LOCUS MT3 7183 bp DNA linear PRI 20-NOV-2005 DEFINITION Homo sapiens MT3 gene, metallothionein 3 (growth inhibitory factor (neurotrophic)) (MT3) gene, complete cds. ACCESSION MT3 VERSION tmp KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 7183) AUTHORS Livingston,R.J., Rieder,M.J., Shaffer,T., Bertucci,C., Baier,C.N., Rajkumar,N., Willa,H.T.., Daniels,M., Downing,T.K., Stanaway,I.B., Nguyen,C.P., Gildersleeve,H., Cassidy,C.M., Johnson,E.J., Swanson,J.E., McFarland,I., Yool,B., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (20-NOV-2005) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..7183 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 152 /frequency="0.24" /replace="A" variation 155 /frequency="0.01" /replace="A" variation 313 /frequency="0.04" /replace="A" variation 438 /frequency="0.01" /replace="A" variation 442 /frequency="0.01" /replace="" variation 579 /frequency="0.39" /replace="T" variation 672 /frequency="0.01" /replace="A" variation 778 /frequency="0.03" /replace="C" variation 798 /frequency="0.01" /replace="T" variation 818 /frequency="0.05" /replace="C" variation 819 /frequency="0.01" /replace="C" variation 1317 /frequency="0.11" /replace="T" variation 1354 /frequency="0.04" /replace="T" variation 1526 /frequency="0.01" /replace="C" variation 1532 /frequency="0.01" /replace="T" variation 1533 /frequency="0.02" /replace="A" variation 1583 /frequency="0.05" /replace="C" variation 1814 /frequency="0.15" /replace="T" variation 1831 /frequency="0.01" /replace="A" variation 1833 /frequency="0.01" /replace="A" variation 1870 /frequency="0.01" /replace="A" variation 2148 /frequency="0.99" /replace="" variation 2149 /frequency="0.01" /replace="T" variation 2283 /frequency="0.01" /replace="C" variation 2404 /frequency="0.40" /replace="C" variation 2457 /frequency="0.01" /replace="T" gene 2480..4230 /gene="MT3" mRNA join(2480..2746,2995..3060,3965..4230) /gene="MT3" /product="MT3" CDS join(2716..2746,2995..3060,3965..4074) /gene="MT3" /codon_start=1 /product="metallothionein 3 (growth inhibitory factor (neurotrophic))" /translation="MDPETCPCPSGGSCTCADSCKCEGCKCTSCKKSCCSCCPAECEK CAKDCVCKGGEAAEAEAEKCSCCQ" variation 2810 /gene="MT3" /frequency="0.01" /replace="A" variation 2857 /gene="MT3" /frequency="0.02" /replace="A" variation 2973 /gene="MT3" /frequency="0.01" /replace="G" variation 3245 /gene="MT3" /frequency="0.04" /replace="A" variation 3292 /gene="MT3" /frequency="0.24" /replace="G" variation 3370 /gene="MT3" /frequency="0.01" /replace="A" variation 3437 /gene="MT3" /frequency="0.07" /replace="C" variation 3656 /gene="MT3" /frequency="0.39" /replace="C" variation 3689 /gene="MT3" /frequency="0.39" /replace="C" variation 3747 /gene="MT3" /frequency="0.17" /replace="A" variation 4152 /gene="MT3" /frequency="0.01" /replace="A" variation 4238 /frequency="0.02" /replace="C" variation 4645 /frequency="0.02" /replace="A" variation 4808 /frequency="0.01" /replace="" misc_feature 4892..5483 /note="Region not scanned for variation" variation 5597 /frequency="0.01" /replace="C" variation 5625 /frequency="0.01" /replace="C" variation 5665 /frequency="0.02" /replace="T" variation 5982 /frequency="0.11" /replace="G" variation 6099 /frequency="0.35" /replace="A" variation 6109 /frequency="0.35" /replace="G" variation 6497 /frequency="0.01" /replace="A" variation 6565 /frequency="0.01" /replace="C" variation 6584 /frequency="0.42" /replace="C" variation 6679 /frequency="0.23" /replace="C" variation 6734 /frequency="0.02" /replace="G" variation 6745 /frequency="0.15" /replace="T" variation 6820 /frequency="0.01" /replace="T" variation 6821 /frequency="0.01" /replace="T" variation 6824 /frequency="0.35" /replace="G" variation 6854 /frequency="0.14" /replace="A" variation 7132 /frequency="0.15" /replace="T" BASE COUNT 1721 a 1830 c 1858 g 1774 t ORIGIN 1 ggtcagagag gataaaggta ggggagaaag ggacctcctg gagcgataga cctgcacggc 61 atgctcctca tggaggctta gaacggaagg ccacatggag gatgaggggt agggggtatc 121 agaaagatgc tgtggttttc agacccctca atatcctggc cacccttggg gcaggaagga 181 ggttgctatg ccagctctga agcctcaacc ccaaagaaat ctgacagacc tgagggagat 241 tgcaggggag gcagcttcag ttgagtgcat cccaagcgtg aaggtcctag atacagaaac 301 cctgaggttc agggcctagg gcaaagaagt taagaggcca gagtgccctt aggcaaaatg 361 gaagcaaaga aacagatgac tggctgatgc tagagttggg gaactctgag atctgatatt 421 ccaattgtcc agtggctgga acctacactg tccgtgtgag agcctacact tgaatatagc 481 ctctgactct ccatacaagg ctctattttg gaccttggtt agccttggct ggcctggcta 541 cccctctccc gtggtagcac agcattcagc tgctctcgcc ctgcacagtg cgggctttgc 601 tttaaaaatt ctcatctcag gatgaatttc cttattgggt tactccagtg tgactagttc 661 tttgtcaaac acctcctctg tccctgcctt catttggggg ccatcttttt tgcgggggag 721 gtacagggtc ttgctctgtc atccaggcta cagttcagtg gtgttatcat agctcactgc 781 agcctcaaac tcctgggctc aagcaatcct cccaccctgg cctcccaagt agctaggggt 841 acatgtgatc cccaccacta ctggctgatt ttttaaattt ttattttatt tatttatttt 901 gtagagatgg ggtcttacta tgttgcctag gctggtctca aactcctggc ttcaagtgat 961 tctcaccttg acctcccaaa gcatagggat tacagacatg agccactggc cttgggagtc 1021 atcttaatgc tcagctccac gtaccccgaa acacaacccc ttctgtgaaa gcattagcaa 1081 gcaaggaaga ttttcagaaa gtctcagagg gacagcagag agagtgacac tcacacactt 1141 cacaataaca ttttttaaaa tgctttttac agaggtcttc tcccagctct ggtcccttct 1201 ttgctgcccc ccaaacttca tctagacccc tgaatggccc tcgtttttga ggagcaatga 1261 cctctctcct ctccacttct cggggtctca ttctcactca cgctaccctg ctcagtcaca 1321 aatgattctc cttggcagct tagacctctt ttcctttcat tttgcaccca aatcccttat 1381 attcatataa acattgatca atcttatttt acctaggctc tcttttcttt ttgagacagg 1441 gtcttgctct gtgacccaga ttggagtgca gtagtgcaat aaggcttact tactgcagcc 1501 tcctcaacct cctgggctta agcaatcctc ccgcctcagc ctcccaagta gctgggacta 1561 caggtgcatg ccaccacatc cagataattt tttttttttt ttttttagat ggagtttccc 1621 tcttgttgca caggctgaag tgcagtggtg cgatctgggc tcactgcaac ctccgcctcc 1681 cagggtcagg tgattctcct gcctcagcca cctgagttgc tgggattaca ggcacctgct 1741 accatgccgg gctaattttg tatctttagt agagatgggg tttctccatg ttggtcaggc 1801 tggtctcgaa ctcccgacct caggtgatcc gccggcctcg gcctcccaga gtgttgggat 1861 tacaggcgtg agccaccacg tccggcctcc tttttataaa tagaaaaatc tcactgacct 1921 gccttgagtt taacatgccc cccactgaca atccctctag atacctgagt tctgagttct 1981 aggcctggct cggcctcagg cttattctgg gacccaggca catttctgct tctctggcct 2041 cactttttct tatctgtata atggagggtt aggagtcaag gatctgaaga tgccaggcag 2101 gacagcgggg aaatggaaca cgccccttgc cagtgacact cggaggggcg caagagtcag 2161 tgtcgggctc atcgtgagca ggttctttct gcccccagtt cagcaacccg tctgaacaga 2221 tctggcgtcc tggagaattc tagaatgaag gggaagagag gcagggaaga gctgggaaat 2281 acgcaaagcg cctttttctc cactttcgga gatggtacgt gcgcgcttcc acgcagtggc 2341 ggctgctgcg gcgagcacgt cccctgcggg acccacgcgg ggagtgggct ggcagtgcgc 2401 gcatagcggc ggcgagtggg tcgtgcacgc ggatgcgggg tgggagtggg ggcgcacgcg 2461 cgggcgtggg cgagcgggcc ccggcagtgc acacacacgg caggggcggg cgacagatgc 2521 agtgcgtgcg ccggagccca agcgcacaaa cggaaagagc gggcgcggtg cgcaggggcg 2581 ggcgcccagc gggcttggca tgcgcgcccc cgcccgaggc tataaaagca tcgccacctg 2641 ctgccactag ccaagccgcg cgtccagttg cttggagaag cccgttcacc gcctccagct 2701 gctgctctcc tcgacatgga ccctgagacc tgcccctgcc cttctggtga gcccccgccc 2761 ccgctcgcat cctgcgcact gcgcgccctt gtacctgcaa agaaacccac gccctgcgcc 2821 ttcgctcaag gacacttggg ggaagggccc ctgattccct attcttcacc tcgtgaaggg 2881 cgggcatgcc tgtgtcgcgg agaacaggga gacttggcac cccatctcct cgtgacaggc 2941 gtggggaccc gagttcgtcc acattaaccc ttcctgtggc gtcgccctct ctaggtggct 3001 cctgcacctg cgcggactcc tgcaagtgcg agggatgcaa atgcacctcc tgcaagaaga 3061 gtgagtgcgg ggacccttcc cctctgccgc cgccccctct gctctgcgga gtcggtgtct 3121 caccacgcag gatgtggaga gacagccagg ccccgatccc gtggtttctg actcttgctg 3181 gaatagaacc acccgggcag acattaaaat acagatgccc ctgccccaca cccaggaatt 3241 gatggcctag gcgtgggacg agaggttttt gtaaatcccc agaagactcc aatggcagct 3301 gggattgagg actgccacac tggtccaacc tttcccgacc catccctcaa aaactcccca 3361 aaacctgggg aagccattag tgaggctgcg gctcagctct ggagttccgg tcccttggcc 3421 tctctccggc cttacggatc ctctcagttt gatctcaaaa tctccccagc tcacggcagt 3481 gtaatatgca tagggagtaa gaggtgggag gaaggctccc ttcttcccta ggtatgaaac 3541 caggcacagg tccccaccgc ctccccacgg ctttcctggg ccccttacat ctgcaccata 3601 tctgcccctc ccaagtttat cctttgaggc ccctttcaag gtcgtttacc ctgtgatgct 3661 ttctccttaa ggcctagtac ccacctaagc tgggcttaag cccaccagcc cccaggactt 3721 cctggcatcc acccaagggg ctctggtcat ttcctgggta cctcactcct gtggaggtgc 3781 aggatgccac tgccgcgaca tagatgctga gtcaaagcag gtgtgagact aagaaggggg 3841 ctgcgactag ccctggctga atgaaccagg atgactcccc acccagcacc cttccctccc 3901 ctttgatggg gacgaattgg gggagtgtgc atcagagagt ggtcatcttc cattttatct 3961 gcaggctgct gctcctgctg ccctgcggag tgtgagaagt gtgccaagga ctgtgtgtgc 4021 aaaggcggag aggcagctga ggcagaagca gagaagtgca gctgctgcca gtgagaaggc 4081 acccctccgt gtggagcacg tggagatagt gccaggtggc tcagtgccac ctatgcctgt 4141 ggtgaagtgt ggctggtgtc cccttcccct gctgaccttg gaggaatgac aataaatccc 4201 atgaacagca tgagccaagg actggtctct tcttaaaggg gggaaggatg tggagcagtg 4261 ggggagccta ttccaaggga gccacacagt taagagtgaa accctggctg ggtgcagtgg 4321 ctcacgcctg tagtcccagc actttgggag gccgaggcag gtggatcacc tgaggtcagg 4381 agttcgagac cagcctggcc aacatggtga aaccccgtct gtactacaaa taaaaaaatt 4441 agccgggcat gatggcatgt gcctgtaatc ccagctactc gggaggttga ggcaggagaa 4501 ttgcttgaac ccaggaggtg gaggttgcag tgagctgagg tcacggcact gcacactagc 4561 ctgggcgaca gagcaggact ctgtctcaaa aaaaaaaaag aaaaagaaac actgagactt 4621 ggccactggt ctgtttgggg ctggggtgga gcccagggga cagagtgcat tctcccccac 4681 cttcagatgg caccccaccc tcctgctaag tcaagttcaa gtctgggaaa caggagagac 4741 caggctcatc taggtttgtc cctctccaac ctccaaacct cagcttcctc atctgtagga 4801 tagagttagg gggagttaag gccagcccct agcctgtagg gcctgtgaat ttggggattt 4861 tctagttgct cctgcaaagc tgcctgtttt cagagttatt agaggagagt ccaggaggcc 4921 caggggcttg tcttggctga ctgtcagctg cattcccaag gtcaccaccc tgaatagcct 4981 gtttccccaa agcacgttgt tcagttccct ttcacatctt ctcatttggc ggtttgtctc 5041 cagcccctcc tgtcttcaag aggaagtagg gtaataagag cttttatcca cagtggttgt 5101 gatccagtcc ttggtgaaag agaacactca ggtttaccta ggtgagctaa gaagggagaa 5161 atgaattctg ggaaacaaaa gtttcccagt aagaggatac aatgctgtga acacaacact 5221 tttcctccaa gttagttttt tgctgacagt tatttcaaaa gctcaccata tatatatata 5281 tatatatata gcctaacagg ctgagtttag aaaaggagaa tgcaaggaaa gtcaagccag 5341 ctttgaaaag gaacaacaaa gggagctcgc tccaacctgg tagctccact cgttcccaaa 5401 gctctggaaa attgtggagg gtcaggaaga gatcagttgg actgaagaca gttcaaaaac 5461 aaacctctgt gttgctggaa gtaagagatg atcaaaccag tgggaaagta cacactactc 5521 agtgaaaggt gttggaacaa tttacatgtc tggctaattt ttgtagagat ggggtttcac 5581 catgttgccc aggctggtct cgaactcttg agctcaagtg atccacctgc cttggcctcc 5641 caaagtgctg ggattagagg cagacttttt ttctttttct caggctggag tgcagtggtg 5701 ccatcagggc agtgtggacc tccagggctc aaacaatcct cccacctcag cctcccgagt 5761 agctgggact ataggtgcat cccatcactc ccagctaatt tttttttttt ttggtagagg 5821 ctgggttttg ccaggttgcc aaggctatca gtatgatttt taacttcatt ttacagatgg 5881 ggcagtaggg gttggggaaa tttgcatgag gacacacagc tagagtggtg tggtatagcc 5941 aggatttgaa tacaggctgt ctaactatag ggtagccccc taaacttaag cacgcattgt 6001 tttcttgctt ctggcttgcc tcgtgttaca aaaagcataa aaaaagaagc aaaatcacct 6061 catatacact acgatggcta gtatcggaaa aacaaaatta aaagtgttag ccagaatgta 6121 gagacattgg aacccttgtg ccttgctggt aggaatgtaa aatggtgcag tgctgtggaa 6181 aactatagtt cccaaagtta aaaatagaat tccatatgat ccagcaattc cacttctagg 6241 tataccgcaa agaattggaa gcagagtctt gaagtggtat tcttatacac atgttcatag 6301 gattatttat aatcaccaaa aagtggaagc aacccaagtg tccattgaca gatgaacaga 6361 taaacaaagt gtgttatata catacaaagg aatattattc aaccttaaaa agcaaggaaa 6421 tttgacatat gctacaacat gaatgaatct tgaggacatt atgctgagtg aaacaagccc 6481 atcacccaaa gacaaattct gtgtgactcc atgcgtatga gacacttaga gccgttatag 6541 tctatctaca cagagacagg tgtaagtgta ggatggaagt tgctggggct ggagggaggg 6601 atgatatggt ttggctctgt gtccccaccc aaatctcatc tcatattgta atcaggggag 6661 ggacctggtg ggaagtgatt ggatcatggg gatggtctcc ctcatgctgt tctcatgata 6721 gctgatggtt ttgaaagagt tcggcagttc cccctctgtc ctctctctct cctgccaccc 6781 tgtgaagaag gtgcttgcct cccctttgcc ttctaccatg attataagtt tcctgaggcc 6841 tacccagcca tgcggaactg tgagtcaatt aaatcttttt tctttacaaa ttacccagtc 6901 tcagatagta tctttatagc agtgtgaaaa caaactaata caaggtggga attgagagtt 6961 gtttaatcag tacagagttt cagttttgca agatgaaaag ggttctggag atgggtcgca 7021 gagaatctga atatacttgt cattactgaa ctggacactt aaaaatcttt aagatggcaa 7081 attttatgtc atcgtatttt acaattttaa acaacaaaca aagctaaatg acgaaggaca 7141 atagtttcta ttaatatact gtgtgctgtg gatttaattg tgt //