PCNA Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
TGTCCATCCT GTAACAATTG AAAATTTCT
G
G
C
T
G
G
G
C
G
T
G
G
T
G
G
C
T
C
A
C
G
50 |
REPEAT
C
C
T
G
T
A
A
T
C
C
C
A
G
C
A
C
T
T
T
G
A
G
A
G
G
C
C
G
A
G
G
C
A
G
G
T
G
G
A
T
C
A
C
C
T
C
A
G
G
T
100
C
A
G
G
T
G
T
T
C
A
A
G
A
C
C
A
G
C
C
T
G
G
C
C
A
A
C
A
T
G
G
T
G
A
A
A
C
C
C
C
G
T
C
T
C
T
A
C
T
A
150 |
var(149):[C:0.01]
A
A
A
A
A
A
A
A
T
A
A
T
A
A
T
A
A
T
A
A
T
A
C
A
A
A
A
A
T
T
A
G
C
C
G
G
G
G
G
T
G
G
T
G
G
T
A
G
G
C
200 |
var(188):[C:0.21]
A
C
C
T
G
T
A
A
T
C
C
C
A
G
A
T
A
C
T
C
G
G
G
A
G
G
C
T
G
A
G
G
C
A
G
G
A
G
A
C
T
C
A
C
T
T
G
A
A
C
250
C
T
G
G
G
A
G
G
C
G
G
A
G
G
T
T
G
C
A
A
T
G
A
G
C
T
G
A
G
A
T
C
G
C
G
C
C
A
C
T
G
T
A
C
T
C
C
A
G
C
300
C
T
G
G
A
T
G
A
C
A
G
A
G
C
A
G
G
A
C
T
C
C
A
T
C
T
C
A
A
A
A
A
G
A
A
A
G
G
A
A
A
A
G
A
A
A
A
G
A
A
350
A
A
AATATTAA ATGTGTACGC TCTTTGACTC AGCTGTATTA CTTCAAGGAG
400
TTGATATCAC CAAAATTGCC TAAGTGCTCA AAGGTGTTTG TAGTTAAACA
450
ACAGGAGATT GATAAATTAT GTTATATACA TGTGATGCTA TGTTTTAAAG
500
AGGTACTGAT ATGATAAAAG ATGTACGTGG CATAAAATTA AATGTACTTT
550
ATTAAGTACT TTTCCAAGTG TTTACGGAAT GAGTGCATTT TTGAAAAAAA
600
AAAAGTGTAT TCGAACTTTT AAAAAAGCTT TAAAAGCTTT ATACAA
T
GAA
650 |
var(647):[C:0.03]
CGATTGAGTG ATTATAAGAG CTGGCGGGGG AATGTTAAGA GGATGATAGG
700
GAGCTAAGTT TAACAGAACA ATTCACCTCT TTATCTTGTG ACACCTACGA
750
GCGCATCAAT TCTGTAATTG AAAAATAAAG TGCATATTTG CAGCAGCTGT
800
ACTCT
C
T
TCA GGCTGCAAGG AGGCTTTTCC TCCCGGTAGG CTTGATTTGC
850 |
var(806):[-:0.10]
ATTTCACTTT CACTTTCGTG GCTGGAAACT TTCTACCCAC GTAGTGGGAG
900
GCTGAGGAGC CACCATAAAG CTGGGGCTTG ACGAGCCGGG ACCGGGACCC
950
GATCTCCACA TATGCCCGGA CTTGTTCTGC GGCCGGGTTC AGGAGTCAAA
1000
GAGGCGGGGA GACCTGCGCG ACGCTGCCCC GCCCTGCGCC CGCTTCCTCC
1050
AATGTATGCT CTAGGGGGCG GGCCTCGCGG GGAGCATGGA CACGATTGGC
1100
CCTAAAGTCT TCCCCGCAAG GCCGTGGGCT GGACAGCGTG GTGACGTCGC
1150
AACGCGGCGC AGGGTGAGAG CGCGCGCTTG CGGACGCGGC GGCATTAAAC
1200
GGTTGCAGGC GTAGCAGAGT GGTCGTTGTC TTTCT
A
G
G
T
C
T
C
A
G
C
C
G
G
T
C
1250 | Exon 1 |
UTR
G
T
C
G
C
G
A
C
G
T
T
C
G
C
C
C
G
C
T
C
G
C
T
C
T
G
A
G
G
C
T
C
C
T
G
A
A
G
C
C
G
A
A
A
C
C
A
G
C
T
1300
A
G
A
C
T
T
T
C
C
T
C
C
T
T
C
C
C
G
C
C
T
G
C
C
T
G
T
A
G
C
G
G
C
G
T
T
G
T
T
G
C
C
A
C
T
C
C
G
C
C
1350
A
C
C
A
T
G
T
T
C
G
A
G
G
C
G
C
G
C
C
T
G
G
T
C
C
A
G
G
G
C
T
C
C
A
T
C
C
T
C
A
A
G
A
A
G
G
T
G
T
T
1400
M F E A R L V Q G S I L K K V L 16
G
G
A
G
G
C
A
C
T
C
A
A
G
G
A
C
C
T
C
A
T
C
A
A
C
G
A
G
G
C
C
T
G
C
T
G
G
G
A
T
A
T
T
A
G
C
T
C
C
A
1450
E A L K D L I N E A C W D I S S 32
G
C
G
G
T
G
T
A
A
A
C
C
T
G
C
A
G
A
G
C
A
T
G
G
A
C
T
C
G
T
C
C
C
A
C
G
T
C
T
C
T
T
T
G
G
T
G
C
A
G
1500
S G V N L Q S M D S S H V S L V Q 49
C
T
C
A
C
C
C
T
G
C
G
G
T
C
T
G
A
G
G
G
C
T
T
C
G
A
C
A
C
C
T
A
C
C
G
C
T
G
C
G
A
C
C
G
C
A
A
C
C
T
1550
L T L R S E G F D T Y R C D R N L 66
G
G
C
C
A
T
G
G
G
C
G
T
G
A
A
C
C
T
C
A
C
C
A
G
GTGAGC CTCGCGGC
C
C CGGGAAGCCG
1600 |
var(1589):[G:0.12]
A M G V N L T S 74
GCCCCGGCCC GC
C
TGCACCT CCGGTGCTTG GCGGGAGCGC TTTCGAGCCT
1650 |
var(1613):[A:0.14]
AGCCCTCATT GGCTGGCGTG GGCCATCCGC GCCTTCTCAT TGGCCTGCCA
1700
CGCAGTGGGG TGGGGCCCAG CTGAGCGCGC GGTTCGGAAA AGCCCGCGCT
1750
GGCTGCTGCG CGAACCTGCT TTTTCGCGCC AAAGTCACAA AGCGGGTGGT
1800
GGCGGGAAA
A
TCAAGGGTTT TTCCGCAGTG CCAGGAACAC TGTTCCAGGG
1850 |
var(1810):[G:0.13]
CTCTTTGCTC ACTAAATCCT GTTGGCCTTG AATGGACGCT TTAGCTGTGG
1900
C
T
T
T
C
T
T
G
T
T
T
C
T
G
A
G
A
C
G
G
T
C
T
C
G
G
T
G
T
G
T
T
G
C
C
C
G
G
G
C
T
G
G
T
C
T
C
C
A
A
1950 |
REPEAT
C
T
T
C
T
G
G
G
C
T
C
A
A
G
C
G
A
T
C
C
T
C
C
C
G
G
C
T
C
A
G
T
C
GCGGTTG ACTTTAAATG
2000
CTTTATAATG CCCTTGCGAG AAATGTGGCA GCCTGTCATC CTACTTAGTG
2050
GCAGGAGATT GTTTCTATCC AGAAGGGACA CTGCTGGTGG TATTTTAGTA
2100
TAAATACTGC CAGATGCGTC CCAAAACGTC TGCATTAATA ATGGCATCCT
2150
CCAGCAGTCC G
C
TTACCCTC CACCAGTTCT GAGACGGCCT GATGGGTGAG
2200 |
var(2162):[T:0.38]
AGTGGTAACC CCTTCTAACC GCGTTCGAAA TACAGCCCTT CAGCAGACGG
2250
CGTTGATTTT AAAGCATGTG TCTCCTGTCT T
C
TAG
T
A
T
G
T
C
C
A
A
A
A
T
A
C
T
2300 |
var(2282):[T:0.12]
| Exon 2
M S K I L 79
A
A
A
A
T
G
C
G
C
C
G
G
C
A
A
T
G
A
A
G
A
T
A
T
C
A
T
T
A
C
A
C
T
A
A
G
G
G
C
C
G
A
A
G
A
T
A
A
C
G
2350
K C A G N E D I I T L R A E D N 95
C
G
G
A
T
A
C
C
T
T
G
G
C
G
C
T
A
G
T
A
T
T
T
G
A
A
G
C
A
C
C
A
A
GTAAGTC GTACCTTTTT
2400
A D T L A L V F E A P 106
ACCGAGTCAC GAAGCTACAG AAAATCAAAA CTCTGTGTCA GTATTTCTCA
2450
AAAGCATCTG CTTTCTTTTG GTAG
A
C
C
A
G
G
A
G
A
A
A
G
T
T
T
C
A
G
A
C
T
A
T
G
A
A
2500 | Exon 3
N Q E K V S D Y E 115
A
T
G
A
A
G
T
T
G
A
T
G
G
A
T
T
T
A
G
A
T
G
T
T
G
A
A
C
A
A
C
T
T
G
G
A
A
T
T
C
C
A
GTGAGTAT
2550
M K L M D L D V E Q L G I P 129
CAGTTTCTCA TTGTAGAGAG TGCTGTACAC AGGCACGATA GTTATGTCAT
2600
AGAATG
T
T
T
G
T
T
T
A
T
T
T
T
T
A
C
A
G
A
C
A
G
G
G
T
C
T
T
G
G
C
T
C
T
G
T
T
G
C
C
C
A
G
G
C
2650 |
REPEAT
T
G
G
A
G
T
G
C
A
G
T
A
G
T
G
C
C
A
T
A
T
A
G
C
T
C
T
C
T
C
T
A
A
C
C
T
G
G
G
A
T
T
C
C
T
G
G
G
C
T
2700
C
A
A
G
C
A
G
T
C
C
T
C
T
T
G
C
C
T
T
A
G
T
C
T
C
C
T
A
A
G
T
G
G
C
T
A
G
G
A
A
G
G
A
C
T
A
C
G
G
G
2750
C
C
T
G
T
C
C
C
A
C
C
A
C
A
C
C
T
G
G
C
T
A
A
T
T
T
T
T
T
C
A
T
T
T
T
T
G
T
G
T
G
T
G
G
G
C
G
T
G
G
2800
G
G
G
C
A
G
T
C
T
T
G
C
C
C
A
G
G
C
T
G
G
T
C
T
G
G
A
A
C
T
C
C
T
G
G
C
C
T
C
A
A
G
T
G
A
T
C
C
T
C
2850 |
var(2805):[G:0.07]
C
TCCGTCAAG ATATGTTAAT ATAATTTAAG CCTACTTCAT AACAACTTTT
2900
TCTAGAAATA TATCTACTGG TGCATGTTTC AAAGAGAGAT TTTAGTATTT
2950
GGATAGTTGT TCACCACAAG TCTAAAACTC ACAGGTTAAA TTTAT
T
GTTT
3000 |
var(2996):[C:0.01]
ACTGCCAGTT GTCTATTTGC ATTAACTTCC ATGAACCTCT TTTAAAAT
T
T
3050 |
var(3049):[G:0.01]
GTTTCCTTCT AGAATGCTTG CTTTTTATTA AGTGGATTTT AAAGCTGACT
3100
TGGAAGAAAT TTATCCAGGT TAGGTTTATA AACACCAAAG GAGAGAAGAA
3150
ATGTTTGAAT GTTGAAAATG CCTAATATAT TCTCTTGCTT TCTTTTAGAA
3200
AGTAGTTAGG CCTGCTTGCG CCATCATGAT TTCTGTGCCA TACTCTAATG
3250
TTCTCTTACT TTATCCCTGG AGGATGAGGA GGAGGAGGCT CTTGTTCCCT
3300
GGATGGTGCA TTTAATAGCC ATTTATTTTT TTGAGTGGAG TTTGTTAAGA
3350
AATTAC
G
CAA GTCATATTTT AAAGTAATCA GAAAATA
T
TG ATTCTGAGTT
3400 |
var(3357):[A:0.01]
|
var(3388):[C:0.02]
GTTTAG
G
TGT TGCCTTTTAA GAAAGTGAGG GTGCCAAATC ATTAAATTTC
3450 |
var(3407):[A:0.22]
TAACAATTAA CTTTTGGAAA ATTTTTGTTC TTAATAG
G
A
A
C
A
G
G
A
G
T
A
C
A
3500 | Exon 4
E Q E Y 133
G
C
T
G
T
G
T
A
G
T
A
A
A
G
A
T
G
C
C
T
T
C
T
G
G
T
G
A
A
T
T
T
G
C
A
C
G
T
A
T
A
T
G
C
C
G
A
G
A
T
3550
S C V V K M P S G E F A R I C R D 150
C
T
C
A
G
C
C
A
T
A
T
T
G
G
A
G
A
T
G
C
T
G
T
T
G
T
A
A
T
T
T
C
C
T
G
T
G
C
A
A
A
A
G
A
C
G
G
A
G
T
3600
L S H I G D A V V I S C A K D G V 167
G
A
A
A
T
T
T
T
C
T
G
C
A
A
G
T
G
G
A
G
A
A
C
T
T
G
G
A
A
A
T
G
G
A
A
A
C
A
T
T
A
A
A
T
T
G
T
C
A
C
3650
K F S A S G E L G N G N I K L S 183
A
G
A
C
A
A
G
T
A
A
T
G
T
C
G
A
T
A
A
A
G
A
G
G
A
G
G
A
A
G
C
T
GTAAGTAG TTTTTAAGTA
3700
Q T S N V D K E E E A 194
AAAAGAAAAT AGTTTGAAGA GAATTATAAT AC
T
GCTTATT AGGTTAATTG
3750 |
var(3733):[C:0.01]
CTAAAATTAA AAGTAGACAG AATTGGATCC CAAGTAATTT CTGAAAATTG
3800
AGATACTGTT GAAATCTGCG A
A
TGATTTAT AAGTGTCATC CAATTTAGAA
3850 |
var(3822):[C:0.22]
TTATATTTGC AAGAAGGGAA TACAAATTCA GCACGTGTAC ATACCACAGA
3900
ACAGTGGTTT ATGGATCAAG TCCACACCGG CTCTTAAGGG TAGGATTGGG
3950
AAGTTAGGC
G
TATAACCTTT AGCTTTCTGG AGATACTTAC TCTCTTACCA
4000 |
var(3960):[-:0.13]
AATAATTGAG CATAGGACAG CAGCTCAATA GAAGGATATG GTTAGGAGTA
4050
AAAGTCTACC TGTTTGGAGC
A
C
T
T
A
T
G
T
A
A
T
C
C
T
A
A
T
A
T
T
A
G
C
T
T
A
C
A
T
G
4100 |
REPEAT
T
T
G
T
G
G
G
T
C
C
A
A
T
T
G
G
T
A
G
C
C
C
A
T
T
T
T
A
A
A
G
G
T
G
G
A
G
A
A
G
C
A
G
G
C
T
G
A
G
C
4150
A
A
C
C
T
T
A
A
G
T
G
A
C
A
A
T
T
T
A
G
C
C
A
A
A
G
T
C
A
C
A
GGCTGTAGG AATCAAAGGT
4200
TAAACAGGAA GGAGACTTCT CACTAAGGCT AGAAAGCAGA CTCCATGCAA
4250
CTTTGAGAGT ACCTAGAGAG CCCTTGTTTA ACCAAAATAG AAAG
A
A
C
A
T
G
4300 |
REPEAT
G
C
A
A
A
A
C
C
C
C
A
T
C
T
C
T
A
C
T
A
A
A
A
A
T
A
T
A
A
A
A
A
T
T
A
G
C
C
G
G
G
T
G
T
G
G
T
G
G
C
4350
G
C
A
C
A
C
C
T
G
T
A
A
T
C
C
C
A
G
C
T
A
C
T
T
G
G
A
A
T
G
C
T
G
A
G
A
T
G
G
G
A
G
A
A
T
G
A
C
T
T
4400
G
A
A
C
C
G
A
G
G
A
G
G
C
G
G
A
G
G
T
T
G
C
A
G
T
G
A
G
C
C
C
A
G
A
T
C
A
T
G
C
C
A
C
T
C
C
C
C
T
C
4450
C
A
G
C
C
T
G
G
G
T
G
A
C
A
G
A
G
C
A
A
G
A
T
T
C
C
A
T
C
T
T
A
A
A
C
A
A
A
C
A
A
A
A
A
A
A
A
CTC
4500 |
var(4471):[A:0.01]
|
var(4475):[T:0.08]
|
var(4493):[C:0.01]
G
CTAACCTGG GCATAAATTA AAAC
T
T
T
G
T
A
A
A
T
C
A
A
G
G
A
C
A
A
A
G
G
T
C
C
T
A
4550 |
var(4501):[A:0.01]
|
REPEAT
A
C
C
T
C
A
T
A
A
C
C
T
T
G
T
T
A
G
G
A
T
T
A
A
A
T
A
C
G
G
T
A
G
C
A
T
T
A
A
A
G
A
G
C
T
T
A
G
C
A
4600
T
A
T
G
C
T
G
T
G
T
G
T
G
G
C
A
T
A
T
T
A
T
A
A
G
C
T
T
A
C
A
A
T
A
A
A
T
A
C
T
A
T
A
T
A
T
T
GCT
4650
CTCTTGTCCC TTGAATGGGT AGTCAACATT TAGTTTAAAT AAAGGTAAAA
4700
TTCAGTTGAA AGGTTTTTTT TTAAATTAAT AAAGTCTAGG AGCTGATTCT
4750
TTATCTGTTT CCTGAATCAC ATTTCCACTC CTGCCAACCT CGT
T
T
T
T
T
T
C
4800 |
REPEAT
T
T
T
T
T
C
T
G
T
T
T
T
T
C
T
T
T
G
T
T
T
T
T
G
A
G
A
C
A
G
G
G
T
C
T
T
G
C
T
C
T
G
T
C
C
A
C
C
C
A
4850
G
G
C
T
G
G
A
G
T
G
C
G
G
T
G
G
T
G
C
A
G
T
C
G
G
T
T
C
A
C
T
A
C
A
G
C
C
T
C
A
A
A
C
T
C
C
A
G
G
G
4900 |
var(4873):[T:0.14]
C
T
T
A
A
G
T
G
A
T
C
C
T
C
C
T
G
C
C
T
C
A
G
T
T
T
C
C
C
A
A
G
T
A
G
C
C
G
G
G
A
C
T
A
C
A
G
G
T
G
4950 |
var(4922):[G:0.06]
|
var(4937):[T:0.14]
|
var(4948):[A:0.01]
T
G
T
G
C
C
A
A
C
A
C
A
C
C
T
A
G
C
CT GGTTTCCCCT AATTTCATTT TCCCCCTTCC
5000
A
T
T
A
C
A
A
T
C
T
A
T
T
T
G
T
T
G
A
A
G
A
A
A
T
T
A
G
A
T
C
A
T
T
T
A
T
T
A
A
G
T
T
T
T
C
C
A
G
A
5050 |
REPEAT
G
T
T
T
G
G
A
T
T
T
T
G
C
T
G
A
T
T
G
C
A
T
T
C
C
T
G
T
G
T
A
T
A
C
A
T
A
A
A
T
T
C
C
T
C
T
A
C
C
C
5100 |
var(5095):[T:0.01]
T
G
T
G
T
G
T
C
C
T
A
C
A
G
A
C
T
G
G
T
A
G
C
T
A
T
A
G
C
C
C
T
G
G
A
G
C
C
T
T
G
A
T
A
T
T
C
A
G
G
5150
G
T
G
T
T
T
T
G
T
T
T
C
G
G
G
G
G
T
G
A
G
A
G
A
G
C
A
A
G
A
A
T
A
T
A
G
G
T
G
G
T
G
G
T
G
T
G
T
G
C
5200
C
T
C
T
A
G
T
A
G
G
A
G
G
C
A
C
A
G
G
G
T
G
T
C
T
G
G
A
T
G
T
G
T
T
T
G
C
A
A
T
G
T
T
A
G
C
A
G
C
T
5250
A
T
A
A
T
A
G
T
C
A
T
T
G
T
C
T
A
G
A
T
C
C
A
T
T
A
A
G
T
C
A
T
T
A
A
T
T
A
G
A
G
T
T
T
G
C
A
G
A
G
5300
C
T
G
A
A
A
T
T
A
A
T
A
C
G
T
T
T
T
A
T
T
C
A
C
T
T
A
T
T
G
G
C
T
G
C
T
T
A
T
T
A
G
A
A
A
A
A
C
T
T
5350 |
var(5328):[C:0.04]
C
C
A
T
A
A
A
G
A
A
A
A
G
C
T
T
T
C
C
C
A
T
A
T
T
A
T
A
T
A
A
T
T
T
G
G
T
T
A
T
C
T
A
A
A
T
T
A
T
A
5400
G
C
T
A
T
A
G
G
A
A
A
G
A
C
A
A
G
C
T
A
G
A
T
A
A
T
C
G
A
G
T
C
T
T
T
T
G
C
T
T
T
A
T
G
T
A
T
C
A
G
5450
T
C
T
T
C
A
A
A
A
T
T
T
T
C
A
T
A
G
C
T
C
C
C
T
C
C
A
A
A
G
T
G
A
C
C
A
A
T
AC AAGTGTTTGT
5500
GGGTTTTTAT AAATATATAA TGAGCTAATA GATTGCAACT TTCTTGATGT
5550
TTTTCAATGA TGAATCTTTT GTTTTGTAG
G
T
T
A
C
C
A
T
A
G
A
G
A
T
G
A
A
T
G
A
A
5600 | Exon 5
V T I E M N E 201
C
C
A
G
T
T
C
A
A
C
T
A
A
C
T
T
T
T
G
C
A
C
T
G
A
G
G
T
A
C
C
T
G
A
A
C
T
T
C
T
T
T
A
C
A
A
A
A
G
C
5650
P V Q L T F A L R Y L N F F T K A 218
C
A
C
T
C
C
A
C
T
C
T
C
T
T
C
A
A
C
G
G
T
G
A
C
A
C
T
C
A
G
T
A
T
G
T
C
T
G
C
A
G
A
T
G
T
A
C
C
C
C
5700 |
var(5699):[G:0.01]
T P L S S T V T L S M S A D V P 234
T
T
G
GTAAGAT AATAAATTTG AACCTTGTTT TGTAGGTAGT CATATGTGAT
5750
L 235
ACATACTCCT CAGTAATTAA CCATCTTCCT GTCTTTCAG
T
T
G
T
A
G
A
G
T
A
T
5800 | Exon 6
V V E Y 239
A
A
A
A
T
T
G
C
G
G
A
T
A
T
G
G
G
A
C
A
C
T
T
A
A
A
A
T
A
C
T
A
C
T
T
G
G
C
T
C
C
C
A
A
G
A
T
C
G
A
5850
K I A D M G H L K Y Y L A P K I E 256
G
G
A
T
G
A
A
G
A
A
G
G
A
T
C
T
T
A
G
G
C
A
T
T
C
T
T
A
A
A
A
T
T
C
A
A
G
A
A
A
A
T
A
A
A
A
C
T
A
A
5900 |
UTR
D E E G S 261
G
C
T
C
T
T
T
G
A
G
A
A
C
T
G
C
T
T
C
T
A
A
G
A
T
G
C
C
A
G
C
A
T
A
T
A
C
T
G
A
A
G
T
C
T
T
T
T
C
T
5950
G
T
C
A
C
C
A
A
A
T
T
T
G
T
A
C
C
T
C
T
A
A
G
T
A
C
A
T
A
T
G
T
A
G
A
T
A
T
T
G
T
T
T
T
C
T
G
T
A
A
6000
A
T
A
A
C
C
T
A
T
T
T
T
T
T
T
C
T
C
T
A
T
T
C
T
C
T
G
C
A
A
T
T
T
G
T
T
T
A
A
A
G
A
A
T
A
A
A
G
T
C
6050 |
var(6018):[T:0.06]
|
var(6027):[C:0.12]
C
A
A
A
G
T
C
A
G
A
T
C
T
G
G
T
C
T
A
G
T
T
A
A
C
C
T
A
G
A
A
G
T
A
T
T
T
T
T
G
T
C
T
C
T
T
A
G
A
A
6100
A
T
A
C
T
T
G
T
G
A
T
T
T
T
T
A
T
A
A
T
A
C
A
A
A
A
G
G
G
T
C
T
T
G
A
C
T
C
T
A
A
A
T
G
C
A
G
T
T
T
6150
T
A
A
G
A
A
T
T
G
T
T
T
T
T
G
A
A
T
T
T
A
A
A
T
A
A
A
G
T
T
A
C
T
T
G
A
A
T
T
T
C
A
A
A
C
ATCAC
6200
AG
G
GCAGTGT CTTCATTTTG ACCAGGACTG TTGGAAGTAT CCTACTGAAT
6250 |
var(6203):[A:0.03]
TCCCAGCTAC AGCTACCCTT TCGTTTAAAT GGTTTTTCAG TTTAGAGCAG
6300
CCTGATGGAG ATCAAAAGGA TTTCAAATAC AGTAGGTTAC TAGATATTTT
6350
AGGGGATTCA CTTGTCAAAC TTGTTATTCC AATTTGAGCT CAAGGAACAA
6400
GTGAGAGAGT AGTACAAATC CTGTGTATTT CATTTTA
C
TT GGCAAAAATT
6450 |
var(6438):[T:0.13]
AATACTCTTC AGAAGCTTAA TGTACC
C
AAA GTCGTGTGGG CTTTATAAGA
6500 |
var(6477):[G:0.48]
TGTTAATGGA GTGTTTCTTT TTAGCCTGGG GAATCTTACA AGAGTCTTGG
6550
ATGTTTCAGT AGAGCTGTAA TGG
G
GCCCAA GGAGTATGGT TGTACAAAAT
6600 |
var(6574):[A:0.12]
TTCTCTAGTA TAAGTACACT TTGCAACTTC ACTCAAAGGA TGAAGATGTC
6650
TTAAATTCCA
C
GGATGTTGG ATCCAACCAA GAAAGTGAAA AAGCCCTGA
A
6700 |
var(6661):[T:0.12]
|
var(6700):[C:0.01]
GTTGTGAAGA AAGACTTAAA AACATTCCCA CTAATAGCTA CAAGTTCAC
T
6750 |
var(6750):[G:0.01]
GTGTGCTGTG TATTAAGAAT TTTTT
G
C
C
A
G
G
C
A
C
G
G
T
G
C
C
T
C
A
C
A
C
C
T
G
T
6800 |
REPEAT
|
var(6785):[A:0.01]
A
A
T
C
C
C
A
G
C
A
C
T
T
T
G
G
G
A
G
G
T
A
G
G
C
G
G
A
T
C
A
A
C
T
A
A
A
G
T
C
A
G
G
A
G
T
T
C
G
A
6850
G
A
C
C
A
G
C
C
T
G
G
T
C
A
A
C
A
T
G
G
T
G
A
A
A
C
C
C
C
A
T
T
T
C
T
A
C
T
A
A
A
A
A
T
G
C
A
A
A
A
6900
A
A
A
A
A
A
T
T
A
G
C
C
A
G
G
C
A
T
G
G
T
G
G
C
A
C
A
T
G
C
C
T
G
T
A
G
T
C
C
C
A
G
C
T
A
C
T
T
G
G
6950
G
A
G
G
C
T
G
A
G
G
C
A
G
A
A
G
A
A
T
C
A
C
T
T
A
A
A
C
C
C
A
G
G
A
G
G
T
G
G
A
G
G
T
T
G
C
A
G
T
G
7000
A
G
C
C
A
A
G
A
T
C
A
T
G
C
C
A
C
T
G
C
A
C
T
C
C
A
G
C
C
T
G
G
T
C
A
A
C
A
G
A
G
T
G
A
G
A
C
T
C
C
7050
A
T
C
T
C
A
A
A
A
A
A
A
A
TTATT
G
G
C
T
G
G
T
T
T
A
A
T
A
G
T
A
G
T
A
G
G
T
T
A
T
C
A
G
A
A
C
T
7100 |
REPEAT
T
A
C
T
A
A
C
A
T
T
A
G
T
A
T
C
A
C
T
A
A
A
G
T
A
G
G
T
A
T
A
C
A
A
C
C
C
C
T
G
C
T
G
C
T
C
A
A
T
T
7150
T
GGCTTTAGA AAAAACATTT TTAAAAACTG CTTTATCATA ATCCTTTTTT
7200
CCAGTGCATT TTTGTGTTTG GTAGATTAAA TGA
C
T
G
A
TTT CTTTCTTAAA
7250 |
var(7234):[-:0.30]
TTACTTGGAC TGAGTTCTAG TTA
C
TGGACA TGAGAATTAA CCATGTCCAG
7300 |
var(7274):[G:0.11]
TAGT
T
AAGTT CATTTTCCTA CAGT
G
TGC
C
T
G
T
G
A
G
T
G
G
A
G
A
A
G
G
A
A
A
T
A
G
7350 |
var(7305):[-:0.87]
|
var(7325):[C:0.01]
|
REPEAT
G
C
T
G
C
A
A
A
A
G
A
G
C
C
C
G
A
T
G
G
A
A
C
T
T
T
G
G
G
G
T
G
A
T
G
G
A
T
A
T
A
T
T
T
C
C
A
T
C
T
7400
A
G
A
T
T
G
G
T
G
A
T
G
G
T
T
C
T
A
G
G
A
C
C
G
T
A
T
G
T
A
T
T
T
T
C
A
G
A
G
C
T
C
A
T
C
T
A
T
T
T
7450
G
T
A
C
TTGTGT ATAAATACTT
C
AATAAACCT AACTTTTTAA AAAGCTTCAT
7500 |
var(7471):[A:0.01]
TTGCCGCAAA ATGTCCCTTG TGGGCAGGCC TTTTACCTGG ACAAGCCCTA
7550
AAGATAAGCA CAAGTTTGTG GGGCTATTCA AGGGAAGTAT AGTGGGGTGC
7600
TGACAGCACA GACAAGTGTG CTATTCAAGG GAAGT