Site Genotype1 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype2 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype3 AD-pop ED-pop HD-pop XD-pop Total-pop AD-chi2 ED-chi2 HD-chi2 XD-chi2 Total-chi2 000108 AA 0 1 0 0 1 AG 0 1 2 0 3 GG 26 19 20 24 89 0.000 8.629 0.050 0.000 13.672 000174 GG 25 21 22 24 92 GT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 000195 CC 23 21 22 24 90 CT 2 0 0 0 2 TT 0 0 0 0 0 0.043 0.000 0.000 0.000 0.011 000243 AA 3 1 3 3 10 AC 14 6 8 13 41 CC 8 14 11 8 41 0.694 0.114 0.577 0.421 0.003 000340 CC 25 16 22 24 87 CG 1 4 0 0 5 GG 0 1 0 0 1 0.010 1.037 0.000 0.000 6.180 000410 CC 23 22 21 21 87 CT 1 0 0 0 1 TT 0 0 0 0 0 0.011 0.000 0.000 0.000 0.003 000438 AA 8 18 11 9 46 AG 12 2 6 9 29 GG 3 0 2 3 8 0.209 0.055 0.655 0.093 1.115 000530 CC 0 1 0 0 1 CT 1 4 0 0 5 TT 26 17 22 24 89 0.010 1.144 0.000 0.000 6.343 000533 CC 0 1 0 0 1 CT 0 0 0 0 0 TT 27 20 22 24 93 0.000 21.000 0.000 0.000 94.000 000621 -- 22 20 19 22 83 +- 1 0 0 0 1 ++ 0 0 0 0 0 0.011 0.000 0.000 0.000 0.003 000654 AA 0 0 1 2 3 AG 3 1 5 5 14 GG 24 21 16 17 78 0.093 0.012 0.499 2.400 4.500 000836 CC 7 15 11 6 39 CT 14 3 6 11 34 TT 4 0 2 3 9 0.465 0.149 0.655 0.314 0.149 000924 CC 25 19 20 19 83 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.013 0.003 000961 CC 0 0 0 0 0 CT 5 0 0 0 5 TT 22 22 22 24 90 0.281 0.000 0.000 0.000 0.069 001141 AA 23 17 22 23 85 AG 1 4 0 0 5 GG 0 1 0 0 1 0.011 1.144 0.000 0.000 6.017 001183 AA 23 17 22 23 85 AC 1 4 0 0 5 CC 0 1 0 0 1 0.011 1.144 0.000 0.000 6.017 001358 AA 26 22 22 24 94 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 001607 CC 23 20 21 23 87 CG 0 1 0 0 1 GG 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 001694 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 23 22 21 23 89 0.043 0.000 0.000 0.000 0.011 001821 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 17 21 22 22 82 0.000 0.000 0.000 0.011 0.003 002112 CC 0 0 0 0 0 CG 0 0 0 2 2 GG 22 22 21 22 87 0.000 0.000 0.000 0.045 0.011 002163 AA 0 0 1 2 3 AT 0 1 5 5 11 TT 14 21 12 17 64 0.000 0.012 0.231 2.400 5.848 002208 CC 14 16 16 9 55 CG 0 6 3 11 20 GG 0 0 0 1 1 0.000 0.548 0.140 1.068 0.301 002350 CC 17 22 22 24 85 CG 1 0 0 0 1 GG 0 0 0 0 0 0.015 0.000 0.000 0.000 0.003 002700 AA 0 0 0 0 0 AC 1 0 0 0 1 CC 25 22 20 22 89 0.010 0.000 0.000 0.000 0.003 002768 CC 22 22 20 22 86 CT 5 0 0 0 5 TT 0 0 0 0 0 0.281 0.000 0.000 0.000 0.073 002929 CC 24 21 20 16 81 CT 3 1 0 6 10 TT 0 0 0 0 0 0.093 0.012 0.000 0.548 0.308 002977 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 27 22 20 21 90 0.000 0.000 0.000 0.012 0.003 003016 CC 21 8 6 13 48 CT 5 10 9 8 32 TT 1 4 5 1 11 0.868 0.079 0.191 0.027 2.255 020306 CC 27 21 21 24 93 CT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 020332 GG 26 21 22 24 93 GT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 020407 CC 26 21 22 24 93 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 020421 AA 7 4 2 5 18 AG 16 7 6 11 40 GG 4 10 14 8 36 1.080 1.577 1.099 0.114 1.277 020478 GG 0 0 0 0 0 GT 0 1 0 0 1 TT 26 20 22 24 92 0.000 0.012 0.000 0.000 0.003 020499 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 25 21 22 24 92 0.010 0.000 0.000 0.000 0.003 020530 CC 25 21 22 24 92 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 020847 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 20 22 24 92 0.010 0.000 0.000 0.000 0.003 021091 CC 27 22 19 23 91 CT 0 0 3 1 4 TT 0 0 0 0 0 0.000 0.000 0.118 0.011 0.044 021208 AA 7 4 2 5 18 AG 16 7 6 11 40 GG 4 11 14 8 37 1.080 1.875 1.099 0.114 1.433 021409 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 27 21 22 23 93 0.000 0.000 0.000 0.011 0.003 023197 CC 20 19 19 21 79 CT 0 1 0 0 1 TT 0 0 0 0 0 0.000 0.013 0.000 0.000 0.003 023583 CC 26 22 22 24 94 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 023660 AA 25 22 22 24 93 AC 2 0 0 0 2 CC 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 024858 AA 26 21 22 23 92 AG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 024970 AA 26 15 22 24 87 AG 1 4 0 0 5 GG 0 1 0 0 1 0.010 0.930 0.000 0.000 6.180 028415 CC 0 0 0 0 0 CT 3 0 0 0 3 TT 24 21 22 20 87 0.093 0.000 0.000 0.000 0.026 028421 CC 27 19 21 20 87 CT 0 2 1 0 3 TT 0 0 0 0 0 0.000 0.053 0.012 0.000 0.026 028435 AA 0 0 0 0 0 AG 3 0 0 0 3 GG 24 22 22 21 89 0.093 0.000 0.000 0.000 0.025 028533 CC 13 6 3 5 27 CT 12 10 7 8 37 TT 2 6 12 8 28 0.117 0.182 1.223 1.037 3.518 028623 AA 0 5 4 1 10 AT 2 10 10 5 27 TT 25 7 8 15 55 0.040 0.153 0.079 0.429 4.801 028995 AA 23 22 21 21 87 AG 1 0 0 0 1 GG 0 0 0 0 0 0.011 0.000 0.000 0.000 0.003 029079 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 24 20 20 21 85 0.000 0.012 0.000 0.000 0.003 029098 AA 1 5 11 6 23 AC 6 9 6 9 30 CC 16 7 3 6 32 0.195 0.383 1.633 0.429 6.958 029651 -- 11 10 12 15 48 +- 11 7 7 7 32 ++ 3 2 0 0 5 0.010 0.207 0.969 0.787 0.012 030052 CC 23 21 22 23 89 CT 2 0 0 0 2 TT 0 0 0 0 0 0.043 0.000 0.000 0.000 0.011 030070 AA 0 0 0 0 0 AG 0 0 0 4 4 GG 25 21 22 19 87 0.000 0.000 0.000 0.209 0.046 030212 -- 21 22 22 24 89 +- 5 0 0 0 5 ++ 0 0 0 0 0 0.294 0.000 0.000 0.000 0.070 030988 GG 0 0 0 0 0 GT 1 0 0 0 1 TT 26 22 22 22 92 0.010 0.000 0.000 0.000 0.003 031170 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 26 22 22 23 93 0.010 0.000 0.000 0.000 0.003 031202 CC 0 0 0 0 0 CT 0 0 0 2 2 TT 27 22 22 21 92 0.000 0.000 0.000 0.048 0.011 031608 AA 0 1 0 0 1 AG 0 1 2 0 3 GG 26 20 18 24 88 0.000 9.075 0.055 0.000 13.512 031732 AA 4 4 2 5 15 AG 17 7 6 11 41 GG 3 11 12 8 34 4.216 1.875 0.800 0.114 0.194 031835 AA 1 4 4 1 10 AG 1 8 9 6 24 GG 23 7 7 17 54 10.413 0.353 0.126 0.240 6.545 035043 CC 0 0 0 0 0 CT 0 0 0 1 1 TT 26 22 22 23 93 0.000 0.000 0.000 0.011 0.003 035123 AA 0 0 0 0 0 AC 0 0 0 1 1 CC 26 22 22 23 93 0.000 0.000 0.000 0.011 0.003 035323 CC 25 22 22 24 93 CT 1 0 0 0 1 TT 1 0 0 0 1 11.304 0.000 0.000 0.000 41.548 035371 CC 0 0 0 0 0 CT 0 0 1 0 1 TT 27 22 21 24 94 0.000 0.000 0.012 0.000 0.003 035496 AA 24 22 22 24 92 AC 3 0 0 0 3 CC 0 0 0 0 0 0.093 0.000 0.000 0.000 0.024 035655 CC 24 22 22 24 92 CT 3 0 0 0 3 TT 0 0 0 0 0 0.093 0.000 0.000 0.000 0.024 035726 CC 26 16 22 24 88 CT 1 5 0 0 6 TT 0 1 0 0 1 0.010 0.499 0.000 0.000 4.475 036072 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 036251 AA 26 22 22 24 94 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 036415 CC 26 22 22 24 94 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 036602 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 25 22 22 22 91 0.040 0.000 0.000 0.000 0.011 036799 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 036864 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 25 22 22 24 93 0.040 0.000 0.000 0.000 0.011 036915 CC 25 22 22 20 89 CT 2 0 0 3 5 TT 0 0 0 1 1 0.040 0.000 0.000 2.617 6.343 037140 CC 24 21 19 18 82 CT 3 1 3 6 13 TT 0 0 0 0 0 0.093 0.012 0.118 0.490 0.512 037182 CC 26 22 22 23 93 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 037262 CC 27 22 22 22 93 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 037569 CC 25 21 17 24 87 CG 2 0 0 0 2 GG 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 037617 CC 23 20 17 24 84 CT 2 0 0 0 2 TT 0 0 0 0 0 0.043 0.000 0.000 0.000 0.012 037679 CC 25 21 16 24 86 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 037706 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 24 19 16 24 83 0.042 0.000 0.000 0.000 0.012 037739 AA 26 19 13 23 81 AG 0 0 3 1 4 GG 0 0 0 0 0 0.000 0.000 0.171 0.011 0.049 037782 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 21 19 15 22 77 0.012 0.000 0.000 0.000 0.003 Note: AD: African_Descent ED: European_Descent HD: Hispanic_Descent XD: Asian_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 000621: T 029651: TTCCCC 030212: c