = T = = = A ? = = = (G) ? = = = = ? ? = = = = ? ? ? ? = = = = = = = = = = = = = = C = G G C = = = = = A ? = = = C = = = G ? = 0 X119 = = A ? = C C = C = = = = G ? = G = = C = = G = T = C C C = = = C = G G C = = ? = = A ? = = = C = = = G = = = = G ? = T T = A = = = = A ? = A = = T = = A = C = A T A = = = A = A C T = = ? = = G ? = = = T = = = A = = 0 X120 = = = = = C C = ? ? = = = G = = ? ? = C = = G = T = C C C = = = C = G G C = = ? = = A ? = = = C = = = G = = = = = = = T T = ? ? = = = A = = ? ? = T = = A = C = A T A = = = A = A C T = = ? = = G ? = = = T = = = A = = 0 X121 = ? = = = C = = C T = A G G = T G = A = = = G G T = = ? ? ? = G ? ? ? G C = T ? = = = ? A = = C A T T = A G = ? = = = T = = A G = G A A = A A = G = = = A C C = = ? ? ? = C ? ? ? C T = A ? = = = ? G = = T G C C = G A 0 X122 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = G G C = = ? = = A G ? = = C = = = G = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = A C T = = ? = = G C ? = = T = = = A = ? 0 X123 = = = ? = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = ? = = = G A = = C A ? T = ? G = = = ? = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = ? = = = C G = = T G ? C = ? A 0 X124 = = = ? = C = = C T = A G G ? T G = ? ? ? ? ? G T = = = = A = ? ? ? ? G C = ? ? = = = G A ? ? ? ? ? T = A ? = = = ? = T = = A G = G A A ? A A = ? ? ? ? ? C C = = = = G = ? ? ? ? C T = ? ? = = = C G ? ? ? ? ? C = G ? END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = ? ? ? = = = = = 1.00 = = = = ? ? ? ? = = = = = 1.00 = 1.00 = = 1.00 = 1.00 = = = = = = = 1.00 ? = 1.00 = = 1.00 1.00 1.00 = 1.00 = = ? ? 1.00 1.00 = = 1.00 1.00 = = 1.00 = = = = 1.00 = ? 1.00 = = 1.00 = 1.00 1.00 = 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 1.00 ? 1.00 1.00 = = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 0.76 ? = ? = 0.97 = = 0.97 0.97 = 0.97 0.97 0.97 = = 1.00 = = = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = 0.99 1.00 = 1.00 = = = 1.00 ? ? = 1.00 1.00 1.00 = 1.00 1.00 1.00 ? = 1.00 1.00 = = = = = = 1.00 = = = = = = = = 1.00 1.00 = = = 1.00 = ? ? ? = 1.00 ? ? ? 1.00 = 1.00 ? ? 1.00 1.00 = = = = = = = = = = = = = = = ? = = 0.56 = = = = = = = 1.00 1.00 = 1.00 = = = = = 1.00 = = = ? ? ? = 1.00 = = = 1.00 1.00 = 1.00 ? = 1.00 = = = ? ? = = = = = = = 1.00 = = = 1.00 = 1.00 = = = = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 1.00 = = = 1.00 = 1.00 = = 0.99 = = = = = = = = = = = = = 0.51 = = = 0.51 0.51 = 0.51 0.51 0.51 = = 1.00 ? = 1.00 0.89 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = 1.00 = = = 1.00 = 1.00 1.00 ? ? ? ? 1.00 = = = 1.00 = = = 1.00 1.00 ? 1.00 ? 1.00 = = = ? = = = = = = = = = = = = 1.00 = ? ? = = 1.00 = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 = ? ? ? 1.00 ? ? = ? ? = = = = 1.00 = = 0.66 = 0.66 ? 0.66 0.66 0.66 = 0.66 = = = 0.66 = = = ? ? = = = = = 1.00 = = = = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 = = = 1.00 ? ? = = 1.00 = = ? 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 = 1.00 = = ? 1.00 = = 1.00 = 1.00 1.00 = 1.00 = 1.00 = ? ? ? 1.00 = = 1.00 = = = = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 = = 1.00 1.00 = ? 1.00 = = = ? 0.51 = = = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 = 1.00 1.00 = = 1.00 = = = 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = = = = = 1.00 = 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 0.98 0.98 = 0.98 = = = = = = = = = ? ? ? 0.98 = ? ? ? = = 0.98 0.98 ? 0.98 0.98 = = = ? ? = = = = 0.98 = = = 0.68 = = = = = = = = = = = = 0.99 0.99 = 0.99 = = 0.99 0.99 = = = 0.99 = 0.99 = 1.00 = 1.00 = = = 1.00 = 1.00 = = 1.00 1.00 = = ? ? ? = = = = = = = = = = = = = 0.59 = = = 0.59 = = = 1.00 1.00 1.00 1.00 = = = = 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 = = 1.00 1.00 = 0.58 = = = 0.58 0.58 ? ? 0.58 0.58 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = 1.00 = = = = = 1.00 = = ? ? ? = = ? ? = = = ? 1.00 ? = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = = 1.00 = = = 1.00 = 1.00 1.00 = = = 1.00 = = 1.00 = ? = = = 1.00 = = ? = ? = = = ? ? = = = ? ? = ? = = = = = = = 1.00 ? ? = = = = ? ? ? ? = = = = 1.00 = = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 ? = ? ? = = = 0.61 = = = = 0.59 0.59 ? ? = = = = = = = = = = = = = = = 0.76 = 0.76 = 0.76 = = = 0.76 = 0.76 = = = 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = = = = = = = = = = = 0.99 = = = = = = = 0.99 = = 0.71 = = = 0.71 0.71 0.71 = 0.71 = = = 0.71 0.71 = = = = = = = = = = = = = ? ? ? 0.93 = ? ? ? = = = 0.93 = 0.93 = = = = = = = 0.89 0.89 0.89 0.89 0.89 ? = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = 0.61 = = = 0.61 = = = = 0.61 = 0.61 = = 0.78 0.78 0.78 0.78 = = = = 0.78 = = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = 0.93 0.93 = 0.93 = = 0.93 0.93 = 1.00 = 0.93 = 0.93 1.00 = 1.00 = = = = = = = 1.00 = = 1.00 1.00 = = = = = = = ? ? = = = ? ? = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 1.00 = = 1.00 = = 1.00 = = 1.00 1.00 = 1.00 1.00 0.91 0.91 0.91 = = = = = 0.68 0.68 0.68 = = 0.68 0.68 = 0.68 0.68 = = = ? = = 0.99 = = = = 0.99 0.99 = = = ? ? = 1.00 = = = = = = 1.00 = = = 1.00 1.00 = = = = 0.99 0.65 0.64 = = 0.64 = = = = = = = = = 0.64 = = = ? ? 0.66 = = 0.60 = = = = = = = ? = 1.00 = = 1.00 = = 1.00 = = = 1.00 = = = = = 1.00 = 1.00 = 1.00 1.00 = = 1.00 = = = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 = ? ? ? = = = = = = = = = = = = = = = = 1.00 = = = 1.00 ? = = = = = ? = = = = = = = = = = 0.63 = = = ? = = = = = = = = = 0.63 = = ? ? ? = = ? ? ? = 0.57 ? = = = = = = ? ? ? 1.00 1.00 1.00 1.00 = 1.00 ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = ? = = = = = ? ? = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = = = ? ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = ? ? ? = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 = 1.00 = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = = = = 0.99 = = 0.99 0.99 = = 0.99 0.99 0.99 = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = ? ? ? = = ? ? ? = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = = = = 1.00 = = = ? ? ? = = = = = = = = 1.00 1.00 = = = = 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? ? = ? = 0.98 0.98 0.98 = 0.98 = = 0.98 0.98 0.98 0.98 0.98 0.98 = 1.00 1.00 = 1.00 = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = = = = = = = = = = 0.59 ? 0.94 ? 0.94 = = = = ? 0.94 = = = = 0.94 = = 0.94 0.94 = = = = 0.94 = = = = = 0.94 = = = 0.94 = = = = 1.00 = = = 0.66 = 0.66 = = = 0.66 0.66 0.66 0.66 0.66 0.66 = 0.69 0.69 0.69 = 0.69 = = 0.69 0.69 = 0.69 0.69 0.69 = 1.00 ? ? 1.00 = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 1.00 = = 1.00 = = = = 1.00 = = = = = 1.00 = = ? ? ? = = = 1.00 ? = = = = 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 0.97 = 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 1.00 1.00 = = = = 1.00 = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 = = ? = = = = = = = = = 1.00 = = = = = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 ? ? 1.00 1.00 = 1.00 = = = 1.00 1.00 = = = ? ? ? = 1.00 ? ? ? 1.00 1.00 = 1.00 1.00 = = = = = = = = = 1.00 1.00 1.00 = = = ? = = = = = = = = 1.00 = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = ? = = = = ? = = = = = = 0.84 = = = ? = = = = = = = = = 0.85 = = = = = = = = = = = 0.90 = = = = = 0.99 = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.97 = = = 0.97 = = = = = ? ? = = = = = = 0.97 = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = = = = = = = = = ? 1.00 1.00 = 1.00 = = = 1.00 = 1.00 = = = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = ? = = = = = = = = = = = = 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = ? ? ? 1.00 1.00 = = = = = = 0.94 0.94 = ? 0.94 0.94 0.94 0.94 = 0.94 0.94 = = = ? = 0.98 = = 0.98 0.98 = 0.98 0.98 0.98 = = 1.00 = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 0.69 = = 0.81 1.00 = 1.00 1.00 1.00 = = = = = 1.00 1.00 = ? ? 1.00 = = = 1.00 = = = 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 = = 1.00 = = ? ? = 1.00 1.00 1.00 = = = = = = = = = 1.00 = = = 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 = = = = = = 0.99 0.99 = = 0.99 0.99 0.99 0.99 = 0.99 0.99 = ? 1.00 1.00 = 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = 0.89 = = = = 0.53 = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = ? ? = = = = = ? 1.00 = = 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 ? = = = = = = = = 1.00 = = = 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 = = = = = = 0.98 0.98 = = 0.98 0.98 0.98 0.98 = 0.98 0.98 = ? 1.00 1.00 = 1.00 = = 1.00 1.00 = 1.00 1.00 ? ? = 1.00 = = = = = 1.00 = 1.00 = = = 1.00 1.00 1.00 = ? ? ? 1.00 = 1.00 1.00 = 1.00 = = = 1.00 1.00 1.00 ? 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 = 1.00 = ? ? 1.00 1.00 = 1.00 = = = 1.00 1.00 = = = ? ? ? = 1.00 ? ? ? 1.00 1.00 = 1.00 1.00 = = = = = = = ? = = = = = = = = = 1.00 = = = = = = = = = = = 1.00 1.00 = 1.00 = = = 1.00 = 1.00 = = = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 0.99 0.99 0.99 = = = = = = = = = = = 1.00 = = 1.00 1.00 = = = 1.00 = = 1.00 1.00 = 1.00 = = = 1.00 = = = = 1.00 1.00 = = = = = = = ? ? = = = = 0.52 = = = = = = 0.99 0.99 = = = = = = = = 1.00 = = 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 = = = = = = 0.97 0.97 = = 0.97 0.97 0.97 0.97 = 0.97 0.97 = = = ? = = = = = = 0.96 = = = ? = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 0.92 ? 1.00 = = = = = = 0.97 = ? ? 0.98 = = = = = ? ? = = = = = = 1.00 = = 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 ? ? 1.00 = = = 1.00 1.00 = = = ? ? ? = 1.00 ? ? ? 1.00 0.99 = 1.00 1.00 = = = = = = = = = = = = = = 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 = = = 1.00 1.00 = = 1.00 = ? ? ? ? ? = 1.00 1.00 = 0.99 = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 = = ? 1.00 1.00 1.00 = 1.00 1.00 = ? 0.95 0.95 = 0.99 = = 0.99 0.99 = 0.99 0.99 0.99 = 1.00 1.00 = 1.00 = = = 1.00 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = 0.96 = = = = = = = = = = = = = 0.96 = = = = = = = = = = = = = = 0.77 = = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = 0.95 = = 0.95 0.95 = 0.95 0.95 0.95 = = 1.00 = = 1.00 = = 1.00 = = = 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = ? 0.84 ? = = = = ? ? ? ? ? = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = ? = = = = = = = = = = = = 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 = = = = = 0.57 = = = = = = 0.86 0.86 = 0.86 0.86 = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = ? ? ? ? ? = 1.00 1.00 = 1.00 = 1.00 = = = = = = 1.00 ? ? ? = 1.00 ? ? ? = = = = = = = = 1.00 = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 ? ? ? ? ? = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = 0.99 = = ? 0.99 0.99 0.99 0.99 0.99 ? = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = = = 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 = ? = = 1.00 1.00 = = 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = ? = = = = = = = = = = ? = 0.60 = = 0.60 = = 0.60 = = = 0.60 = = = = = 1.00 = 1.00 1.00 1.00 = = = = = 0.91 0.91 = = = 0.91 = = = 0.91 = ? = = 1.00 ? = 1.00 1.00 = 1.00 = = = = 1.00 = = = = = = = = = = = = = = 0.98 = = = = = = = = = ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? ? ? ? ? = = = = 1.00 = 1.00 = = = = = = 1.00 1.00 = 1.00 1.00 1.00 = ? = = = = 1.00 = = = 1.00 = = = 1.00 = = = = = = = 0.93 0.93 = 0.93 = = = = 0.93 ? 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 1.00 = = = 1.00 = = = = = = = = 0.60 0.60 = 0.60 0.60 ? 0.60 = = = = 0.60 1.00 1.00 1.00 1.00 = = = = 1.00 = 1.00 = = = = = = 1.00 1.00 = 1.00 1.00 1.00 = = = = = ? 1.00 = = = 1.00 = = = 1.00 = = = = = = = 0.99 = = 0.99 0.99 = 0.99 0.99 0.99 ? = 1.00 = = 1.00 = = 1.00 = 1.00 = 1.00 ? ? ? = = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 ? = 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 ? = = 1.00 = = 1.00 = 1.00 1.00 = ? 1.00 = = 1.00 1.00 = = = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = 1.00 1.00 = = 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = 0.96 = = 0.96 = = 0.96 = = 0.96 0.96 0.96 1.00 1.00 1.00 1.00 = = = = 1.00 = 1.00 = = = = = = 1.00 1.00 = 1.00 1.00 1.00 = = = = = = 1.00 = = = 1.00 = = = 1.00 = = = = 0.62 0.62 = 0.98 = = 0.98 0.98 = 0.98 ? 0.98 = 1.00 1.00 = ? ? = = 1.00 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = ? 1.00 = = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = 0.88 ? = = = = ? ? = = = = ? ? ? ? = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 ? = = = 1.00 = = = 1.00 ? = = = 1.00 ? = 1.00 1.00 = 1.00 = = = = 1.00 ? = 1.00 = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 = = ? = = 1.00 ? = = = 1.00 = = = 1.00 = = = = = = = 1.00 1.00 = ? ? = = = 1.00 = = ? ? = 1.00 = = 1.00 = 1.00 = 1.00 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 = = ? = = 1.00 ? = = = 1.00 = = = 1.00 = = = ? = = = 0.98 = = 0.98 0.98 = 0.98 0.98 0.98 = 1.00 1.00 = 1.00 = = = 1.00 1.00 1.00 = = ? ? ? = 1.00 ? ? ? 1.00 1.00 = 1.00 ? = = = ? 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = = ? = = 1.00 1.00 ? = = 1.00 = = = 1.00 = ? = = = ? = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = ? = = = 1.00 1.00 = = 1.00 1.00 ? 1.00 = ? 1.00 = = = ? = 0.98 = = 0.98 0.98 = 0.98 0.98 0.98 ? 1.00 1.00 = ? ? ? ? ? 1.00 1.00 = = = = 1.00 = ? ? ? ? 1.00 1.00 = ? ? = = = 1.00 1.00 ? ? ? ? ? 1.00 = 1.00 ? END PHASEPROBS