************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /net/nickerson/lims/bin/phase/PHASE2 -d1 mosc1.phase.inp mosc1.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST mosc1.phase.out_freqs : haplotype frequency estimates mosc1.phase.out_pairs : most likely haplotype pairs for each individual mosc1.phase.out_recom : estimates of recombination parameters mosc1.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 95 Number of Loci: 84 Positions of loci: 373 1061 1245 1588 1865 1968 2643 4183 4203 4234 4246 4340 5146 6267 6816 7204 10779 11758 12229 12323 12778 12803 13564 14058 14073 15113 15156 15162 15228 15619 15904 15932 15948 15975 16045 16121 16275 16319 16831 17068 17145 17507 17988 19064 19148 19200 19346 19381 19696 20376 20978 21160 21465 21668 21725 21809 21922 23089 23169 23180 26095 26225 26703 27082 27247 27409 28248 28278 28887 29201 29764 29917 29974 29992 30078 30222 30473 30474 30477 30896 30998 31062 31114 31266 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file mosc1.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 AACACCACAATGCAGCTGGGTCTGGGTACCTAGDGACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 2 AACACCACAATGCGCCCGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCACGTACGTTTCTITAT 4 AG 2 AGACAGTAGCGCGC 1.000000 3 AACACCACAATGCGCCTGGGGCTCGTCGCCTAGDCACGCCGCATCATCCCACGAACGTTCCCDTGC 3 GA 2 ACGCGACGCCGGGC 1.000000 4 AACACCACAATGCGCCTGGGTCTGGGTACCTAAICATTCTGTATTGCACTACGTCAGCACCCDTGT 3 GG 2 AGGTGACGCCGGGC 1.000000 5 AACACCACAATGTAGACGGGGCTCGTCGCCCAADGCCTCCTCCGCGCCTCACCTACGTTTCTITAT 3 AG 2 AGACAGTAGCGGGC 1.000000 6 AACACCACAATGTAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCACGTACGTTTCTITAT 4 AG 2 AGACAGTAGCAGGC 1.000000 7 AACACCACAATGTAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATGTACGTTTCTITAT 4 AG 2 AGACAGTAGCAGAT 1.000000 8 AACACCACAATGTAGACAATGCTGATCACTTAGICCCTCTGTATTGCATTACGTCAGCACCCDTGT 3 GG 2 AGGTGACGCCGGGC 2.000000 9 AACACCACGGAATAGACGAGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCACGTACGTTTCTITAT 4 AG 2 AGACAGTAGCGGGC 1.000000 10 AACACCAAGGAATAGACGGGGCTCGTCGCCCAADGCCTCTGTATTGCATTACGTCAGCACCCDTGT 3 GG 2 AGGTGGTAGCGGGC 1.000000 11 AACACCAAGGAATAGACGGGGCTCGTCGCTCAAICACGCCGCATCATCTCCCGTCCTTTCCTDCAT 4 GG 2 AGACGGTAGCAGAT 1.000000 12 AACACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCGCATCATCCCCCGTCCTTTCCCDTGT 2 GG 2 GGGCAACGCCGGGC 1.000000 13 AACACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCACGTACGTTTCTITAT 4 AG 2 AGACAGTAGCGGGC 2.000000 14 AACACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCACCTACGTTTCTITAT 4 AG 2 AGACAGTAGCAGAT 1.000000 15 AACACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATGTACGTTTCTITAT 3 AG 2 AGACAGTAGCGGGC 1.000000 16 AACACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTCCGTTTCTITAT 4 AG 2 AGACAGTAGCAGAT 1.000000 17 AACACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTCCTITAT 3 AG 2 AGACAGTAGCGCGC 1.000000 18 AACACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 2 AG 2 AGACAGTAGCAGAT 1.000000 19 AACACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 3 GG 3 AGGCGACGCCGGGC 1.000000 20 AACACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 4 AG 2 AGACAGTAGCAGAT 5.000000 21 AACACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 4 AG 2 AGACAGTAGCAGGC 2.000000 22 AACACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 4 AG 2 AGACAGTAGCGGGC 1.000000 23 AACACCAAGGAATAGACGAGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTCCGTTTCTITAT 3 AG 2 AGACAGTAGCGGGC 1.000000 24 AACACCAAGGAATAGATGGGGCTCGTCGCCTAADCACGCCGCATCATCCCACGAACGTTCCCDTGC 3 GA 2 ACGCGACGCCGGGC 1.000000 25 AACACCAAGGAATAGATGGGTCTGGTCGCCTAGDCACGCCGCATCATCCCACGAACGTTCCTDTGT 2 GG 2 AGGCGACGCCGGGC 1.000000 26 AACACCAAGGAATAGATGGGTCTGGGTACCTAGDCCCGCCGCATCATCCCCCGTCCTTTCTCDTGT 2 GG 2 GGGCAACGCTGCGC 1.000000 27 AACACCAAGGAATAGCCGGGGCTCGTCGCTCAAIGCCTCCGCATCATCTCACGAACGTTCCTDTAT 3 AG 2 AGACAGTAGCAGGC 1.000000 28 AACACCGCAATGCAGCTGGGTCTGGGTACCCAADCCTGCCGCATCATCTCCCGTCCTTTCTCDTGT 3 GA 2 ACGCGACGCCGGGC 1.000000 29 AACACCGCGGAACAGACGGGGCTCGTCGCTCAAIGCCTCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 30 AACACCGCGGAACAGCCGGGGCTGATCACCCAADCCTTCTGTATTGCATTACGTCAGCACCCDTGT 3 GG 2 AGGTGGTAGCGGGC 1.000000 31 AACACCGCGGAACAGCCGGGGCTCGTCGCCCAADCCTTCTGTATTGCATTACGTCAGCACCCDTGT 3 GG 2 AGGTGACGCCGGGC 1.000000 32 AACACCGCGGAACAGCCGGGGCTCGTCGCCCAADGCCGCCGCATTGCACCCTCTCCTTTCCCDTGT 3 GG 2 GGGCAGTAGCAGAT 2.000000 33 AACACCGCGGAACAGCCGGGGCTCGTCGCCCAAIGCCGCCGCATCATCCCACGAACGTTCCCDTGC 2 GA 2 ACGCGACGCCGGGC 3.000000 34 AACACCGCGGAACAGCCGGGGCTCGTCGCCCAGDGCCGCCGCATTGCACCCTCTCCTTTCCCDTGT 3 GG 2 GGGCAGTAGCAGAT 1.000000 35 AACACCGCGGAACAGCCGGGGCTCGTCGCCTAGDCACGCCGCATCATCCCACGAACGTTCCCDTGC 2 GA 2 ACGCGACGCCGGGC 1.000000 36 AACACCGCGGAACAGCCGGGGCTCGTCGCCTAGDGACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 37 AACACCGCGGAACAGCCGGGGCTCGTCGCCTAGIGCCGCCGCATCATCCCACGAACGTTCCCDTGC 2 GG 2 AGACAGTAGCAGGC 1.000000 38 AACACCGCGGAACAGCCGGGGCTCGTCGCTCAAIGACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 39 AACACCGCGGAACAGCCGGGGCTCGTCGCTCAAIGCCGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGGCAGCAGAT 1.000000 40 AACACCGCGGAACAGCCGGGGCTCGTCGCTCAAIGCCTCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 3 AGGCGACGCCGGGC 1.000000 41 AACACCGCGGAACAGCCGGGGCTCGTCGCTCAAIGCCTCCGCCTTGCCTCACGTCCGCACCTICAT 4 AG 2 AGACAGTAGCAGAT 2.000000 42 AACACCGCGGAACAGCCGGGGCTCGTCGCTCAAIGCCTCCTCCTTGCCTCACGTCCGCACCTICAT 4 AG 2 AGACAGTAGCAGAT 2.000000 43 AACACCGCGGAACAGCCGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTICAT 4 AG 2 AGACAGTAGCGGGC 1.000000 44 AACACCGCGGAACAGCCGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 3 AG 2 AGACAGTAGCGCGC 1.000000 45 AACACCGCGGAACAGCCGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 4 AG 2 AGACAGTAGCAGAT 1.000000 46 AACACCGCGGAACAGCCGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 4 AG 2 AGACAGTAGCGGGC 1.000000 47 AACACCGCGGAACAGCCGGGGCTCGTCACCCAADCCCTACTCCGCGCCCCACGAACGTTCTCDTGT 3 GG 2 GGGCAACGCTGCGC 1.000000 48 AACACCGCGGAACAGCCGGGGCTCGTCACCCAADCCCTACTCCGCGCCCCACGAACGCTCCCDTGT 2 GG 2 AGGCGGTAGCAGAT 1.000000 49 AACACCGCGGAACAGCCGGGGCTCGGTACCCAAICCCGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 3 AGGCGACGCCGGGC 1.000000 50 AACACCGCGGAACAGCCGGGGCTCGGTACTCAGDCACGCCGCATCATCCCCCGTCCTTTCTCDTGT 3 GG 2 AGGCGACGCTGCGC 1.000000 51 AACACCGCGGAACAGCCGGGGCTCGGTACTTAGDCCCGCCGCATCATCTCCCGTCCTTTCCTDTAT 3 GG 2 AGACAGTAGCAGAT 1.000000 52 AACACCGCGGAACAGCCGGGGTTGGTCACCCAADGACGCCGCATCATCCCACGAACGTTCTCDTGC 2 GA 2 GCGCGACGCCGGGC 1.000000 53 AACACCGCGGAACAGCCGGGGTCGGTCACCCAADGACGCCGCATCATCCCACGAACGTTCCTDTGT 3 GG 4 AGGCGACGCCGGGC 1.000000 54 AACACCGCGGAACAGCCGAGGCTCGTCGCTCAAIGCCTCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 3 AGGCGACGCCGGGC 1.000000 55 AACACCGCGGAACAGCCGATGCTGATCATCCAAIGCCTACTCCGCGCCTCACGAACGTTCCTITAT 4 AG 2 AGACAGTAGCAGAT 1.000000 56 AACACCGCGGAACAGCCGATGCCGGTCACTCGAICCTTCTGTATTGCATTACGTCAGCACCTDTAT 3 GG 4 AGGTGACGCCGGGC 1.000000 57 AACACCGCGGAACAGCCGATGCCGGTCATCCAAIGCCTACTCCGCGCCTCACGAACGTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 58 AACACCGCGGAACAGCCAAGGCTGATCACCTAGDGCCTCCGCATCATCCCACGAACGTTCCCDTGC 2 GA 2 ACGCGACGCCGGGC 1.000000 59 AACACCGCGGAACAGCCAATGCTGATCGCCCAADGCCTCCTCCTTGCCTCACGTCCGCACCCICAT 3 AG 2 AGACAGTAGCACGC 1.000000 60 AACACCGCGGAACAGCCAATGCTGATCACCCAADCCCGACTCCGCGCCTCCTGTCCGTACCCITAT 2 GG 2 AGGCGACGCCGGGC 1.000000 61 AACACCGCGGAACAGCCAATGCTGATCACCCAADCCTTCTGTATTGCATTACGTCAGCACCCDTGT 3 GG 2 AGGTGACGCCGGGC 4.000000 62 AACACCGCGGAACAGCCAATGCTGATCACCCAAICCTTCTGTATTGCATTACGTCAGCACCCDTGT 3 GG 2 AGGTGACGCCGGGC 2.000000 63 AACACCGCGGAACAGCCAATGCTGATCACCCAAIGACGCCGCATCATCCCCCGTCCTTTCTCDTGT 2 GG 2 GGGCAACGCTGCGC 1.000000 64 AACACCGCGGAACAGCCAATGCTGATCACCCAAIGCCGACTCCGCGCCTCCTGTCCGTACCCDTGT 2 GG 2 AGGCGGTAGCAGAT 1.000000 65 AACACCGCGGAACAGCCAATGCTGATCACCCGAICCTTCCGCATCATCCCACGAACGTTCCCDTGC 2 GA 2 ACGCGACGCCGGGC 2.000000 66 AACACCGCGGAACAGCCAATGCTGATCACCTAGDCCTTCTGTATTGCATTACGTCAGCACCCDTGT 3 GG 2 AGGTGACGCCGGGC 1.000000 67 AACACCGCGGAACAGCCAATGCTGATCACTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 4 AG 2 AGACAGTAGCAGAT 1.000000 68 AACACCGCGGAACAGCCAATGCTGAGTACCTAGDGACGCCTCCGCGCCCCATCTCCGCACCCITAT 3 GG 2 AGGCGACGCCGGGC 1.000000 69 AACACCGCGGAACAGCTGGGGCTCGTCGCCCGGICACGCCGCATCATCCCCTGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 70 AACACCGCGGAACAGCTGGGGCTCGTCGCCCGGICCCGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 2.000000 71 AACACCGCGGAACAGCTGGGGCTCGTCGCCTAGDCACGCCGCATCATCCCACGAACGTTCCCDTGC 3 GA 2 ACGCGACGCCGGGC 1.000000 72 AACACCGCGGAACAGCTGGGGCTCGTCACCCAADCCTTCTGTATTGCATTACGTCAGCACCTDTGT 3 GG 4 AGGTGACGCCGGGC 1.000000 73 AACACCGCGGAACAGCTGGGTCTGGTCGCCCAADGCCGCCGCATTGCATCCTCTCCTTTCCCDTGT 3 GG 2 GGGCAGTAGCAGAT 1.000000 74 AACACCGCGGAACAGCTGGGTCTGGTCGCTCAAIGCCTCCTCCTTGCCTCACGTCCGCACCTITAT 3 AG 2 AGACAGTAGCAGGC 1.000000 75 AACACCGCGGAACAGCTGGGTCTGGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCCITAT 4 AG 2 AGACAACGCCGGGC 1.000000 76 AACACCGCGGAACAGCTGGGTCTGGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCCITAT 4 AG 2 AGACAACGCTGGGC 1.000000 77 AACACCGCGGAACAGCTGGGTCTGGTCACCCAAIGCCGACTCCGCGCCTCCTGTCCGCACTCDTGT 2 GG 2 AGGCGACGCCGGGC 1.000000 78 AACACCGCGGAACAGCTGGGTCTGGTCACCTGAICACGCCGCATCATCCCCCGTCCTTTCCCDTGC 3 GG 2 GGGCAACGCCGGGC 1.000000 79 AACACCGCGGAACAGCTGGGTCTGGGTACCCAADCACGCCGCATCATCCCCCGTCCTTTCCCDTGT 4 GG 3 AGGCGACGCCGGGC 1.000000 80 AACACCGCGGAACAGCTGGGTCTGGGTACCCAADCCCGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 GGGCAACGCCGGGC 1.000000 81 AACACCGCGGAACAGCTGGGTCTGGGTACCCAADCCCGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 3 AGGCGACGCCGGGC 2.000000 82 AACACCGCGGAACAGCTGGGTCTGGGTACCCAAICCCGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 3 AGGCGACGCCGGGC 2.000000 83 AACACCGCGGAACAGCTGGGTCTGGGTACCCAGDCACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 3 AGGCGACGCCGGGC 1.000000 84 AACACCGCGGAACAGCTGGGTCTGGGTACCCAGDGACGCCGCATCATCCCCCGTCCGTTCTCDTGT 2 GG 2 GGGCAACGCTGCGC 1.000000 85 AACACCGCGGAACAGCTGGGTCTGGGTACCCGAICACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 86 AACACCGCGGAACAGCTGGGTCTGGGTACCTAAICACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 87 AACACCGCGGAACAGCTGGGTCTGGGTACCTAGDCACGCCGCATCATCCCCCGTCCTTTCCCDTGT 2 GG 2 GGGCAGTAGCGGGC 2.000000 88 AACACCGCGGAACAGCTGGGTCTGGGTACCTAGDCACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 89 AACACCGCGGAACAGCTGGGTCTGGGTACCTAGDCCCGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGGTAGCAGAT 1.000000 90 AACACCGCGGAACAGCTGGGTCTGGGTACCTAGDCCCGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 91 AACACCGCGGAACAGCTGGGTCTGGGTACCTAGDCCCGCCGCATCATCCCCCGTCCTTTCTCDTGT 2 GG 2 GGGCAACGCTGCGC 1.000000 92 AACACCGCGGAACAGCTGGGTCTGGGTACCTAGDCCCGCCTCCGCGCCCCATGTCCGCACTCITGT 2 GG 2 GGGCAACGCCGCGC 1.000000 93 AACACCGCGGAACAGCTGGGTCTGGGTACCTAGDGACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 3.000000 94 AACACCGCGGAACAGCTGGGTCTGGGTACCTAGDGACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 3 AGGCGACGCCGGGC 1.000000 95 AACACCGCGGAACAGCTGGGTCTGGGTACCTAGDGCTTCTGTATTGCATTACGTCAGCACCTDTGT 3 GG 4 AGGTGACGCCGGGC 1.000000 96 AACACCGCGGAACAGCTGGGTCTGGGTACTCAAIGCCTCCTCCTTGCCTCACGTCCGCACCTICAT 4 AG 2 AGACAGTAGCAGAT 1.000000 97 AACACCGCGGAACAGCTGGGTCTCGTCGCTCAAIGCCTCCTCCTTGCCTCACGTCCGCACCCITAT 2 GG 2 GGGCAACGCTGCGC 1.000000 98 AACACCGCGGAACACCCGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 4 AG 2 AGACAGTAGCAGAT 1.000000 99 AACACCGCGGAACACCCGGGGTTGGGTACCTAGDCCCGCCGCATCATCTCCCGTCCTTTCTCDTGT 3 GG 2 AGGCGGTAGCGGGC 1.000000 100 AACACCGCGGAACACCTGGGTCTGGGTACCTAGDCACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 101 AACACCGCGGAACGGCTGGGTCTGGTCACCCAADGACGACTCCGCGCCTCCCGTCCGTACCTITAT 2 GG 2 GGGCAACGCCGGAC 1.000000 102 AACACCGCGGAACGGCTGGGTCTGGTCACCCAADGACGACTCCGCGCCTCACGTCCGTACCTITAT 2 GG 2 AGGCGACGCCGGGC 1.000000 103 AACACCGCGGAACGGCTGGGTCTGGGTACCCAADGACGCCGCATCATCCCCCGTCCTTTCCCDTGT 2 GA 2 ACGCGACGCCGGGC 1.000000 104 AACACCGCGGAACGGCTGGGTCTGGGTACCCAADGCCTACTCCGCGCCTCACGAACGTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 105 AACACCGCGGAACGCCCGGGGCTGATCACCCAAIGACGCCGCATCATCCCCCGTCCTTTCTCDTGT 2 GG 2 GGGCAACGCTGCGC 1.000000 106 AACACCGCGGAACGCCCGGGGCTCGTCGCCCAGDGCCGCCGCATTGCATCACGTCCTTTCTCDTGT 3 GG 2 GGGCAACGCCGCGC 1.000000 107 AACACCGCGGAACGCCTGGGGCTGGTCGCCTAGDCACGCCGCATCATCCCACGAACGTTCCCDTGC 2 GA 2 ACGCGACGCCGGGC 1.000000 108 AACACCGCGGAACGCCTGGGGCTGGTCGCTCAAIGCCTCCTCCTTGCCCCACGTCCGCACTCITAT 2 AG 2 AGACAACGCCGGGC 1.000000 109 AACACCGCGGAACGCCTGGGGCTGGTCGCTCAAIGCCTCCTCCTTGCCCCACGTCCGCACTCITAT 3 AG 2 AGGTGACGCCGGGC 1.000000 110 AACACCGCGGAACGCCTGGGGCTCGGTACCTAGDCACGCCGCATCATCCCCCGTCCTTTCTCDTGT 3 GG 2 AGGCGACGCCGGGC 2.000000 111 AACACCGCGGAACGCCTGGGGCTCGGTACCTAGDCACGCCGCATCATCCCCCGTCCTTTCTCDTGT 3 GG 2 GGGCAACGCCGCGC 1.000000 112 AACACCGCGGAATAGATGGGTCTGGTCGCTCAAIGCCTCCTCCGCGCCTCACGTACGTTTCTITAT 4 AG 2 AGACAACGCCGGGC 1.000000 113 AACGCCAAGGAATAGCCGGGGCTCGTCACTTAGICACGCCGCATCATCTCCCGTCCTTTCCTDTAT 2 GG 2 AGACAGTAGCAGAT 1.000000 114 AACGCTAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 115 AACGCTAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 4 AG 2 AGACAGTAGCAGAT 1.000000 116 AACGCTAAGGAATAGACGAGGCTCGTCGCCTAGDCACGCCGCATCATCCCACGAACGTTCCCDTGC 2 GA 2 ACGCGACGCCGGGC 1.000000 117 AACGCTAAGGAATAGACAATGCTGATCACCCAADCCCGCCGCATCATCCCCCGTCCTTTCCCDTGT 2 GG 2 GGGCAACGCCGGGC 1.000000 118 AACGCTAAGGAATAGACAATGCTGATCACCCAAIGACGCCGCATCATCCCCCGTCCTTTCTCDTGT 2 GG 2 GGGCAACGGTGCGC 1.000000 119 AACGCTAAGGAATAGACAATGCTGATCACCCAGDCACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 3 AGGCGACGCCGGGC 1.000000 120 AACGCTAAGGAATAGACAATGCTGATCACCCGAICACGCCGCATCATCCCCCGTCCTTTCTCDTGT 2 GG 2 GGGCAACGCTGCGC 3.000000 121 AACGCTAAGGAATAGACAATGCTGAGTACCCAADCCCGCCGCATCATCCCCCGTCCTTTCCCDTGT 2 GA 2 ACGCGACGCCGGGC 1.000000 122 AACGCTAAGGAATAGATGGGTCTGGTCACCCAAIGCCGACTCCGCGCCTCCTGTCCGTACCCDTGT 2 GG 2 AGGCGGTAGCAGAT 1.000000 123 AACGCTAAGGAATAGATGGGTCTGGTCACCCAAIGCCGACTCCGCGCCTCCTGTCCGTACCCDTGT 2 GG 3 AGGCGACGCCGGGC 1.000000 124 AACGCTAAGGAATAGATGGGTCTGGGTACCTAGDCCCGCCGCATCATCCCCCGTCCTTTCTCDTGT 2 GG 2 GGGCAACGCTGCGC 1.000000 125 AACGCTGCGGAACAGCCAATGCTGATCGCCCAGDGACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 126 AGCACCGCGGAACAGCTGGGGCTCGTCGCCCAADGCCGCCGCATCATCCCACGAACGTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 127 AGTACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTICAT 4 AG 2 AGACAGTAGCAGAT 1.000000 128 AGTACCAAGGAATAGACGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 4 AG 2 AGACAGTAGCAGAT 1.000000 129 AGTAGCACAATGCAGCTGGGTCTGGTCGCCCGAICACGCCGCATCATCTCCCGTCCTTTCCTDCAT 4 GG 2 AGGCGACGCCGGGC 1.000000 130 AGTAGCACAATGCAGCTGGGTCTGGTCGCCTAGDCCCGCCGCATCATCCCACGAACGTTCCCDTGT 3 GA 2 ACGCGACGCCGGGC 1.000000 131 AGTAGCACAATGCAGCTGGGTCTGGGTACCTAGDCCCGCCTCCGCGCCTCATCTCCGCACCCITAT 2 GG 2 AGGCGACGCCGGGC 1.000000 132 AGTAGCACAATGCAGCTGGGTCTGGGTACCTAGDCCCGCCTCCGCGCCTCATCTCCGCACCTITAT 3 GG 4 AGGCGACGCCGGGC 1.000000 133 AGTAGCACAATGCAGCTGGGTCTGGGTACCTAGDGACGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 2.000000 134 AGTAGCACAATGCGCCCGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTCCGTTTCTITAT 4 AG 2 AGACAGTAGCAGAT 1.000000 135 AGTAGCACAATGCGCCCGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 4 AG 2 AGACAGTAGCAGAT 1.000000 136 AGTAGCACAATGCGCCCGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 4 AG 2 AGACAGTAGCAGGC 1.000000 137 AGTAGCACAATGCGCCCGGGGCTCGTCGCTCGAICCTTCTGTATTGCATTACGTCAGCACCCDTGT 3 GG 2 AGGTGACGCTGCGC 1.000000 138 AGTAGCACAATGCGCCCAATGCTGATCGCCCAADGACGACTCCGCGCCTCACGAACGCTCCCDTGT 3 GG 2 AGGTGACGCCGGGC 1.000000 139 AGTAGCACAATGCGCCCAATGCTGATCACCTAGDCACGCCGCATCATCCCACGAACGTTCCCDTGC 2 GA 2 ACGCGACGCCGGGC 1.000000 140 AGTAGCACAATGCGCCCAATGCTGATCACCTAGDCACTCCGCATCATCCCCCGTCCTTTCCTITAT 3 GG 4 AGGCGACGCCGGGC 1.000000 141 AGTAGCACAATGCGCCTGGGGCTCGTCGCCCGAICACGCCGCATCATCCCACGAACGTTCCCDTGC 3 GA 2 ACGCGACGCCGGGC 1.000000 142 AGTAGCACAATGCGCCTGGGGCTCGTCGCCTAGDCACGCCGCATCATCCCCCGTCCTTTCTCDTGT 2 GG 2 GGGCAACGCTGCGC 1.000000 143 AGTAGCACAATGCGCCTGGGGCTCGTCGCCTAGDCCCGCCGCATCATCCCACGAACGTTCCCDTGC 2 GA 2 ACGCGACGCCGGGC 3.000000 144 AGTAGCACAATGCGCCTGGGGCTCGTCGCCTAGDCCCGCCGCATCATCCCACGAACGTTCCCDTGC 3 GA 2 ACGCGACGCCGGGC 1.000000 145 AGTAGCACAATGCGCCTGGGGCTCGTCGCCTAGDGCCGCCGCATTGCATCCCGTCCGTACCCITAT 2 GG 2 AGGCGACGCCGGGC 1.000000 146 AGTAGCACAATGCGCCTGGGGCTCGTCGCTCAAIGCCTCCTCCGCGCCTCATCTACGTTTCTITAT 3 AG 2 AGACAGTAGCAGGC 1.000000 147 AGTAGCACAATGCGCCTGGGTCTGGGTACCCAADGACGCCGCATCATCCCCCGTCCTTTCCCDTGT 4 GG 2 AGGCGACGCCGGGC 1.000000 148 AGTAGCACAATACGCCCGATGCCGGTCATCCAAIGCCTACTCCGCGCCTCACGAACGTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 149 AGTAGCGCGGAACAGCCAATGCTGATCACCCAAICCCGCCGCATCATCCCCCGTCCTTTCCCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 150 AGTAGCGCGGAACAGCCAATGCTGATCACCCAAICCTTCTGTATTGCATTACGTCAGCACCCDTGT 3 GG 2 AGGTGACGCCGGGC 1.000000 151 AGTAGCGCGGAACGCCCGGGGCTCGTCGCCTAADCCCGCCGCATCATCCCCCGTCCTTTCCCDTGT 2 GG 2 GGGCAACGCCGCGC 1.000000 152 GACACCACAGTGCACCCGGGGTCGGTCATCCGAICCTTACGCATCATCCCATGAACGTTCCCITAT 3 AG 2 AGACAGTAGCAGGC 1.000000 153 GACACCACAGTGCACCCGGGGTCGGTCATCTAAICCTTACGCATCATCCCATGAACGTTCCCITAT 2 GG 2 AGGCGACGCCGGGC 1.000000 154 GACACCACAGTGCACCCGGGGTCGGTCATCTAAIGCTTACGCATCATCCCATGAACGTTCCCITAT 2 GG 2 AGGCGACGGCGGGC 1.000000 155 GACACCACAGTGCACCCGGGGTCGGTCATCTAAIGCTTACGCATCATCCCATGAACGTTCCCITAT 2 GG 2 AGGCGACGCCGGGC 4.000000 156 GACGCTGCAATACGCCTGGGGCTCGTCGCCCAAICCCGCCGCATCATCCCCCGTCCTTTCTCDTGT 3 GG 2 AGGCGACGCCGGGC 1.000000 157 GGTGCCACAATGCAGCCAATGCTGATCGCCCAGDGACGCCGCATCATCCCCCGTCCTTTCCCDTGT 2 GG 2 GGGCAACGCCGGGC 2.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY D001: (11,32) D002: (28,157) D003: (60,141) D004: (27,129) D005: (29,95) D006: (92,132) D007: (76,110) D008: (105,157) D009: (1,151) D010: (106,108) D011: (72,103) D012: (52,137) D013: (68,75) D014: (25,102) D015: (49,101) DY01: (26,156) DY02: (48,64) DY03: (77,104) DY04: (51,113) DY05: (80,138) DY06: (47,55) DY07: (117,123) DY08: (78,145) DY09: (87,110) DY10: (99,131) DY11: (73,122) DY12: (121,133) E101: (97,109) E102: (56,88) E103: (59,120) E104: (53,111) E105: (87,130) E106: (42,62) E107: (61,93) E108: (3,127) E109: (41,62) E110: (43,94) E111: (2,150) E112: (41,50) E113: (4,112) E114: (9,54) E115: (66,58) E116: (79,147) E117: (82,124) E118: (30,40) E119: (81,96) E120: (118,10) E121: (12,74) E122: (61,63) H101: (16,134) H102: (57,140) H103: (5,65) H104: (8,46) H105: (81,91) H106: (20,20) H107: (33,126) H108: (13,148) H109: (36,61) H110: (70,83) H111: (33,65) H112: (93,37) H113: (22,69) H114: (39,89) H115: (82,84) H116: (33,93) H117: (20,42) H118: (19,85) H119: (70,136) H120: (38,61) H121: (18,34) H122: (32,135) X101: (13,86) X102: (15,154) X103: (17,120) X104: (153,152) X105: (21,144) X106: (114,155) X107: (6,71) X108: (44,120) X109: (24,155) X110: (119,142) X111: (14,100) X112: (31,90) X113: (20,115) X114: (21,149) X115: (107,133) X116: (139,143) X117: (143,155) X118: (23,116) X119: (35,146) X120: (20,128) X121: (8,125) X122: (7,45) X123: (67,98) X124: (143,155) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 D001 A A C A C C A A G G A A T A G A C G G G G C T C G T C G C [T] C [A] A [I] C A C G C C G C A T C A T C T C C C G T C C T T T C C T D C A T 4 G G 2 A G A C G G T A G C A G A T A A C A C C G C G G A A C A G C C G G G G C T C G T C G C C C A A D G C C G C C G C A T T G C A C C C T C T C C T T T C C C D T G T 3 G G 2 G G G C A G T A G C A G A T 0 D002 A A C A C C G C A A T G C A G C T G G G T C T G G [G] [T] [A] C C C A A D C C T G C C G C A T C A T C T C C C G T C C T T T C T C D T G T 3 G A 2 A C G C G A C G C C G G G C G G T G C C A C A A T G C A G C C A A T G C T G A T C G C C C A G D G A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 2 G G 2 G G G C A A C G C C G G G C 0 D003 A (A) (C) A (C) C (G) C (G) (G) (A) (A) C (A) (G) C (C) (A) (A) (T) G C T (G) (A) T C [A] C C C (A) A (D) C C C G A C T C C G C G C C T C C T G T C C G T A C C C I T A T (2) G G 2 A G G C G A C G C C G G G C A (G) (T) A (G) C (A) C (A) (A) (T) (G) C (G) (C) C (T) (G) (G) (G) G C T (C) (G) T C [G] C C C (G) A (I) C A C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C (3) G A 2 A C G C G A C G C C G G G C 0 D004 A (A) (C) A (C) C A (A) (G) (G) (A) (A) (T) A G C (C) G G G (G) C T (C) G T C G C [T] C (A) A I (G) (C) C (T) C C G C A T C A T C T C (A) C G (A) (A) C (G) T T C C T D T A T 3 (A) G 2 A G (A) C (A) (G) (T) (A) (G) C (A) G G C A (G) (T) A (G) C A (C) (A) (A) (T) (G) (C) A G C (T) G G G (T) C T (G) G T C G C [C] C (G) A I (C) (A) C (G) C C G C A T C A T C T C (C) C G (T) (C) C (T) T T C C T D C A T 4 (G) G 2 A G (G) C (G) (A) (C) (G) (C) C (G) G G C 0 D005 A A C A C C G C G G A A C A G (A) C G G G G C T C G T C G C T C A A I G C C T C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C A A C A C C G C G G A A C A G (C) T G G G T C T G G G T A C C T A G D G C T T C T G T A T T G C A T T A C G T C A G C A C C T D T G T 3 G G 4 A G G T G A C G C C G G G C 0 D006 A (A) (C) A (C) C (G) C (G) (G) (A) (A) C A G C T G G G T C T G G G T A C C T A G D C C C G C C T C C G C G C C (C) C A T G T C C G C A C T C I T G T 2 G G 2 G G G C A A C G C C G C G C A (G) (T) A (G) C (A) C (A) (A) (T) (G) C A G C T G G G T C T G G G T A C C T A G D C C C G C C T C C G C G C C (T) C A T C T C C G C A C C T I T A T 3 G G 4 A G G C G A C G C C G G G C 0 D007 A A C A C C G C G G A A C A G C T G G G T C T G G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C [C] I T A T 4 A G 2 A G A C A A C G C (T) G G G C A A C A C C G C G G A A C G C C T G G G G C T C G G T A C C T A G D C A C G C C G C A T C A T C C C C C G T C C T T T C T C D T G T 3 G G 2 A G G C G A C G C (C) G G G C 0 D008 A A C A C C G C G G A A C [G] C C [C] [G] [G] [G] G C T [G] [A] T C [A] C [C] C A A I G A C G C C G C A T C A T C C C C C G T C C T T T C T C D T G T 2 G G 2 G G G C A A C G [C] T G C G C G G T G C C A C A A T G C A G C C A A T G C T G A T C G C C C A G D G A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 2 G G 2 G G G C A A C G C C G G G C 0 D009 A A C A C C A C A A T G C A G C T G G G T C T G G G T A C C T A G D G A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C A G T A G C G C G G A A C [G] C C C G G G G C T [C] G T C G C C T A A D C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 2 G G 2 G G G C A A C G C C G C G C 0 D010 A A C A C C G C G G A A C G C C C G G G G C T (C) G T C G C C C A G D G C C G C C G C A T T G C A T C A C G T C C T T T C T C D T G T (3) G G 2 G G G C A A C G C C G C G C A A C A C C G C G G A A C G C C T G G G G C T (G) G T C G C [T] C A A I G C C T C C T C C T T G C C C C A C G T C C G C A C T C I T A T (2) A G 2 A G A C A A C G C C G G G C 0 D011 A A C A C C G C G G A A C (A) G C T G G G G C T C G T C A C C C A A D (C) (C) T T C T G T A T T G C A T T A C G T C A G C A C C T D T G T 3 G G 4 A G G T G A C G C C G G G C A A C A C C G C G G A A C (G) G C T G G G T C T G G G T A C C C A A D (G) (A) C G C C G C A T C A T C C C C C G T C C T T T C C C D T G [T] 2 G A 2 A C G C G A C G C C G G G C 0 D012 A A C A (C) C (G) C (G) (G) (A) (A) C (A) (G) C C G G G G T T G G T C A C C C A A D G A C G C C G C A T C A T C C C A C G A A C G T T C T C D T G [C] 2 G A 2 G C G C G A C G C C G G G C A [G] [T] A (G) C (A) C (A) (A) (T) (G) C (G) (C) C C G G G G C T C G T C G C T C G A I C C T T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C T G C G C 0 D013 A A C A C C G C G G A A C A G C [C] (A) (A) (T) (G) C T G (A) G T A C C T A G D G A C G C C T C C G C G C C C C A T C T C C G C A C C C I T A T 3 G G 2 A G G C G A C G C C G G G C A A C A C C G C G G A A C A G C [T] (G) (G) (G) (T) C T G (G) T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C C I T A T 4 A G 2 A G A C A A C G C C G G G C 0 D014 A A C A C C (A) (A) G G A A (T) (A) G (A) T G G G T C T G G T C G C C T A G D C A C G C C G C A T C A T C C C A C G A A C G T T C C T D T G T 2 G G 2 A G G C G A C G C C G G G C A A C A C C (G) (C) G G A A (C) (G) G (C) T G G G T C T G G T C A C C C A A D G A C G A C T C C G C G C C T C A C G T C C G T A C C T I T A T 2 G G 2 A G G C G A C G C C G G G C 0 D015 A A C A C C G C G G A A C A G C C G G G G C T C G G T A C C C A A I C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 3 A G G C G A C G C C G G G C A A C A C C G C G G A A C [G] G C T G G G T C T G G T C A C C C A A D G A C G A C T C C G C G C C T C C C G T C C G T A C C T I T A T 2 G G 2 G G G C A A C G C C G G A C 0 DY01 A A C A C C A A G G A A T A G A T G G G T C T G G G T A C C T A G D C C C G C C G C A T C A T C C C C C G T C C T T T C T C D T G T 2 G G 2 G G G C A A C G C T G C G C G A C G C T G C A A T A C G C C T G G G G C T [C] G T C G C [C] C A A I C C C G C C G C A T C A T C C C C C G T C C T T T C T C D T G T 3 G G [2] A G G C G A C G C [C] G G G C 0 DY02 A A C A C C G C G G A A C A G C C (G) (G) (G) G C T (C) (G) T C A C C C A A D C C C T A C T C C G C G C C C C A C G A A C G C T C C C D T G T 2 G G 2 A G G C G G T A G C A G A T A A C A C C G C G G A A C A G C C (A) (A) (T) G C T (G) (A) T C A C C C A A I G C C G A C T C C G C G C C T C C T G T C C G T A C C C D T G T 2 G G 2 A G G C G G T A G C A G A T 0 DY03 A A C A C C G C G G A A C (A) G C T G G G T C T G G (T) (C) A C C C A A (I) G C C G A C T C C G C G C C T C C T G T C C G C A C (T) C D T G T 2 G G 2 A G G C G A C G C C G G G C A A C A C C G C G G A A C (G) G C T G G G T C T G G (G) (T) A C C C A A (D) G C C T A C T C C G C G C C T C A C G A A C G T T C (C) C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 DY04 A A C (A) C C (G) C G G A A (C) A G C C G G G G C T C G G T A C T T A G (D) C (C) C G C C G C A T C A T C T C C C G T C C T T T C C T D T A T (3) G G 2 A G A C A G T A G C A G A T A A C (G) C C (A) [A] G G A A (T) A G C C G G G G C T C G T C A C T T A G (I) C (A) C G C C G C A T C A T C T C C C G T C C T T T C C T D T A T (2) G G 2 A G A C A G T A G C A G A T 0 DY05 A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C C A A D C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G [T] 3 G G 2 (G) G G (C) (A) A C G C C G G G C A G T A G C A C A A T G C G C C C A A T G C T G A T C G C C C A A D G A C G A C T C C G C G C C T C A C G A A C G C T C C C D T G T 3 G G 2 (A) G G (T) (G) A C G C C G G G C 0 DY06 A A C A C C G C G G A A C A G C C G (G) (G) G C T (C) (G) T C A C C C A A D C C C T A C T C C G C G C C C C A C G A A C G T T C T C D T G T 3 G G 2 G G G C A A C G C T G C G C A A C A C C G C G G A A C A G C C G (A) (T) G C T (G) (A) T C A T C C A A I G C C T A C T C C G C G C C T C A C G A A C G T T C C T I T A T 4 A G 2 A G A C A G T A G C A G A T 0 DY07 A A C G C T A A G G A A T A G A C A A T G C T G A T C A C C C A A D C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 2 G G 2 G G G C A A C G C C G G G C A A C G C T A A G G A A T A G A T G G G T C T G G T C A C C C A A I G C C G A C T C C G C G C C T C C T G T C C G T A C C C D T G T 2 G G 3 A G G C G A C G C C G G G C 0 DY08 A A C A C C G C G G A A C A G C T G G G T C T G G T C A C C T G A I (C) (A) C G C C G C A T (C) (A) (T) (C) (C) C C C G T C C (T) T (T) C C C (D) T (G) (C) (3) G G 2 (G) G G C (A) A C G C C G G G C A G T A G C A C A A T G C G C C T G G G G C T C G T C G C C T A G D (G) (C) C G C C G C A T (T) (G) (C) (A) (T) C C C G T C C (G) T (A) C C C (I) T (A) (T) (2) G G 2 (A) G G C (G) A C G C C G G G C 0 DY09 A A C A C C G C G G A A C (A) (G) C T G G G (T) C T (G) G G T A C C T A G D C A C G C C G C A T C A T C C C C C G T C C T T T C (C) C D T G T 2 G G 2 G G G C A G T A G C G G G C A A C A C C G C G G A A C (G) (C) C T G G G (G) C T (C) G G T A C C T A G D C A C G C C G C A T C A T C C C C C G T C C T T T C (T) C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 DY10 A (A) (C) A (C) C (G) C (G) (G) (A) (A) C A C C C G G G G T T G G G T A C [C] T A G D C C C G C C G C A T C A T C T C C C G T C C T T T C T C D T G T (3) G G 2 A G G C G G T A G C G G G C A (G) (T) A (G) C (A) C (A) (A) (T) (G) C A G C T G G G T C T G G G T A C C T A G D C C C G C C T C C G C G C C T C A T C T C C G C A C C C I T A T (2) G G 2 A G G C G A C G C C G G G C 0 DY11 A A C (A) C (C) (G) C G G A A (C) A G (C) T G G G T C T G G T C G C C C A A D G C C G C C G C A T T G C A T C C T C T C C T T T C C C D T G T 3 G G 2 G G G C A G T A G C A G A T A A C (G) C (T) (A) [A] G G A A (T) A G (A) T G G G T C T G G T C A C C C A A I G C C G A C T C C G C G C C T C C T G T C C G T A C C C D T G T 2 G G 2 A G G C G G T A G C A G A T 0 DY12 A A C G C T A A G G A A T A G A C A A T G C T G A G T A C C (C) A (A) D (C) (C) C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T (2) G (A) 2 A (C) G C G A C G C C G G G C A G T A G C A C A A T G C A G C T G G G T C T G G G T A C C (T) A (G) D (G) (A) C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T (3) G (G) 2 A (G) G C G A C G C C G G G C 0 E101 A A C A C C G C G G A A C A G C T G G G T C T (C) G T C G C T C A A I G C C T C C T C C T T G C C T C A C G T C C G C A C C C I T A T [2] G G 2 (G) G G (C) (A) A C G C (T) G (C) G C A A C A C C G C G G A A C G C C T G G G G C T (G) G T C G C [T] C A A I G C C T C C T C C T T G C C C C A C G T C C G C A C T C I T A T [3] [A] G 2 (A) G G (T) (G) A C G C (C) G (G) G C 0 E102 A A C A C C G C G G A A C A G C (C) G (A) (T) (G) C (C) G G (T) (C) A C (T) (C) (G) (A) (I) C C T T C T G T A T T G C A T T A C G T C A G C A C C (T) D T (A) T 3 G G (4) A G G T G A C G C C G G G C A A C A C C G C G G A A C A G C (T) G (G) (G) (T) C (T) G G (G) (T) A C (C) (T) (A) (G) (D) C A C G C C G C A T C A T C C C C C G T C C T T T C C (C) D T (G) T 3 G G (2) A G G C G A C G C C G G G C 0 E103 A A C A C C G C G G A A C A G C C A A T G C T G A T C G C C C A A D G C C T C C [T] C C T T G C C T C A C G T C C G C A C C C I (C) A T 3 A G 2 A G A C A G T A G C A C G C A A C G C T A A G G A A T A G A C A A T G C T G A T C A C C C G A I C A C G C C G C A T C A T C C C C C G T C C T T T C T C D (T) G T 2 G G 2 G G G C A A C G C T G C G C 0 E104 A A C A C C G C G G A A C A G C C G G G G T C G G T C A C C C A A D G A C G C C G C A T C A T C C C A C G A A C G T T C (C) (T) D T G T 3 G G (4) (A) G G C [G] A C G C C G (G) G C A A C A C C G C G G A A C G C C T G G G G C T C G G T A C C T A G D C A C G C C G C A T C A T C C C C C G T C C T T T C (T) (C) D T G T 3 G G (2) (G) G G C A A C G C C G (C) G C 0 E105 A (A) (C) A (C) C G C G G A A C A G C T G G G T C T G G G T A C C T A G D C A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 2 G G 2 G G G C A G T A G C G G G C A (G) (T) A (G) C A C A A T G C A G C T G G G T C T G G T C G C C T A G D C C C G C C G C A T C A T C C C A C G A A C G T T C C C D T G T 3 G A 2 A [C] G C G A C G C C G G G C 0 E106 A A C A C C G C G G A A C A G C C G G G G C T C G T C G C T C A A I G C C T C C T C C T T G C C T C A C G T C C G C A C C T I C A T 4 A G 2 A G A C A G T A G C A G A T A A C A C C G C G G A A C A G C C A A T G C T G A T C A C C C A A I C C T T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C C G G G C 0 E107 A A C A C C G C G G A A C A G C C A A T G C T G A T C A C C C A A D C C T T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C C G G G C A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C T A G D G A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 E108 A (A) (C) A C C A C A A T G C G C C T G G G G C T C G T C G C C T A G D C A C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 3 G A 2 A C G C G A C G C C G G G C A (G) (T) A C C A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I C A T 4 A G 2 A G A C A G T A G C A G A T 0 E109 A A C A C C G C G G A A C A G C C G G G G C T C G T C G C T C A A I G C C T C C G C C T T G C C T C A C G T C C G C A C C T I C A T 4 A G 2 A G A C A G T A G C A G A T A A C A C C G C G G A A C A G C C A A T G C T G A T C A C C C A A I C C T T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C C G G G C 0 E110 A A C A C C G C G G A A C A G C C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I (C) A T 4 A G 2 A G A C A G T A G C G G G C A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C T A G D G A C G C C G C A T C A T C C C C C G T C C T T T C C C D (T) G T 3 G G 3 A G G C G A C G C C G G G C 0 E111 A A C A C C A C A A T G C G C C C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A C G T A C G T T T C T I T A T [4] A G 2 A G A C A G T A G C G C G C A G T A G C G C G G A A C A G C C A A T G C T G A T C A C C C A A I C C T T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C C G G G C 0 E112 A A C A C C G C G G A A C A G C C G G G G C T C G T C G C T C A A I G C C T C C G C C T T G C C T C A C G T C C G C A C C T I C A T 4 A G 2 A G A C A G T A G C A G A T A A C A C C G C G G A A C A G C C G G G G C T C G G T A C T C A G D C A C G C C G C A T C A T C C C C C G T C C T T T C T C D T G T 3 G G 2 A G G C G A C G C T G C G C 0 E113 A A C A C C A C A A T G C G C C T G G G T C T G G G T A C C T A A I C A T T C T G T A T T G C A C T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C C G G G C A A C A C C G C G G A A T A G A T G G G T C T G G T C G C T C A A I G C C T C C T C C G C G C C T C A C G T A C G T T T C T I T A T 4 A G 2 A G A C A A C G C C G G G C 0 E114 A A C A C C (A) C [G] [G] [A] [A] (T) A G (A) C G A G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A C G T A C G T T T C T I T A T 4 A G 2 A G A C A (G) (T) (A) (G) C G G G C A A C A C C (G) C [G] [G] [A] [A] (C) A G (C) C G A G G C T C G T C G C T C A A I G C C T C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 3 A G G C G (A) (C) (G) (C) C G G G C 0 E115 A A C A C C G C G G A A C A G C C A A (T) G C T [G] [A] T C [A] C C T A G D (C) C T T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C C G G G C A A C A C C G C G G A A C A G C C A A (G) G C T [G] [A] [T] [C] [A] C C T A G D (G) C C T C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C 0 E116 A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C C A A D (C) A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 4 G G (3) A G G C G A C G C C G G G C A G T A G C A C A A T G C G C C T G G G T C T G G G T A C C C A A D (G) A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 4 [G] G (2) A G G C G A C G C C G G G C 0 E117 A A C (A) C (C) (G) [C] G G A A (C) A G (C) T G G G T C T G G G T A C C C A A I C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 3 A G G C G A C G C C G G G C A A C (G) C (T) (A) [A] G G A A (T) A G (A) T G G G T C T G G G T A C C T A G D C C C G C C G C A T C A T C C C C C G T C C T T T C T C D T G T 2 G G 2 G G G C A A C G C T G C G C 0 E118 A A C A C C G C G G A A C A G C C G G G G C T G A T C A C C C A A D C C T T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G (G) (T) (A) (G) C G G G C A A C A C C G C G G A A C A G C C G G G G C T C G T C G C T C A A I G C C T C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 3 A G G C G (A) (C) (G) (C) C G G G C 0 E119 A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C C A A D C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 3 A G G C G A C G C C G G G C A A C A C C G C G G A A C A G C T G G G T C T G G G T A C T C A A I G C C T C C T C C T T G C C T C A C G T C C G C A C C T I C A T 4 A G 2 A G A C A G T A G C A G A T 0 E120 A A C (G) C (T) A A G G A A T A G A C (A) (A) (T) G C T (G) (A) T C (A) C [C] C A A I G A C G C C G C A T C A T C C C C C G T C C T T T C T C D T G T 2 G G 2 G G G C A A C G G T G C G C A A C (A) C (C) A A G G A A T A G A C (G) (G) (G) G C T (C) (G) T C (G) C [C] C A A D G C C T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G G T A G C G G G C 0 E121 A A C A C C (A) [A] G G A A (T) A G (A) (C) G G G (G) C T (C) G T C G C T C A A I G C C T C C G C A T C A T C C C C C G T C C T T T C C C D T G T 2 G G 2 G G G C A A C G C C G G G C A A C A C C (G) C G G A A (C) A G (C) (T) G G G (T) C T (G) G T C G C T C A A I G C C T C C T C C T T G C C T C A C G T C C G C A C C T I T A T 3 A G 2 A G A C A G T A G C A G G C 0 E122 A A C A C C G C G G A A C A G C C A A T G C T G A T C A C C C A A D C C T T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C C G G G C A A C A C C G C G G A A C A G C C A A T G C T G A T C A C C C A A I G A C G C C G C A T C A T C C C C C G T C C T T T C T C D T G T 2 G G 2 G G G C A A C G C T G C G C 0 H101 A A C A C C A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T C C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T A G T A G C A C A A T G C G C C C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T C C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T 0 H102 A (A) (C) A (C) C (G) C (G) (G) (A) (A) C (A) (G) C C G A T G C C G G T C A T C C A A I G C C T A C T C C G C G C C T C A C G A A C G T T C C (C) (D) T (G) T 3 G G (2) A G G C G A C G C C G G G C A (G) (T) A (G) C (A) C (A) (A) (T) (G) C (G) (C) C C A A T G C T G A T C A C C T A G D C A C T C C G C A T C A T C C C C C G T C C T T T C C (T) (I) T (A) T 3 G G (4) A G G C G A C G C C G G G C 0 H103 A A C A C C A C A A T G T A G A C G G G G C T C G T C G C [C] C A A D G C C T C C T C C G C G C C T C A C C T A C G T T T C T I T A T 3 A G 2 A G A C A G T A G C G G G C A A C A C C G C G G A A C A G C C A A T G C T G A T C A C [C] C G A I C C T T C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C 0 H104 A A C A C C A C A A T G T A G A C A A T G C T G A T C A C [T] T A G I C C C T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C C G G G C A A C A C C G C G G A A C A G C C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C G G G C 0 H105 A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C C A A D C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 3 A G G C G A C G C C G G G C A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C T A G D C C C G C C G C A T C A T C C C C C G T C C T T T C T C D T G T 2 G G 2 G G G C A A C G C T G C G C 0 H106 A A C A C C A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T A A C A C C A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T 0 H107 A (A) C A C C G C G G A A C A G C (C) G G G G C T C G T C G C C C A A (I) G C C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C A (G) C A C C G C G G A A C A G C (T) G G G G C T C G T C G C C C A A (D) G C C G C C G C A T C A T C C C A C G A A C G T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 H108 A (A) (C) A (C) C A [A] (G) [G] (A) A (T) (A) (G) (A) C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A C G T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C G G G C A (G) (T) A (G) C A C (A) A (T) A (C) (G) (C) (C) C G A T G C C G G T C A T C C A A I G C C T A C T C C G C G C C T C A C G A A C G T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 H109 A A C A C C G C G G A A C A G C C G G G G C T C G T C G C C T A G D G A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C A A C A C C G C G G A A C A G C C A A T G C T G A T C A C C C A A D C C T T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C C G G G C 0 H110 A A C A C C G C G G A A C A G C T G G G G C T C G T C G C C C G G I C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C C A G D C A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 3 A G G C G A C G C C G G G C 0 H111 A A C A C C G C G G A A C A G C C G G G G C T C G T C G C [C] C A A I G C C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C A A C A C C G C G G A A C A G C C A A T G C T G A T C A C [C] C G A I C C T T C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C 0 H112 A A C A C C G C G G A A C A G C (T) G G G (T) C T (G) G (G) (T) (A) C C T A G D G A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C A A C A C C G C G G A A C A G C (C) G G G (G) C T (C) G (T) (C) (G) C [C] T A G I G C C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G G 2 A G A C A G T A G C A G G C 0 H113 A A C A C C (A) [A] G G A A (T) A G (A) C G G G G C T C G T C G C T C A A I G (C) C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C G G G C A A C A C C (G) C G G A A (C) A G (C) T G G G G C T C G T C G C C C G G I C (A) C G C C G C A T C A T C C C C T G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 H114 A A C A C C G C G G A A C A G C C G G G G C T C G T C G C [T] C A A I G C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G G (C) A G C A G A T A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C T A G D C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G G (T) A G C A G A T 0 H115 A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C C A A I C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 3 A G G C G A C G C C G G G C A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C C A G D G A C G C C G C A T C A T C C C C C G T C C G T T C [T] C D T G T 2 G G 2 G G G C A A C G C [T] G C G C 0 H116 A A C A C C G C G G A A C A G C C G G G G C T C G T C G C [C] C A A I G C C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C T A G D G A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 H117 A A C A C C A [A] G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T A A C A C C G C G G A A C A G C C G G G G C T C G T C G C T C A A I G C C T C C T C C T T G C C T C A C G T C C G C A C C T I C A T 4 A G 2 A G A C A G T A G C A G A T 0 H118 A A C A C C A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 3 G G (3) A G G C G A C G C C G G G C A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C C G A I C A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G (2) A G G C G A C G C C G G G C 0 H119 A (A) (C) A (C) C (G) C (G) (G) (A) (A) C (A) (G) C T G G G G C T C G T C G C C C G G I C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C A (G) (T) A (G) C (A) C (A) (A) (T) (G) C (G) (C) C C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G G C 0 H120 A A C A C C G C G G A A C A G C C G G G G C T C G T C G C [T] C A A I G A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C A A C A C C G C G G A A C A G C C A A T G C T G A T C A C C C A A D C C T T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C C G G G C 0 H121 A A C A C C A [A] G G A A T A G A C G G G G C T C G T C G C T C A (A) I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 2 A G 2 A G A C A G T A G C A G A T A A C A C C G C G G A A C A G C C G G G G C T C G T C G C C C A (G) D G C C G C C G C A T T G C A C C C T C T C C T T T C C C D T G T 3 G G 2 G G G C A G T A G C A G A T 0 H122 A (A) (C) A (C) C (G) C (G) (G) (A) (A) C (A) (G) C C G G G G C T C G T C G C C C A A D G C C G C C G C A T T G C A C C C T C T C C T T T C C C D T G T 3 G G 2 G G G C A G T A G C A G A T A (G) (T) A (G) C (A) C (A) (A) (T) (G) C (G) (C) C C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T 0 X101 A A C A C C A [A] G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A C G T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C G G G C A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C T A A I C A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 X102 A A C A C C A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T G T A C G T T T C T I T A T 3 A G 2 A G A C A G T A G C G G G C [G] A C A C C A C A G T G C A C C C G G G G T C G G T C A T C T A A I G C T T A C G C A T C A T C C C A T G A A C G T T C C C I T A T 2 G G 2 A G G C G A C G G C G G G C 0 X103 A A C A C C A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T C C [T] I T A T 3 A G 2 A G A C A G T A G C G C G C A A C G C T A A G G A A T A G A C A A T G C T G A T C A C C C G A I C A C G C C G C A T C A T C C C C C G T C C T T T C T C D T G T 2 G G 2 G G G C A A C G C T G C G C 0 X104 [G] A C A C C A C A G T G C A C C C G G G G T C G G T C A T C (T) (A) A I C C T T A C G C A T C A T C C C A T G A A C G T T C C C I T A T 2 G G 2 A G G C G A C G C C G G G C [G] A C A C C A C A G T G C A C C C G G G G T C G G T C A T C (C) (G) A I C C T T A C G C A T C A T C C C A T G A A C G T T C C C I T A T 3 A G 2 A G A C A G T A G C A G G C 0 X105 A A C A C C A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G G C A G T A G C A C A A T G C G C C T G G G G C T C G T C G C C T A G D C C C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 3 G A 2 A C G C G A C G C C G G G C 0 X106 A A C G C T A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C G A C A C C A C A G T G C A C C C G G G G T C G G T C A T C T A A I G C T T A C G C A T C A T C C C A T G A A C G T T C C C I T A T 2 G G 2 A G G C G A C G C C G G G C 0 X107 A A C A C C A C A A T G T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A C G T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G G C A A C A C C G C G G A A C A G C T G G G G C T C G T C G C C T A G D C A C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 3 G A 2 A C G C G A C G C C G G G C 0 X108 A A C A C C G C G G A A C A G C C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 3 A G 2 A G A C A G T A G C G C G C A A C G C T A A G G A A T A G A C A A T G C T G A T C A C C C G A I C A C G C C G C A T C A T C C C C C G T C C T T T C T C D T G T 2 G G 2 G G G C A A C G C T G C G C 0 X109 A A C A C C A A G G A A T A G A T G G G G C T C G T C G C C T A A D C A C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C [3] G A 2 A C G C G A C G C C G G G C G A C A C C A C A G T G C A C C C G G G G T C G G T C A T C T A A I G C T T A C G C A T C A T C C C A T G A A C G T T C C C I T A T 2 G G 2 A G G C G A C G C C G G G C 0 X110 A A C G C T A A G G A A T A G A C A A T G C T G A T C A C C C A G D C A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 3 A G G C G A C G C C G G G C A G T A G C A C A A T G C G C C T G G G G C T C G T C G C C T A G D C A C G C C G C A T C A T C C C C C G T C C T T T C T C D T G T 2 G G 2 G G G C A A C G C T G C G C 0 X111 A A C A C C (A) [A] G G A A (T) A (G) (A) C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A C C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T A A C A C C (G) C G G A A (C) A (C) (C) T G G G T C T G G G T A C C T A G D C A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 X112 A A C A C C G C G G A A C A G C C G G G G C T C G T C G C [C] (C) A (A) D C C T T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C C G G G C A A C A C C G C G G A A C A G C T G G G T C T G G G T A C C (T) A (G) D C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 X113 A A C A C C A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T A A C G C T A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T 0 X114 A A C A C C A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G G C A G T A G C G C G G A A C A G C C A A T G C T G A T C A C C C A A I C C C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 X115 A (A) (C) A (C) C (G) C (G) (G) (A) (A) C G C C T G G G G C T G G T C G C [C] T A G D C A C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C A (G) (T) A (G) C (A) C (A) (A) (T) (G) C A G C T G G G T C T G G G T A C C T A G D G A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 X116 A G T A G C A C A A T G C G C C C A A T G C T G A T C A C C T A G D C A C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C A G T A G C A C A A T G C G C C T G G G G C T C G T C G C C T A G D C C C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C 0 X117 A G T A G C A C A A T G C G C C T G G G G C T C G T C G C C T A G D C C C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C G A C A C C A C A G T G C A C C C G G G G T C G G T C A T C T A A I [G] C T T A C G C A T C A T C C C A T G A A C G T T C C C I T A T 2 G G 2 A G G C G A C G C C G G G C 0 X118 A A C (A) C (C) A A G G A A T A G A C G A G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T [C] T C C G T T T C T I T A T 3 A G 2 A G A C A G T A G C G G G C A A C (G) C (T) A A G G A A T A G A C G A G G C T C G T C G C [C] T A G D C A C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C 0 X119 A A C A C C G C G G A A C A G C C G G G G C T C G T C G C C T A G D C A C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C A G T A G C A C A A T G C G C C T G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 3 A G 2 A G A C A G T A G C A G G C 0 X120 A A C A C C A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T A G T A C C A A G G A A T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T 0 X121 A A C A C C A C A A T G T A G A C A A T G C T G A T C A C [T] T A G I C C C T C T G T A T T G C A T T A C G T C A G C A C C C D T G T 3 G G 2 A G G T G A C G C C G G G C A A C G C T G C G G A A C A G C C A A T G C T G A T C [G] C C C A G D G A C G C C G C A T C A T C C C C C G T C C T T T C C C D T G T 3 G G 2 A G G C G A C G C C G G G C 0 X122 A A C A C C A C A A T G T A G A C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T (G) T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T A A C A C C G C G G A A C A G C C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T (C) T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G A T 0 X123 A A C A C C G C G G A A C A (G) C C A A T G C T G A T C A C [T] C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G [A] [T] A A C A C C G C G G A A C A (C) C C G G G G C T C G T C G C T C A A I G C C T C C T C C G C G C C T C A T C T A C G T T T C T I T A T 4 A G 2 A G A C A G T A G C A G [A] [T] 0 X124 A G T A G C A C A A T G C G C C T G G G G C T C G T C G C C T A G D C C C G C C G C A T C A T C C C A C G A A C G T T C C C D T G C 2 G A 2 A C G C G A C G C C G G G C G A C A C C A C A G T G C A C C C G G G G T C G G T C A T C T A A I G C T T A C G C A T C A T C C C A T G A A C G T T C C C I T A T 2 G G 2 A G G C G A C G [C] C G G G C END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 D001 = ? ? ? ? = A ? ? ? ? ? T ? = A = = = = = = = ? ? ? ? ? ? ? ? ? ? ? ? ? = = = = ? ? = = C A T C T ? = C ? = = = = = = = = T = C A = 4 = = = A = A = G = = = = = = = = = = ? ? ? ? = G ? ? ? ? ? C ? = C = = = = = = = ? ? ? ? ? ? ? ? ? ? ? ? ? = = = = ? ? = = T G C A C ? = T ? = = = = = = = = C = T G = 3 = = = G = G = A = = = = = = = = = 0 D002 A A C ? ? = G = = = = = = = = = T G G G T = = = G ? ? ? = ? = = A = C C T = = = = = = = = = = = T = = = = = = = = = = = T = = = = = 3 = A = A C = = G = = = = = = = = = G G T ? ? = A = = = = = = = = = C A A T G = = = A ? ? ? = ? = = G = G A C = = = = = = = = = = = C = = = = = = = = = = = C = = = = = 2 = G = G G = = A = = = = = = = = = 0 D003 = (A) (C) = (C) = (G) = (G) (G) (A) (A) = (A) (G) = (C) (A) (A) (T) = = = (G) (A) ? ? ? ? ? = (A) = (D) = C = = A = T = C ? = G C = T = C T = T C = = = A = = = I = A ? (2) = G = = G = = = = = = = = = = = = = (G) (T) = (G) = (A) = (A) (A) (T) (G) = (G) (C) = (T) (G) (G) (G) = = = (C) (G) ? ? ? ? ? = (G) = (I) = A = = C = G = A ? = A T = C = A C = A A = = = T = = = D = G ? (3) = A = = C = = = = = = = = = = = = 0 D004 ? (A) (C) = (C) = = (A) (G) (G) (A) (A) (T) = = = (C) = = = (G) = = (C) = = = = = ? = (A) = = (G) (C) = (T) = = = = = = = = = = = = (A) = = (A) (A) = (G) = = = = = = T = = 3 (A) = = = = (A) = (A) (G) (T) (A) (G) = (A) = = = ? (G) (T) = (G) = = (C) (A) (A) (T) (G) (C) = = = (T) = = = (T) = = (G) = = = = = ? = (G) = = (C) (A) = (G) = = = = = = = = = = = = (C) = = (T) (C) = (T) = = = = = = C = = 4 (G) = = = = (G) = (G) (A) (C) (G) (C) = (G) = = = 0 D005 ? = = = = = = = = = = = = = = (A) C = = = G = = C = ? ? ? = T C = A I = = C = = C = C = = C A T C C C C = = = = C T T T = = C = = = = = = = 2 = = = C = = = = = = = = = = ? = = = = = = = = = = = = = = (C) T = = = T = = G = ? ? ? = C T = G D = = T = = T = T = = T G C A T T A = = = = A G C A = = T = = = = = = = 4 = = = T = = = = = = = = = = 0 D006 = (A) (C) = (C) = (G) = (G) (G) (A) (A) = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = (C) = = = G = = = = = = = T C = = G = 2 = = 2 G = = = ? = = = = = = C = = = (G) (T) = (G) = (A) = (A) (A) (T) (G) = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = (T) = = = C = = = = = = = C T = = A = 3 = = 4 A = = = ? = = = = = = G = = 0 D007 = = = = = ? = = = ? = = = A G = = ? ? ? T = = ? ? T C G = ? C = A I G C = T = = T = C ? = G C = T = A T C = A = G = = T C ? I = A ? 4 A = = = = A = A = = = = (T) = = = = = = = = = ? = = = ? = = = G C = = ? ? ? G = = ? ? G T A = ? T = G D C A = G = = G = A ? = A T = C = C C G = C = T = = C T ? D = G ? 3 G = = = = G = G = = = = (C) = = = = 0 D008 A A C ? ? ? G ? ? ? ? ? = ? C = ? ? ? ? ? ? ? ? ? ? ? ? ? ? = = A I ? ? = = = = = = = ? = = = = ? = = = = = = = = ? ? ? ? ? = = = ? = = = ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? G G T ? ? ? A ? ? ? ? ? = ? G = ? ? ? ? ? ? ? ? ? ? ? ? ? ? = = G D ? ? = = = = = = = ? = = = = ? = = = = = = = = ? ? ? ? ? = = = ? = = = ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0 D009 = A C = C = A = A A T G = ? G = T ? ? ? ? ? ? ? ? G T A = ? = = G = G A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 3 = = = A = = = G ? ? ? ? = = G = = = G T = G = G = G G A A = ? C = C ? ? ? ? ? ? ? ? T C G = ? = = A = C C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 2 = = = G = = = A ? ? ? ? = = C = = 0 D010 ? = = = = = = = = = = = = = = = C = = = = = = (C) = = = = = ? = = G D = = = G = = G = A = = = = A T = = = = = = = T T T = = = D = G = (3) G = = G = G = = = = = = = = C = = ? = = = = = = = = = = = = = = = T = = = = = = (G) = = = = = ? = = A I = = = T = = T = C = = = = C C = = = = = = = G C A = = = I = A = (2) A = = A = A = = = = = = = = G = = 0 D011 = = = = = = = = = = = = = (A) = = = = = = G = = C = T C = = ? = = = = (C) (C) T T = T = T = = T G C A T T A = = = = A G C A = = T = = = ? 3 = G 4 = G = T = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = T = = G = G T = = ? = = = = (G) (A) C G = C = C = = C A T C C C C = = = = C T T T = = C = = = ? 2 = A 2 = C = C = = = = = = = = = = 0 D012 ? ? ? = (C) = (G) = (G) (G) (A) (A) = (A) (G) = = = = = = T = G = = = A = C = A = D G A C G = C = C = = C A T C C C = = = A A C = T T = T = = = = ? 2 = A = G C = C = = ? ? ? C = G = = ? ? ? = (G) = (A) = (A) (A) (T) (G) = (G) (C) = = = = = = C = C = = = G = T = G = I C C T T = T = T = = T G C A T T = = = T C A = C A = C = = = = ? 3 = G = A G = T = = ? ? ? T = C = = 0 D013 = = = = = = = = = = = = = ? = = ? (A) (A) (T) (G) = = = (A) G T A = ? T = G D = A = G = = = = = = = = = = C = = = = = C = = C A C = = = = = = 3 G = = = = G = G = = = = = = = = = = = = = = = = = = = = = = ? = = ? (G) (G) (G) (T) = = = (G) T C G = ? C = A I = C = T = = = = = = = = = = T = = = = = A = = T T T = = = = = = 4 A = = = = A = A = = = = = = = = = 0 D014 ? = = = = = (A) (A) = = = = (T) (A) = (A) = = = = = = = = = = = G = = T = G = C = = = C = G = A T = A T = C = = = = A A = = = T = = = ? = G ? = = = = = = = = = = = = = = = = = = ? = = = = = (G) (C) = = = = (C) (G) = (C) = = = = = = = = = = = A = = C = A = G = = = A = T = C G = G C = T = = = = T C = = = A = = = ? = A ? = = = = = = = = = = = = = = = = = = 0 D015 ? = = = = = = = = = = = = ? = = C = = = G = = C = G T = = ? = = = I C C = = C = G = A T = A T = C = = = = = = = T = T = = C D = G ? 3 = = ? A = = = G = ? ? ? = = = G = ? = = = = = = = = = = = = ? = = T = = = T = = G = T C = = ? = = = D G A = = A = T = C G = G C = T = = = = = = = G = A = = T I = A ? 2 = = ? G = = = A = ? ? ? = = = A = 0 DY01 A = = A = C A A G G A = T A G A = ? = = T = ? ? ? G T A = ? T = G D = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 2 = = ? G = = = A = = = = ? ? ? ? ? G = = G = T G C A A T = C G C C = ? = = G = ? ? ? T C G = ? C = A I = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 3 = = ? A = = = G = = = = ? ? ? ? ? 0 DY02 ? = = = = = = ? ? ? ? ? = ? = = = (G) (G) (G) ? ? ? (C) (G) = = = = = = = = D C = = T = = = = = = = = = = C = A C = A A = = C T = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = ? ? ? ? ? = ? = = = (A) (A) (T) ? ? ? (G) (A) = = = = = = = = I G = = G = = = = = = = = = = T = C T = T C = = T A = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY03 ? = = = = = = = = = = = = (A) = = = = = = = = = ? = (T) (C) = = = = = = (I) = = = G = = = = = = = = = = = = C T = T C = = C A = (T) = = = = = 2 = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = (G) = = = = = = = = = ? = (G) (T) = = = = = = (D) = = = T = = = = = = = = = = = = A C = A A = = T T = (C) = = = = = 3 = = = = = = = = = = = = = = = = = 0 DY04 ? = = (A) = = (G) ? ? ? ? ? (C) ? = = = = = = = = = = = G T = = = = = = (D) = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (3) = = = = = = = = = = = = = = = = = ? = = (G) = = (A) ? ? ? ? ? (T) ? = = = = = = = = = = = T C = = = = = = (I) = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (2) = = = = = = = = = = = = = = = = = 0 DY05 ? A C = C = G = G G A A = ? G = T G G G T = = = G G T A = ? = = = = C C = = C = G = A T = A T = C = C = = T C = T T = = = = = = = ? = = = = (G) = = (C) (A) = = = = = = = = = ? G T = G = A = A A T G = ? C = C A A T G = = = A T C G = ? = = = = G A = = A = T = C G = G C = T = A = = A A = G C = = = = = = = ? = = = = (A) = = (T) (G) = = = = = = = = = 0 DY06 ? = = = = = = = = = = = = = = = = = (G) (G) ? ? = (C) (G) = = = C ? = = = D C = = = = = = = = = = = = = C = = = = = = = = = = = T C D = G = 3 G = = G = G = = A C G C T G C G C ? = = = = = = = = = = = = = = = = = (A) (T) ? ? = (G) (A) = = = T ? = = = I G = = = = = = = = = = = = = T = = = = = = = = = = = C T I = A = 4 A = = A = A = = G T A G C A G A T 0 DY07 ? = = = = = = = = = = = = = = = C A A T G = = = A = = = = ? = = = D C = = = C = G = A T = A T = C = = C = = = = T = T = = = = = = = = = = 2 G = = = A = = = = = = = = = ? = = = = = = = = = = = = = = = T G G G T = = = G = = = = ? = = = I G = = = A = T = C G = G C = T = = T = = = = G = A = = = = = = = = = = 3 A = = = G = = = = = = = = = 0 DY08 ? A C = C = G = G G A A = A G = = = = = T = = G = = = A = ? = G A I (C) (A) = = = = = = = = (C) (A) (T) (C) (C) = = = = = = = (T) = (T) = = = (D) = (G) (C) (3) = = = (G) = = = (A) = = = = = = = = = ? G T = G = A = A A T G = G C = = = = = G = = C = = = G = ? = A G D (G) (C) = = = = = = = = (T) (G) (C) (A) (T) = = = = = = = (G) = (A) = = = (I) = (A) (T) (2) = = = (A) = = = (G) = = = = = = = = = 0 DY09 = = = = = = = = = = = = = (A) (G) = = = = = (T) = = (G) = = = = = ? = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = (C) = = = = = 2 = = = G = = = A G T A G = = = = = = = = = = = = = = = = = = (G) (C) = = = = = (G) = = (C) = = = = = ? = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = (T) = = = = = 3 = = = A = = = G A C G C = = = = = 0 DY10 ? (A) (C) = (C) = (G) = (G) (G) (A) (A) = = C = C = = = G T = = = = = = = ? = = = = = = = = = = G = A T = A T = = = C C G = = = T T T = T = D = G = (3) = = = = = = = = G T A G = = = = = ? (G) (T) = (G) = (A) = (A) (A) (T) (G) = = G = T = = = T C = = = = = = = ? = = = = = = = = = = T = C G = G C = = = A T C = = = G C A = C = I = A = (2) = = = = = = = = A C G C = = = = = 0 DY11 = = = (A) = (C) (G) ? ? ? ? ? (C) = = (C) = = = = = = = ? ? = = G = ? = = = D = = = = C = G = A T T = = A = = = = C = = = T = T = = = = = = = 3 = = = G = = = A = = = = = = = = = = = = (G) = (T) (A) ? ? ? ? ? (T) = = (A) = = = = = = = ? ? = = A = ? = = = I = = = = A = T = C G C = = C = = = = G = = = G = A = = = = = = = 2 = = = A = = = G = = = = = = = = = 0 DY12 = A C G C T ? A G G A A T = = A C A A T G = = = A = = = = ? (C) = (A) = (C) (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (2) = (A) = = (C) = = = = = = = = = = = = = G T A G C ? C A A T G C = = C T G G G T = = = G = = = = ? (T) = (G) = (G) (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (3) = (G) = = (G) = = = = = = = = = = = = 0 E101 ? = = = = = = = = = = = = A G = = = = = T = = (C) = = = = = ? = = = = = = = = = = = = = = = = = = T ? = = ? = = = = = = = C = = = = = ? ? = = (G) = = (C) (A) = = = = (T) = (C) = = ? = = = = = = = = = = = = G C = = = = = G = = (G) = = = = = ? = = = = = = = = = = = = = = = = = = C ? = = ? = = = = = = = T = = = = = ? ? = = (A) = = (T) (G) = = = = (C) = (G) = = 0 E102 = = = ? ? = = = = = = = = = = = (C) = (A) (T) (G) = (C) = = (T) (C) = = (T) (C) (G) (A) (I) = C T T = T = T = = T G C A T T A = = = = A G C A = = (T) = = (A) = = = = (4) = = = T = = = = = = = = = = = = = ? ? = = = = = = = = = = = (T) = (G) (G) (T) = (T) = = (G) (T) = = (C) (T) (A) (G) (D) = A C G = C = C = = C A T C C C C = = = = C T T T = = (C) = = (G) = = = = (2) = = = C = = = = = = = = = = 0 E103 ? = = A = C G ? ? ? ? ? C ? = C = = = = = = = = = = = G = = = A = D G C = T = = ? ? C = T G C = T = A = ? = = = G C A = C = I (C) A ? 3 A = = A = A = = G T A G C A = = = ? = = G = T A ? ? ? ? ? T ? = A = = = = = = = = = = = A = = = G = I C A = G = = ? ? A = C A T = C = C = ? = = = T T T = T = D (T) G ? 2 G = = G = G = = A C G C T G = = = 0 E104 = = = = = = = = = = = = = A G = C = = = = T C G = T C = = = C = A = G = = = = = = = = = = = = = = = A = = A A = G = = = (C) (T) = = = = = = = (4) (A) = = = ? = = = = = = (G) = = = = = = = = = = = = = = = G C = T = = = = C T C = G T = = = T = G = C = = = = = = = = = = = = = = = C = = T C = T = = = (T) (C) = = = = = = = (2) (G) = = = ? = = = = = = (C) = = 0 E105 = (A) (C) = (C) = G = G G A A = = = = = = = = = = = = = G T A = = = = = = = A = = = = = = = = = = = = = = C = ? T C = T = = = = = = = = = 2 = G = G ? ? ? ? G T A G ? = = = = = (G) (T) = (G) = A = A A T G = = = = = = = = = = = = = T C G = = = = = = = C = = = = = = = = = = = = = = A = ? A A = G = = = = = = = = = 3 = A = A ? ? ? ? A C G C ? = = = = 0 E106 ? = = = = = = = = = = = ? = = = = G G G = = = ? ? = = G = ? = = = = G = C = = C T C C = = = = C = ? = = = = = C = = = = = T I C A ? 4 A = = = = A C A G ? ? ? = A = A T ? = = = = = = = = = = = ? = = = = A A T = = = ? ? = = A = ? = = = = C = T = = T G T A = = = = A = ? = = = = = A = = = = = C D T G ? 3 G = = = = G T G A ? ? ? = G = G C 0 E107 ? = = = = = ? = = = = = = = = = C A A T G = = = A ? ? ? ? ? C = A = C C T T = T = T = = T G C A T T A = = = = A G C A = ? = = = = = = = = = = = = T = = = = = = = = = = ? = = = = = ? = = = = = = = = = T G G G T = = = G ? ? ? ? ? T = G = G A C G = C = C = = C A T C C C C = = = = C T T T = ? = = = = = = = = = = = = C = = = = = = = = = = 0 E108 ? (A) (C) = = = = C A A T G C G C C T = = = = = = ? = = = = = C T = G D C A = G = = ? ? A T = A T = C = = C G A = = = = = C = C D T G C 3 G A = = C G = G A C G C = G = ? ? ? (G) (T) = = = = A G G A A T A G A C = = = = = = ? = = = = = T C = A I G C = T = = ? ? C G = G C = T = = T C T = = = = = T = T I C A T 4 A G = = G A = A G T A G = A = ? ? 0 E109 ? = = = = = = = = = = = = = = = = G G G = = = C G = = G = ? = = = = G = C = = C = C C = = = = C = C = = = = = C = = = = = T I C A = 4 A = = = = A C A G T A G = A = A T ? = = = = = = = = = = = = = = = = A A T = = = G A = = A = ? = = = = C = T = = T = T A = = = = A = T = = = = = A = = = = = C D T G = 3 G = = = = G T G A C G C = G = G C 0 E110 = ? ? = = = = = = = = = = = = = C = = = G = = ? ? T C G = ? C = A I = C = T = = T = C G = G C = T = A T C = A = G = = T = T I (C) A = 4 A = 2 = = A = A G T A G = = = = = = ? ? = = = = = = = = = = = = = T = = = T = = ? ? G T A = ? T = G D = A = G = = G = A T = A T = C = C C G = C = T = = C = C D (T) G = 3 G = 3 = = G = G A C G C = = = = = 0 E111 = A C = C = A = A A T G = G C = = G G G = = = C G = = G = ? = = = = G = C = = C T C C G C = = C = C = = ? = A C = T T T = T I = A = ? ? ? = = = A C A G T A G = = C = = = G T = G = G = G G A A = A G = = A A T = = = G A = = A = ? = = = = C = T = = T G T A T T = = A = T = = ? = C A = C A C = C D = G = ? ? ? = = = G T G A C G C = = G = = 0 E112 = = = = = = = = = = = = = = = = = = = = = = = ? ? T C G = = = = A I G C = T = = = = C = T G C = T = A = = = = = G C A = C T I C A = 4 A = = = = A = A G T A G C A G A T = = = = = = = = = = = = = = = = = = = = = = = ? ? G T A = = = = G D C A = G = = = = A = C A T = C = C = = = = = T T T = T C D T G = 3 G = = = = G = G A C G C T G C G C 0 E113 ? = = ? ? = A = ? ? ? ? C G C C = = = = = = = = = G T A = ? T = = = C A T = = T G T A T T = = A C ? = = = = C A = C A C = C D = G ? 3 G = = = = G T G = = = = = = = = = ? = = ? ? = G = ? ? ? ? T A G A = = = = = = = = = T C G = ? C = = = G C C = = C T C C G C = = C T ? = = = = A C = T T T = T I = A ? 4 A = = = = A C A = = = = = = = = = 0 E114 = = = = = = (A) = ? ? ? ? (T) = = (A) = = = = = = ? = = = = = = = = = = = = = = = = = T = C G = G C = T = A = ? = A = G = = T = T I = A = 4 A = 2 = = A = A (G) (T) (A) (G) = = = = = = = = = = = (G) = ? ? ? ? (C) = = (C) = = = = = = ? = = = = = = = = = = = = = = = = = G = A T = A T = C = C = ? = C = T = = C = C D = G = 3 G = 3 = = G = G (A) (C) (G) (C) = = = = = 0 E115 ? = = = = = = = = = = = = = = = = = = (T) = = = ? ? ? ? ? ? = = = = = (C) = T = = T = T = = T G C A T T = = = T C A = C A = = = = = = ? 3 = G = = G = T = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = (G) = = = ? ? ? ? ? ? = = = = = (G) = C = = C = C = = C A T C C C = = = A A C = T T = = = = = = ? 2 = A = = C = C = = = = = = = = = = 0 E116 ? A C = C = G = G G A A = A G = = = = = = = = ? = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = (3) = = = = = = = = = = = = = = ? G T = G = A = A A T G = G C = = = = = = = = ? = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = (2) = = = = = = = = = = = = = = 0 E117 ? = = (A) = (C) (G) ? ? ? ? ? (C) = = (C) = = = = = = = = = = = = = = C = A I = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = 3 = = 3 A = = = G = = = = C = G = = ? = = (G) = (T) (A) ? ? ? ? ? (T) = = (A) = = = = = = = = = = = = = = T = G D = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = 2 = = 2 G = = = A = = = = T = C = = 0 E118 = = = = = = = = = = = = = = = = = = = = = = ? G A = = A = ? = = = D C = T = = T = T = = T G C A T T A = = = = A G C A = = = = = = ? = = = 2 = = = T = (G) (T) (A) (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = ? C G = = G = ? = = = I G = C = = C = C = = C A T C C C C = = = = C T T T = = = = = = ? = = = 3 = = = C = (A) (C) (G) (C) = = = = = 0 E119 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = D C = = G = = G = A = C A T = C = C = ? = = = T T T = = C D T G = 3 G = 3 = = G = G A C G C = G = G C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = I G = = T = = T = C = T G C = T = A = ? = = = G C A = = T I C A = 4 A = 2 = = A = A G T A G = A = A T 0 E120 = = = (G) = (T) = = = = = = = = = = = (A) (A) (T) = = = (G) (A) = = (A) = ? = = = I = A = G = C = C = = C A T C C C C = = = = C T T T = T = = = = = 2 = = = G = = C A ? C G = T = C = = = = = (A) = (C) = = = = = = = = = = = (G) (G) (G) = = = (C) (G) = = (G) = ? = = = D = C = T = T = T = = T G C A T T A = = = = A G C A = C = = = = = 3 = = = A = = T G ? T A = C = G = = 0 E121 = = = = = = (A) ? ? ? ? ? (T) = = (A) (C) = = = (G) = = (C) = = = = = = = = = = = = = = = = G = A = C A T = C ? C = = = = = T T T = = C D = G = 2 G = = G = G = = A C G C = G ? ? ? = = = = = = (G) ? ? ? ? ? (C) = = (C) (T) = = = (T) = = (G) = = = = = = = = = = = = = = = = T = C = T G C = T ? A = = = = = G C A = = T I = A = 3 A = = A = A = = G T A G = A ? ? ? 0 E122 = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? = = = D C C T T = T = T = = T G C A T T A = = = = A G C A = C = = = = = ? ? = = A = = T G = = = = C = G = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? = = = I G A C G = C = C = = C A T C C C C = = = = C T T T = T = = = = = ? ? = = G = = C A = = = = T = C = = 0 H101 = A C = C = = A G G A A T A G A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = G T = G = = C A A T G C G C C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 H102 = (A) (C) = (C) = (G) = (G) (G) (A) (A) = (A) (G) = = G = = = = C = G = = = T ? C = A I G C = = A = T = C G = G C = T = A = = A A = G = = = = (C) (D) = (G) = = = = (2) = = = = = = = = = = = = = = = (G) (T) = (G) = (A) = (A) (A) (T) (G) = (G) (C) = = A = = = = T = A = = = C ? T = G D C A = = C = G = A T = A T = C = C = = T C = T = = = = (T) (I) = (A) = = = = (4) = = = = = = = = = = = = = = 0 H103 ? = = ? ? = A = ? ? ? ? T = = A = G G G = = = C G = = G = ? = A = D G = C = = = T = C G = G C = T = = = C T = = = = = T = T I = A ? 3 A G = = G A = A G T A G = = = = = ? = = ? ? = G = ? ? ? ? C = = C = A A T = = = G A = = A = ? = G = I C = T = = = G = A T = A T = C = = = G A = = = = = C = C D = G ? 2 G A = = C G = G A C G C = = = = = 0 H104 ? = = = = = A = ? ? ? ? T = = A = A A T = = = G A = = A = ? T = G = C = = = = T G T A T T = = A = T = C G = C A = C A C = C D = G = 3 G = = = = G T G A C G C = = = = = ? = = = = = G = ? ? ? ? C = = C = G G G = = = C G = = G = ? C = A = G = = = = C T C C G C = = C = C = T C = A C = T T T = T I = A = 4 A = = = = A C A G T A G = = = = = 0 H105 ? = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = C = A = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = 3 = = 3 A = = = G = = = = C = G = = ? = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = T = G = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = 2 = = 2 G = = = A = = = = T = C = = 0 H106 = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 H107 = (A) = = = = = = = = = = = = = = (C) = = = = = = ? ? = = = = = = = = (I) = = = = = = = = = = = = = = = ? = = = = = = = = = = ? ? = = = ? 2 = A = = C = = = = = = = ? ? ? ? ? = (G) = = = = = = = = = = = = = = (T) = = = = = = ? ? = = = = = = = = (D) = = = = = = = = = = = = = = = ? = = = = = = = = = = ? ? = = = ? 3 = G = = G = = = = = = = ? ? ? ? ? 0 H108 ? (A) (C) = (C) = = ? (G) ? (A) = (T) (A) (G) (A) = = G G = = T ? = = = G C T = = = = = = = = C = = = = = = = = = = = = = = T = = = = = T = T I = A ? 4 A = = = = A = A G T A G = = = = = ? (G) (T) = (G) = = ? (A) ? (T) = (C) (G) (C) (C) = = A T = = C ? = = = A T C = = = = = = = = A = = = = = = = = = = = = = = A = = = = = C = C D = G ? 3 G = = = = G = G A C G C = = = = = 0 H109 = ? ? ? ? = = = = = = = = = = = = G G G = = = C G = = G = ? T = G = G A C G = C = C = = C A T C C C C = = = = C T T T = = = = = = = = = = = = = = C = = ? ? ? ? ? ? ? ? = ? ? ? ? = = = = = = = = = = = = A A T = = = G A = = A = ? C = A = C C T T = T = T = = T G C A T T A = = = = A G C A = = = = = = = = = = = = = = T = = ? ? ? ? ? ? ? ? 0 H110 = = = = = = = = = = = = = = = = = = = = G = = C = T C G = ? = G = I = C = ? = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = 2 = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = T = = G = G T A = ? = A = D = A = ? = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = 3 = = = = = = = = = ? = = = = 0 H111 ? = = = = = = = = = = = = = = = = G G G = = = C G = = G = ? = A = = G = C G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = A A T = = = G A = = A = ? = G = = C = T T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 H112 = = = = = = = = = = = = = = = = (T) = = = (T) = = (G) = (G) (T) (A) = ? = = = D = A = = = = = = = = = = = = = = C = = T C = T = = = = = = = = T 3 = = = = = G = G A C G C = G = = = = = = = = = = = = = = = = = = = (C) = = = (G) = = (C) = (T) (C) (G) = ? = = = I = C = = = = = = = = = = = = = = A = = A A = G = = = = = = = = C 2 = = = = = A = A G T A G = A = = = 0 H113 ? = = = = = (A) ? ? ? ? ? (T) = = (A) C = = = = = = = = = = = = T = A A = G (C) = T = = T = C G = G C = T = A = C = A = G = = T = T I = A = 4 A = = = = A = A G T A G = = = = = ? = = = = = (G) ? ? ? ? ? (C) = = (C) T = = = = = = = = = = = = C = G G = C (A) = G = = G = A T = A T = C = C = G = C = T = = C = C D = G = 3 G = = = = G = G A C G C = = = = = 0 H114 = = = ? ? = = = = = = = = = = = C = = = G = = C = T C G = ? C = A I G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = ? ? = = = = = = = = = = = T = = = T = = G = G T A = ? T = G D C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = 0 H115 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A I C C = = = = = = = = = = = = = = = = = = = = T = = = ? = = = = = 3 = = 3 A = = = G = = = = ? = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G D G A = = = = = = = = = = = = = = = = = = = = G = = = ? = = = = = 2 = = 2 G = = = A = = = = ? = C = = 0 H116 = = = = = = = = = = = = = = = = C = = = G = = C = T C G = ? C = A I = C = = = = = = = = = = = = = = A = = A A = G = = = = = = = = C 2 = A = = C = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = T = = = T = = G = G T A = ? T = G D = A = = = = = = = = = = = = = = C = = T C = T = = = = = = = = T 3 = G = = G = = = = ? ? ? = = = = = 0 H117 ? = = = = = A ? ? ? ? ? T = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = G C = = = = = = T C = A = = T T T = = = T = = = = = = = = = = = = = = = = = = = = ? = = = = = G ? ? ? ? ? C = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = T T = = = = = = C G = C = = C A C = = = C = = = = = = = = = = = = = = = = = = = = 0 H118 ? = = = = = A ? ? ? ? ? T = = A ? ? ? ? G = = C = T C G = ? = A = = G C = T = = T = C G = G C = T = A T C = A = G = = T = T I = A = = = = (3) = = = = = = = = = = = = = = ? = = = = = G ? ? ? ? ? C = = C ? ? ? ? T = = G = G T A = ? = G = = C A = G = = G = A T = A T = C = C C G = C = T = = C = C D = G = = = = (2) = = = = = = = = = = = = = = 0 H119 = (A) (C) = (C) = (G) = (G) (G) (A) (A) = (A) (G) = T = = = = = = = = = = = = C = G G = C = = G = = G = A T = A T = C = C C G = C = T = = C = C D = G = 3 G = = = = G = G A C G C = G = = = = (G) (T) = (G) = (A) = (A) (A) (T) (G) = (G) (C) = C = = = = = = = = = = = = T = A A = G = = T = = T = C G = G C = T = A T C = A = G = = T = T I = A = 4 A = = = = A = A G T A G = A = = = 0 H120 = = = ? ? = = = = = = = = = = = = G G G = = = C G = = G = ? = = = I G A C G = C = C = = C A T C C C C = = = = C T T T = ? ? = = = = = = = = = = = C = = = = = = = = = = = = = ? ? = = = = = = = = = = = = A A T = = = G A = = A = ? = = = D C C T T = T = T = = T G C A T T A = = = = A G C A = ? ? = = = = = = = = = = = T = = = = = = = = = = 0 H121 = = = = = = A ? ? ? ? ? T = = A = = = = = = = = = = = = = T = = (A) I = = = T = = T = C G C = = C T = A = = = A = G = = T = T I = A = 2 A = = A = A = = = = = = = = = = = = = = = = = G ? ? ? ? ? C = = C = = = = = = = = = = = = = C = = (G) D = = = G = = G = A T T = = A C = C = = = C = T = = C = C D = G = 3 G = = G = G = = = = = = = = = = = 0 H122 = (A) (C) = (C) = (G) = (G) (G) (A) (A) = (A) (G) = = = = = = = = = = = = = = C = = = D = = = G = = G = A T T = = A C = C = = = C = T ? ? ? = C D = G = 3 G = = G = G = = = = = = = = = = = = (G) (T) = (G) = (A) = (A) (A) (T) (G) = (G) (C) = = = = = = = = = = = = = = T = = = I = = = T = = T = C G C = = C T = A = = = A = G ? ? ? = T I = A = 4 A = = A = A = = = = = = = = = = = 0 X101 = = = = = = A ? ? ? ? ? T = = A C = = = G = = C = T C G = ? C = = = G C = T = = T = C G = G C = T ? A = ? = A = ? = = T = ? I = A = 4 A = = = = A = A G T A G ? = = = = = = = = = = G ? ? ? ? ? C = = C T = = = T = = G = G T A = ? T = = = C A = G = = G = A T = A T = C ? C = ? = C = ? = = C = ? D = G = 3 G = = = = G = G A C G C ? = = = = 0 X102 ? = = = = = = A G = A A T = G A = = = = = C T ? ? = = G C T C = = = = = C = C = T = C G = G C = T = = = = T = = = = = T = T = = = = 3 A = = = = A = A G T A = = = = = = ? = = = = = = C A = T G C = C C = = = = = T C ? ? = = A T C T = = = = = T = A = G = A T = A T = C = = = = A = = = = = C = C = = = = 2 G = = = = G = G A C G = = = = = = 0 X103 = = = A = C = = = = = = = = = = = G G G = = = C ? = = G = ? = A = = G C = T = = T = C G = G C = T = A T C = A = G = = = ? ? I = A = 3 A = = A = A = = G T A G ? = = = = = = = G = T = = = = = = = = = = = A A T = = = G ? = = A = ? = G = = C A = G = = G = A T = A T = C = C C G = C = T = = = ? ? D = G = 2 G = = G = G = = A C G C ? = = = = 0 X104 ? = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = (T) (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 2 G = = = = G = G A C G C = G = = = ? = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = (C) (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 3 A = = = = A = A G T A G = A = = = 0 X105 = A C = C = = A G G A A T A G A C = = = = = = = = = = = = T C = A I G = = T = = T = C G = G C = T = = T C T = = = = = T = T I = A T 4 A G = = G A = A G T A G = A = = = = G T = G = = C A A T G C G C C T = = = = = = = = = = = = C T = G D C = = G = = G = A T = A T = C = = C G A = = = = = C = C D = G C 3 G A = = C G = G A C G C = G = = = 0 X106 A = = G = T = ? ? ? ? ? T = G A = = = = = C T C = = = G C T C = = = = = C = C = = = = = = = = = = = C C = T C = T = = = = = D = G = 3 = = = = = = = = = = = = = = = = = G = = A = C = ? ? ? ? ? C = C C = = = = = T C G = = = A T C T = = = = = T = A = = = = = = = = = = = A T = A A = G = = = = = I = A = 2 = = = = = = = = = = = = = = = = = 0 X107 = = = = = = A = ? ? ? ? T = = A C = = = = = = = = = = = = T C = A I G C = T = = T = C G = G C = T = = = = T = = = = = T = T I = A T 4 A G = = G A = A G T A G = A = = = = = = = = = G = ? ? ? ? C = = C T = = = = = = = = = = = = C T = G D C A = G = = G = A T = A T = C = = = = A = = = = = C = C D = G C 3 G A = = C G = G A C G C = G = = = 0 X108 ? = = A = C G ? ? ? ? ? C = = C = G G G = = = C G = = G = ? = A = = G C = T = = T = C G = G C = T = A T C = A = G = = T C T I = A = 3 A = = A = A = = G T A G C = = = = ? = = G = T A ? ? ? ? ? T = = A = A A T = = = G A = = A = ? = G = = C A = G = = G = A T = A T = C = C C G = C = T = = C T C D = G = 2 G = = G = G = = A C G C T = = = = 0 X109 A = = = = ? = A G = A A T = G A T = = = = C T C = = = G C = = = = D C A C G C = = = = = = = = = = ? = C = = = = = = = = = = D = G C ? ? A = = C = = = = = = = = = = = = G = = = = ? = C A = T G C = C C C = = = = T C G = = = A T = = = = I G C T T A = = = = = = = = = = ? = T = = = = = = = = = = I = A T ? ? G = = G = = = = = = = = = = = = 0 X110 ? A C G C T = A G G A A T ? G A C A A T = = = G ? = = A = ? C = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = C = = = = ? 3 = = 3 A = = = G = = = = C = G = = ? G T A G C = C A A T G C ? C C T G G G = = = C ? = = G = ? T = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = T = = = = ? 2 = = 2 G = = = A = = = = T = C = = 0 X111 ? = = = = = (A) ? ? ? ? ? (T) = (G) (A) C = = = G = = C = T C G = ? C = A I G C = T = = T = C G = G C = T = A = C = A = G = = T = T I = A = 4 A = = = = A = A G T A G = A = ? ? ? = = = = = (G) ? ? ? ? ? (C) = (C) (C) T = = = T = = G = G T A = ? T = G D C A = G = = G = A T = A T = C = C = G = C = T = = C = C D = G = 3 G = = = = G = G A C G C = G = ? ? 0 X112 = = = = = = = = = = = = = = = = C = = = G = = ? ? T C G = ? (C) = (A) = = = T T = T = ? ? = T G C A T T A = = = = A G C A = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = T = = ? ? G T A = ? (T) = (G) = = = C G = C = ? ? = C A T C C C C = = = = C T T T = = = = = = = = = = = = = = C = = = = = = = = = = 0 X113 = = = A = C = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = T = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 X114 ? A C = C = A ? ? ? ? ? T = = A = G G G = = = C G = = G = ? = = = = G = = T = = T = C G = G C = T = A T C = A = G = = T = T I = A = 4 A = = = = A = A G T A G = A = = = ? G T = G = G ? ? ? ? ? C = = C = A A T = = = G A = = A = ? = = = = C = = G = = G = A T = A T = C = C C G = C = T = = C = C D = G = 3 G = = = = G = G A C G C = G = = = 0 X115 ? (A) (C) = (C) = (G) = (G) (G) (A) (A) = G C = = = = = G = = = = T C G = ? = = = = C = = = = = = = = = = = = = = = A = = A A = G = = = = = = = = C 2 = A = = C = = = = = = = = = = = = ? (G) (T) = (G) = (A) = (A) (A) (T) (G) = A G = = = = = T = = = = G T A = ? = = = = G = = = = = = = = = = = = = = = C = = T C = T = = = = = = = = T 3 = G = = G = = = = = = = = = = = = 0 X116 = = = = = = = = = = = = = = = = C A A T = = ? G A = = A = ? = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = T G G G = = ? C G = = G = ? = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? 0 X117 ? G T = G = = = = A = = = G = = T = = = = C T C = = = G C = = = G D ? ? C G C = = = = = = = = = = ? = C = = = = ? = = = = ? D = G C = = A = = ? ? ? ? = = = = = = ? ? ? ? A C = C = = = = G = = = A = = C = = = = T C G = = = A T = = = A I ? ? T T A = = = = = = = = = = ? = T = = = = ? = = = = ? I = A T = = G = = ? ? ? ? = = = = = = ? ? ? 0 X118 = = = (A) = (C) = = = = = = = = = = = = = = = = = ? ? = = = = ? C = A I G C = T = = T = C G = G C = T ? = ? ? T C ? ? = = T = T I = A T 3 A G = = G A = A G T A G = = = = = = = = (G) = (T) = = = = = = = = = = = = = = = = = ? ? = = = = ? T = G D C A = G = = G = A T = A T = C ? = ? ? A A ? ? = = C = C D = G C 2 G A = = C G = G A C G C = = = = = 0 X119 = A C = C ? G ? ? ? ? ? = A G = C = = = = = = = = ? ? ? ? C T = G D C A = G = = G = A T = A T = C ? = C G A = = = = = C = C D = G C 2 G A = = C G = G A C G C = G = = = = G T = G ? A ? ? ? ? ? = G C = T = = = = = = = = ? ? ? ? T C = A I G C = T = = T = C G = G C = T ? = T C T = = = = = T = T I = A T 3 A G = = G A = A G T A G = A = = = 0 X120 = A C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 X121 = = = A = C A = ? ? ? ? T = = A = = = = = = ? = = ? ? ? ? ? T = = I C C = T = T = T = = T G C A T T A = = = = A G C A = = = = = = = = = = = = = = T = = = = = = = = = = = = = G = T G = ? ? ? ? C = = C = = = = = = ? = = ? ? ? ? ? C = = D G A = G = C = C = = C A T C C C C = = = = C T T T = = = = = = = = = = = = = = C = = = = = = = = = = 0 X122 = = = = = = A = ? ? ? ? T = = A = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = (G) = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = ? ? ? ? C = = C = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = (C) = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = 0 X123 = = = ? ? ? = = = = = = = = (G) = = A A T = = ? G ? = = A = ? = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? ? = = = ? ? ? = = = = = = = = (C) = = G G G = = ? C ? = = G = ? = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? ? 0 X124 A G T = G = ? = = A = = = ? ? = T ? = = = C T C = = = G C = = = G D C = ? ? C = = = = = = = = = = ? = C ? = = = ? = = = ? = D = G C = = A = = ? ? ? ? ? ? ? ? ? ? ? ? ? G A C = C = ? = = G = = = ? ? = C ? = = = T C G = = = A T = = = A I G = ? ? A = = = = = = = = = = ? = T ? = = = ? = = = ? = I = A T = = G = = ? ? ? ? ? ? ? ? ? ? ? ? ? END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = ? ? ? ? = 1.00 ? ? ? ? ? 1.00 ? = 1.00 = = = = = = = ? ? ? ? ? ? ? ? ? ? ? ? ? = = = = ? ? = = 1.00 1.00 1.00 1.00 1.00 ? = 1.00 ? = = = = = = = = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = 1.00 = 1.00 = = = = = = = = = 1.00 1.00 1.00 ? ? = 1.00 = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = = 1.00 ? ? ? = ? = = 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = 1.00 = = = = = = = = = = = 1.00 = = = = = 1.00 = 1.00 = 1.00 1.00 = = 1.00 = = = = = = = = = = 0.64 0.64 = 0.64 = 0.64 = 0.64 0.64 0.64 0.64 = 0.64 0.64 = 0.64 0.64 0.64 0.64 = = = 0.64 0.64 ? ? ? ? ? = 0.69 = 0.69 = 1.00 = = 1.00 = 1.00 = 1.00 ? = 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = = 1.00 = = = 1.00 = 1.00 ? 0.78 = 1.00 = = 1.00 = = = = = = = = = = = = ? 0.78 0.78 = 0.78 = = 0.78 0.78 0.78 0.78 0.78 0.78 = = = 0.78 = = = 0.78 = = 0.78 = = = = = ? = 0.80 = = 0.80 0.80 = 0.80 = = = = = = = = = = = = 0.86 = = 0.86 0.86 = 0.86 = = = = = = 0.90 = = 0.90 0.87 = = = = 0.87 = 0.87 0.87 0.87 0.87 0.87 = 0.87 = = = ? = = = = = = = = = = = = = = 0.88 0.95 = = = 0.95 = = 0.95 = ? ? ? = 0.95 0.95 = 0.95 0.95 = = 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = = 0.96 = = = = = = = 0.96 = = = 1.00 = = = = = = = = = = = 0.53 0.53 = 0.53 = 0.53 = 0.53 0.53 0.53 0.53 = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = 0.63 = = = 0.97 = = = = = = = 1.00 1.00 = = 0.99 = 1.00 = = 1.00 1.00 = = = ? = = = = = = 1.00 = = = = = = = ? = = = ? = = = 1.00 1.00 = = ? ? ? 1.00 = = ? ? 1.00 1.00 1.00 = ? 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 ? = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 ? 1.00 = 1.00 ? 1.00 1.00 = = = = 1.00 = 1.00 = = = = 0.51 = = = = 1.00 1.00 1.00 ? ? ? 1.00 ? ? ? ? ? = ? 1.00 = ? ? ? ? ? ? ? ? ? ? ? ? ? ? = = 1.00 1.00 ? ? = = = = = = = ? = = = = ? = = = = = = = = ? ? ? ? ? = = = ? = = = ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? = 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = ? 1.00 = 1.00 ? ? ? ? ? ? ? ? 1.00 1.00 1.00 = ? = = 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 1.00 = = = 1.00 = = = 1.00 ? ? ? ? = = 1.00 = = ? = = = = = = = = = = = = = = = 1.00 = = = = = = 0.90 = = = = = ? = = 0.95 1.00 = = = 1.00 = = 1.00 = 1.00 = = = = 1.00 1.00 = = = = = = = 1.00 1.00 1.00 = = = 1.00 = 1.00 = 0.56 0.99 = = 0.99 = 0.99 = = = = = = = = 0.99 = = = = = = = = = = = = = = = 0.51 = = = = = = 1.00 = = 1.00 = 1.00 1.00 = = ? = = = = 0.59 0.86 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = = 1.00 = = = ? 1.00 = 1.00 1.00 = 1.00 = 1.00 = = = = = = = = = = ? ? ? = 0.80 = 0.80 = 0.80 0.80 0.80 0.80 = 0.81 0.80 = = = = = = 1.00 = 1.00 = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = = = ? 1.00 = 1.00 = 1.00 1.00 = 1.00 = = ? ? ? 1.00 = 1.00 = = = = = = = = = = = = = = = ? = = ? 0.57 0.57 0.57 0.57 = = = 0.57 1.00 1.00 1.00 = ? 1.00 = 1.00 1.00 = 1.00 = 1.00 = = = = = = = = = = 1.00 = = = = = 1.00 = = 1.00 1.00 1.00 = = = = = = 0.93 0.93 = = = = 0.93 = 0.93 = = = = = = = = = ? = = = = = 0.68 0.68 = = = = 0.68 0.68 = 0.68 = = = = = = = = = = = 1.00 = = 1.00 = 1.00 = 1.00 = = = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = 1.00 1.00 = = = 1.00 = = = ? = 1.00 ? = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = ? = = 1.00 = = = 1.00 = = 1.00 = 1.00 1.00 = = ? = = = 1.00 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = = = 1.00 = 1.00 = = 1.00 1.00 = 1.00 ? 1.00 = = ? 1.00 = = = 1.00 = ? ? ? = = = 1.00 = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = ? = = 1.00 = ? ? ? 1.00 1.00 1.00 = ? 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = ? 1.00 = = = 1.00 = = = = ? ? ? ? ? ? = = = = = = ? ? ? ? ? = ? = = = 0.90 0.90 0.90 ? ? ? 0.90 0.90 = = = = = = = = 1.00 1.00 = = 1.00 = = = = = = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = 0.59 = = = = = = = = = ? = 0.83 0.83 = = = = = = 0.81 = = = 1.00 = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = 0.87 = = = = = 1.00 = = = = = = = = = = = = = = = = = ? = = 0.51 = = 0.75 ? ? ? ? ? 0.75 ? = = = = = = = = = = = 0.91 0.91 = = = = = = 0.87 = 0.79 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.81 = = = = = = = = = = = = = = = = = ? 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = ? 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 1.00 1.00 = ? = = = = 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 1.00 = = = = = = = ? = = = = 0.69 = = 0.69 0.69 = = = = = = = = = ? = = = = = = = = = = = = = = = = = 0.76 0.76 ? ? = 0.76 0.76 = = = 0.90 ? = = = 0.90 0.90 = = = = = = = = = = = = = 0.90 = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = = = = ? = = = 1.00 1.00 = = = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 = = = = 1.00 = 1.00 = = = = = = = = = = 1.00 1.00 = = = 1.00 = = = = = = = = = ? 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = 1.00 = = 1.00 = = = 1.00 = ? = 0.91 0.91 0.91 0.73 0.73 = = = = = = = = 0.73 0.73 0.73 0.73 0.73 = = = = = = = 0.73 = 0.73 = = = 0.73 = 0.73 0.73 0.69 = = = 0.73 = = = 0.73 = = = = = = = = = = = = = = = = = = = = = = 0.88 0.88 = = = = = 0.88 = = 0.88 = = = = = ? = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = 0.88 = = = = = 1.00 = = = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 = = = = = ? 0.79 0.79 = 0.79 = 0.82 = 0.82 0.82 0.82 0.82 = = 0.90 = 0.90 = = = 0.90 0.90 = = = = = = = ? = = = = = = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 = = = 1.00 1.00 1.00 = 0.96 = 1.00 = 1.00 = 0.66 = = = = = = = = 0.96 0.96 0.96 0.96 = = = = = = = = 0.79 = 0.79 0.79 ? ? ? ? ? 0.79 = = 0.79 = = = = = = = ? ? = = 1.00 = ? = = = 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 = = = 1.00 = 1.00 = = = = = = = 1.00 = = = 1.00 = = = 1.00 = = = = = = = = = = 0.99 0.99 0.99 0.99 0.99 ? 0.99 0.99 0.99 0.99 0.99 0.99 = = 0.99 0.97 0.97 0.97 0.97 0.97 = = = 0.97 = = = = ? 0.78 = 0.78 = 0.69 0.69 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.78 = 0.78 = = 0.78 = = = = = = = = = = = = ? = = = = = = = = = = = = 0.99 0.99 = = = = = 0.99 = = 0.60 = = = = = ? = = = = = = = = = = = = = = = = = = 0.99 ? = = ? = = = = = = = 0.99 = = = = = ? ? = = 0.88 = = 0.88 0.88 = = = = 0.88 = 0.88 = = = = = ? ? = = = = = = = = = = = 0.88 = 0.88 0.88 0.88 = 0.88 = = 0.88 0.88 = = 0.77 0.56 0.56 0.56 0.56 = 0.92 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 0.92 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = = 0.59 = = 0.59 = = = = 0.59 = = = 1.00 = = = = = = = = = = ? = = 0.92 = 0.92 0.94 ? ? ? ? ? 0.94 ? = 0.94 = = = = = = = = = = = 1.00 = = = 1.00 = 1.00 1.00 1.00 = 1.00 = = ? ? 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = ? = = = 1.00 1.00 1.00 = 1.00 = 1.00 0.77 1.00 ? 1.00 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 0.94 = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 = 1.00 = 1.00 = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = 1.00 = = = 0.80 0.80 = = = = = = = 0.80 0.80 = = = ? = = = = = = 0.80 = = = 0.90 0.90 = 0.90 = 0.90 = 0.90 0.90 0.90 0.90 = = = = = = = = = = = = = 0.95 0.95 0.95 = = = = = = = 0.91 = = = = = = = = = = = = = = 0.95 = ? 0.95 0.95 = 0.95 = = = = = = = = = 0.91 = 0.91 = 0.91 ? ? ? ? 0.91 0.91 0.91 0.91 ? = = = = ? = = = = = = = = = = = ? = = = = 1.00 1.00 1.00 = = = ? ? = = 1.00 = ? = = = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = = = = 1.00 = ? = = = = = 1.00 = = = = = 1.00 1.00 1.00 1.00 ? 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 ? ? ? = 1.00 = 1.00 1.00 ? = = = = = ? = = = = = = = = = 0.99 0.99 0.99 0.99 0.99 = = = 0.99 ? ? ? ? ? 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = ? = = = = = = = = = = = = 1.00 = = = = = = = = = = ? 0.82 0.82 = = = = 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.90 1.00 = = = = = = ? = = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = ? ? 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = ? ? ? = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 1.00 = = 1.00 = ? = = = = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 = = = = = 1.00 = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = ? ? = = = = = = = = = = = = = 1.00 = = = 1.00 = = ? ? 1.00 1.00 1.00 = ? 1.00 = 1.00 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 0.83 1.00 = 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 1.00 = = 1.00 = ? = = = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 = = ? = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = ? ? ? = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = ? ? 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? = = ? ? = 1.00 = ? ? ? ? 1.00 1.00 1.00 1.00 = = = = = = = = = 1.00 1.00 1.00 = ? 1.00 = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 ? = = = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 ? 1.00 1.00 = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = 0.56 = ? ? ? ? 0.56 = = 0.56 = = = = = = ? = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 = ? = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = 1.00 = 1.00 0.88 0.88 0.88 0.88 = = = = = ? = = = = = = = = = = = = = = = = = = 0.51 = = = ? ? ? ? ? ? = = = = = 0.87 = 0.94 = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = ? 1.00 = 1.00 = = 1.00 = 1.00 = = = = = = = = = = ? 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = ? = = = = = = = = = = 0.59 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = 0.56 = = = = = = = = = = = = = = ? = = 0.59 = 0.59 0.66 ? ? ? ? ? 0.66 = = 0.66 = = = = = = = = = = = = = = 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 = = 1.00 1.00 = = = 1.00 = = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = ? 1.00 1.00 = = 1.00 = ? = = = 1.00 1.00 = 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = = = = = = ? = = = 1.00 = = = 1.00 = 0.51 0.51 0.51 0.51 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = ? = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = = = 0.52 = 0.52 = = = = = = = = = = = 0.70 0.70 0.70 = = = 0.70 0.70 = = 0.70 = ? = = = 1.00 = 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = 1.00 = = = 1.00 = = 1.00 1.00 ? 1.00 1.00 = 1.00 = 1.00 = = = = = = = = 0.73 ? ? ? ? ? 0.73 = = 0.73 0.65 = = = 0.65 = = 0.65 = = = = = = = = = = = = = = = = 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 ? 1.00 = = = = = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 ? ? ? = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = ? ? = = 1.00 = = 1.00 1.00 = = = = 1.00 = 1.00 = = = 0.99 0.99 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.88 0.88 = 0.88 = 0.88 = 0.88 0.88 0.88 0.88 = 0.88 0.88 = = 1.00 = = = = 1.00 = 1.00 = = = 1.00 ? 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = = = 0.80 0.80 = 0.80 = = = = 0.80 = = = = = = = = = = = = = = ? = = ? ? = 1.00 = ? ? ? ? 1.00 = = 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = = 1.00 = ? = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 = 1.00 ? 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = ? = = = = = 1.00 = ? ? ? ? 1.00 = = 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = = 1.00 = ? 1.00 = 1.00 = 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = ? = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 = = 1.00 1.00 = = = 1.00 = = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.56 = = = = = = = = = = = = = = 0.55 = = = = = = ? ? = = = = = = = = 0.70 = = = = = = = = = = = = = = = ? = = = = = = = = = = ? ? = = = ? 1.00 = 1.00 = = 1.00 = = = = = = = ? ? ? ? ? ? 0.88 0.88 = 0.88 = = ? 0.88 ? 0.88 = 0.88 0.88 0.88 0.88 = = 1.00 1.00 = = 1.00 ? = = = 1.00 1.00 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 = 1.00 ? 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = ? ? ? ? = = = = = = = = = = = = 0.92 0.92 0.92 = = = 0.92 0.92 = = 0.92 = ? 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = 1.00 = = ? ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = ? = 1.00 = 1.00 = 1.00 = ? = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = 1.00 = = = = = = = = = ? = = = = ? = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 1.00 = = 1.00 = ? = 1.00 = = 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.54 = = = 0.54 = = 0.54 = 0.54 0.54 0.54 = ? = = = 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = 1.00 = = = = = = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = ? = = = = = 0.80 ? ? ? ? ? 0.80 = = 0.80 0.96 = = = = = = = = = = = = 0.96 = 0.96 0.96 = 0.96 0.85 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = ? ? = = = = = = = = = = = 1.00 = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = ? 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.50 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = 1.00 = = = ? = = = = = 1.00 = = 1.00 1.00 = = = 1.00 = = = = ? = 1.00 = = = = = = = = = = = = = = = = = = 1.00 = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = ? 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = 1.00 = = = = = = = = 1.00 1.00 = 1.00 = = 1.00 = = = = ? ? ? = = = = = ? = = = = = 0.92 ? ? ? ? ? 0.92 = = 0.92 = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = = ? = = = = = 0.97 ? ? ? ? ? 0.97 = = 0.97 ? ? ? ? 1.00 = = 1.00 = 1.00 1.00 1.00 = ? = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = = = 0.62 = = = = = = = = = = = = = = = 0.83 0.83 = 0.83 = 0.83 = 0.83 0.83 0.83 0.83 = 0.83 0.83 = 1.00 = = = = = = = = = = = = 1.00 = 1.00 1.00 = 1.00 = = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = ? ? = = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 1.00 = = 1.00 = ? = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = ? ? = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = 0.94 ? ? ? ? ? 0.94 = = 0.94 = = = = = = = = = = = = = 1.00 = = 0.56 1.00 = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = = = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 = = 1.00 = 1.00 = = = = = = = = = = = = 0.76 0.76 = 0.76 = 0.76 = 0.76 0.76 0.76 0.76 = 0.76 0.76 = = = = = = = = = = = = = = 0.99 = = = 0.99 = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = = = 1.00 = 1.00 ? ? ? = 1.00 1.00 = 1.00 = 1.00 1.00 = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = 0.92 ? ? ? ? ? 0.92 = = 0.92 1.00 = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = ? 1.00 = = = 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 ? 1.00 = ? = 1.00 = ? = = 1.00 = ? 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 ? = = = = ? = = = = = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = = = = = 1.00 1.00 ? ? = = 1.00 1.00 1.00 1.00 = = = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = 1.00 = = = = = 1.00 = 1.00 = = = = 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 = = = = = = = = = 0.91 = 0.91 = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 ? = = 1.00 = ? = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = = = ? ? 1.00 = 1.00 = 1.00 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 ? = = = = ? = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = 0.51 0.51 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = 0.93 0.93 = 0.93 = = 0.95 0.95 0.95 0.95 0.95 0.95 0.95 0.95 0.95 1.00 = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = = 1.00 = 1.00 = ? ? ? ? ? 1.00 = 1.00 1.00 = = = = = 1.00 1.00 1.00 = = = 1.00 1.00 1.00 1.00 = = = = = 1.00 = 1.00 = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = 1.00 = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = 1.00 = ? ? ? ? 1.00 = = 1.00 1.00 = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = 1.00 = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = ? = = 0.93 = 0.93 0.92 ? ? ? ? ? 0.92 = = 0.92 = 1.00 1.00 1.00 = = = 1.00 1.00 = = 1.00 = ? = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = = = 0.99 = = = = ? = 0.99 0.99 = 0.99 0.99 0.99 = 0.99 0.99 1.00 = = = = 1.00 1.00 1.00 = = = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = ? = 1.00 = = = = = = = = = = 1.00 = 1.00 1.00 ? ? 1.00 = = 1.00 = = = = = = = = = = = = ? 0.97 0.97 0.97 0.97 0.97 = 0.97 0.97 0.97 0.97 0.97 0.97 ? 0.97 0.97 1.00 1.00 1.00 1.00 = = = 1.00 ? = = 1.00 = ? 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = 1.00 = = = = ? 1.00 = = 1.00 1.00 = = = 1.00 = = = = 1.00 = 1.00 = = ? = = = = = 0.73 ? ? ? ? ? 0.73 = 0.55 0.73 1.00 = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = ? 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = ? ? = = = = = = = = = = = = = = = = 0.93 = = = 0.93 = = ? ? 0.93 0.93 0.93 = ? 0.82 = 0.82 = = = 1.00 1.00 = 1.00 = ? ? = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 0.92 0.92 = 0.92 = 0.96 ? ? ? ? ? 0.96 = = 0.96 = 0.97 0.97 0.97 = = = 0.97 0.97 = = 0.97 = ? = = = = 1.00 = = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = ? 0.76 0.76 = 0.76 = 0.83 = 0.83 0.83 0.83 0.83 = 1.00 1.00 = = = = = 1.00 = = = = 1.00 1.00 1.00 = ? = = = = 1.00 = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = 1.00 = = = = = = = = 1.00 1.00 = 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = = ? 1.00 1.00 = = 1.00 = ? = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? 1.00 1.00 = 1.00 = = = = 1.00 = = = 1.00 = = 1.00 = = = = 1.00 1.00 1.00 = = = 1.00 1.00 = = = 1.00 1.00 ? ? 1.00 1.00 1.00 = = = = = = = = = = ? = 1.00 = = = = ? = = = = ? 1.00 = 1.00 1.00 = = 1.00 = = ? ? ? ? = = = = = = ? ? ? = = = 0.69 = 0.69 = = = = = = = = = = = = = = = = = ? ? = = = = ? 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 ? = ? ? 1.00 1.00 ? ? = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 1.00 = 1.00 ? 1.00 ? ? ? ? ? = 1.00 1.00 = 1.00 = = = = = = = = ? ? ? ? 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 ? = 1.00 1.00 1.00 = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 = ? ? ? ? 1.00 = = 1.00 = = = = = = ? = = ? ? ? ? ? 1.00 = = 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = 1.00 = ? ? ? ? 1.00 = = 1.00 = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = 0.52 = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = 0.58 = = 1.00 1.00 1.00 = = ? 1.00 ? = = 1.00 = ? = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? ? 1.00 1.00 1.00 = 1.00 = ? = = 1.00 = = = ? ? = 1.00 ? = = = 1.00 1.00 1.00 = = = 1.00 1.00 = = = 1.00 1.00 1.00 = ? ? 1.00 = = = = = = = = = = ? = 1.00 ? = = = ? = = = ? = 1.00 = 1.00 1.00 = = 1.00 = = ? ? ? ? ? ? ? ? ? ? ? ? ? END PHASEPROBS