Site Genotype1 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype2 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype3 AD-pop ED-pop HD-pop XD-pop Total-pop AD-chi2 ED-chi2 HD-chi2 XD-chi2 Total-chi2 000166 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 26 19 22 23 90 0.000 0.000 0.000 0.011 0.003 000287 CC 27 18 22 24 91 CT 0 1 0 0 1 TT 0 0 0 0 0 0.000 0.014 0.000 0.000 0.003 000314 CC 23 19 22 22 86 CT 4 0 0 2 6 TT 0 0 0 0 0 0.173 0.000 0.000 0.045 0.105 000340 CC 0 0 0 0 0 CT 0 1 1 0 2 TT 27 18 21 24 90 0.000 0.014 0.012 0.000 0.011 000478 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 26 19 22 23 90 0.000 0.000 0.000 0.011 0.003 000523 -- 0 2 0 0 2 +- 12 9 10 6 37 ++ 15 9 12 18 54 2.204 0.013 1.903 0.490 2.310 000567 AA 25 21 22 23 91 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 000572 AA 0 2 3 3 8 AC 12 13 9 9 43 CC 15 6 10 12 43 2.204 1.702 0.177 0.389 0.363 000790 CC 26 21 22 23 92 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 000907 CC 27 20 20 24 91 CT 0 1 2 0 3 TT 0 0 0 0 0 0.000 0.012 0.050 0.000 0.025 000930 -- 23 21 22 24 90 +- 4 0 0 0 4 ++ 0 0 0 0 0 0.173 0.000 0.000 0.000 0.044 000945 GG 0 0 0 0 0 GT 0 0 0 2 2 TT 26 21 22 22 91 0.000 0.000 0.000 0.045 0.011 000983 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 26 21 22 23 92 0.000 0.000 0.000 0.011 0.003 000991 AA 26 21 22 23 92 AG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 001043 AA 0 2 3 3 8 AG 6 8 13 11 38 GG 18 11 6 10 45 0.490 0.093 0.917 0.000 0.000 001080 -- 0 2 3 3 8 +- 7 8 13 11 39 ++ 19 11 6 10 46 0.629 0.093 0.917 0.000 0.004 001450 CC 0 0 0 0 0 CT 5 0 0 0 5 TT 21 22 21 24 88 0.294 0.000 0.000 0.000 0.071 001698 CC 0 0 0 0 0 CG 1 0 0 0 1 GG 26 22 22 23 93 0.010 0.000 0.000 0.000 0.003 002779 CC 17 17 19 22 75 CT 4 0 1 0 5 TT 0 0 0 0 0 0.233 0.000 0.013 0.000 0.083 002791 AA 18 17 20 16 71 AG 3 0 0 6 9 GG 0 0 0 0 0 0.124 0.000 0.000 0.548 0.284 003017 AA 0 0 0 0 0 AC 1 0 0 0 1 CC 20 16 20 22 78 0.012 0.000 0.000 0.000 0.003 003155 CC 13 7 10 8 38 CT 8 10 10 10 38 TT 0 0 2 2 4 1.163 2.951 0.050 0.196 2.033 003213 GG 0 0 1 0 1 GT 0 0 4 0 4 TT 22 17 17 21 77 0.000 0.000 1.144 0.000 7.780 003561 AA 0 2 0 1 3 AG 8 9 10 4 31 GG 14 6 11 19 50 1.086 0.248 2.051 1.361 0.466 003581 AA 0 0 0 0 0 AC 0 0 0 1 1 CC 22 17 21 23 83 0.000 0.000 0.000 0.011 0.003 003588 GG 20 16 21 23 80 GT 0 1 0 0 1 TT 0 0 0 0 0 0.000 0.016 0.000 0.000 0.003 003641 AA 0 0 0 0 0 AC 0 0 0 1 1 CC 22 17 20 22 81 0.000 0.000 0.000 0.011 0.003 003684 AA 0 0 0 0 0 AC 0 0 0 1 1 CC 22 17 21 22 82 0.000 0.000 0.000 0.011 0.003 003869 CC 11 13 6 12 42 CT 5 6 13 9 33 TT 1 2 3 3 9 0.172 0.948 0.917 0.389 0.422 004004 CC 17 19 22 22 80 CG 0 1 0 0 1 GG 0 0 0 0 0 0.000 0.013 0.000 0.000 0.003 004201 -- 0 0 0 0 0 +- 4 0 0 1 5 ++ 20 22 21 21 84 0.198 0.000 0.000 0.012 0.074 004472 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 25 22 22 22 91 0.010 0.000 0.000 0.000 0.003 004693 CC 24 21 22 22 89 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 004984 AA 0 0 0 0 0 AG 0 0 0 3 3 GG 20 18 21 19 78 0.000 0.000 0.000 0.118 0.029 005047 AA 0 0 0 0 0 AG 0 0 1 0 1 GG 20 18 20 22 80 0.000 0.000 0.012 0.000 0.003 005109 CC 0 0 0 0 0 CG 0 0 0 1 1 GG 20 18 21 21 80 0.000 0.000 0.000 0.012 0.003 005395 GG 20 17 20 22 79 GT 1 0 0 0 1 TT 0 0 0 0 0 0.012 0.000 0.000 0.000 0.003 005412 AA 21 17 20 16 74 AG 0 0 0 5 5 GG 0 0 0 1 1 0.000 0.000 0.000 0.499 5.122 005442 AA 0 2 0 0 2 AC 4 9 7 3 23 CC 17 6 13 19 55 0.233 0.248 0.900 0.118 0.049 005525 CC 21 17 19 22 79 CT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.013 0.000 0.003 005641 CC 18 8 11 15 52 CT 8 12 9 5 34 TT 0 1 2 2 5 0.860 1.714 0.007 2.001 0.033 005664 AA 24 20 21 22 87 AG 2 0 0 0 2 GG 0 0 0 0 0 0.042 0.000 0.000 0.000 0.011 005772 AA 0 0 0 0 0 AT 0 0 0 1 1 TT 26 21 22 22 91 0.000 0.000 0.000 0.011 0.003 005888 -- 0 0 0 0 0 +- 5 0 0 0 5 ++ 21 21 22 24 88 0.294 0.000 0.000 0.000 0.071 006419 AA 0 0 0 0 0 AT 5 0 0 3 8 TT 21 21 22 19 83 0.294 0.000 0.000 0.118 0.192 006764 CC 27 21 22 23 93 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 006790 -- 22 22 22 22 88 +- 5 0 0 2 7 ++ 0 0 0 0 0 0.281 0.000 0.000 0.045 0.139 007206 AA 26 22 15 22 85 AC 0 0 6 1 7 CC 0 0 1 0 1 0.000 0.000 0.153 0.011 3.103 007301 AA 27 21 22 23 93 AG 0 1 0 0 1 GG 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 007683 GG 22 22 22 24 90 GT 5 0 0 0 5 TT 0 0 0 0 0 0.281 0.000 0.000 0.000 0.069 007801 CC 27 22 22 22 93 CT 0 0 0 2 2 TT 0 0 0 0 0 0.000 0.000 0.000 0.045 0.011 007833 GG 0 0 0 0 0 GT 1 0 0 0 1 TT 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 008251 CC 26 22 22 24 94 CG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 008308 CC 27 22 22 23 94 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 008572 AA 0 0 0 0 0 AC 8 0 0 0 8 CC 19 22 22 22 85 0.817 0.000 0.000 0.000 0.188 008577 AA 26 22 22 22 92 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 008620 AA 0 0 0 0 0 AC 1 0 0 0 1 CC 26 22 22 22 92 0.010 0.000 0.000 0.000 0.003 008641 AA 0 0 4 0 4 AG 1 8 10 0 19 GG 26 14 8 22 70 0.010 1.086 0.079 0.000 2.907 008735 CC 27 22 21 22 92 CG 0 0 1 0 1 GG 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 008952 -- 0 0 0 0 0 +- 0 1 0 0 1 ++ 27 21 22 22 92 0.000 0.012 0.000 0.000 0.003 009225 CC 0 0 0 0 0 CT 0 1 0 0 1 TT 27 21 21 22 91 0.000 0.012 0.000 0.000 0.003 009369 AA 27 22 20 23 92 AG 0 0 1 0 1 GG 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 009372 AA 25 22 21 23 91 AC 2 0 0 0 2 CC 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 009478 CC 0 0 0 0 0 CT 0 1 0 0 1 TT 27 21 21 23 92 0.000 0.012 0.000 0.000 0.003 009589 AA 0 0 0 0 0 AG 0 0 1 7 8 GG 27 22 20 16 85 0.000 0.000 0.012 0.741 0.188 009769 CC 0 0 0 0 0 CG 5 0 0 0 5 GG 22 22 21 23 88 0.281 0.000 0.000 0.000 0.071 010101 CC 17 22 20 21 80 CT 5 0 1 0 6 TT 0 0 0 0 0 0.362 0.000 0.012 0.000 0.112 010245 CC 16 22 21 22 81 CT 5 0 1 0 6 TT 1 0 0 0 1 0.499 0.000 0.012 0.000 4.041 010402 AA 0 0 0 0 0 AG 4 0 1 0 5 GG 18 22 21 22 83 0.220 0.000 0.012 0.000 0.075 010415 CC 22 22 22 21 87 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.012 0.003 010529 CC 14 22 21 22 79 CT 5 0 1 0 6 TT 0 0 0 0 0 0.436 0.000 0.012 0.000 0.114 010550 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 15 22 21 22 80 0.017 0.000 0.000 0.000 0.003 010671 -- 16 21 21 22 80 +- 3 1 1 0 5 ++ 0 0 0 0 0 0.140 0.012 0.012 0.000 0.078 010683 AA 15 22 22 21 80 AG 2 0 0 0 2 GG 0 0 0 0 0 0.066 0.000 0.000 0.000 0.012 011138 CC 26 21 21 24 92 CT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 011212 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 25 21 22 24 92 0.010 0.000 0.000 0.000 0.003 011308 AA 19 21 21 24 85 AC 7 0 1 0 8 CC 0 0 0 0 0 0.629 0.000 0.012 0.000 0.188 011366 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 25 21 22 23 91 0.010 0.000 0.000 0.000 0.003 011376 -- 26 21 22 23 92 +- 0 0 0 1 1 ++ 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 011382 AA 25 21 22 24 92 AC 1 0 0 0 1 CC 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 011578 CC 25 21 20 22 88 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 011842 AA 22 21 20 19 82 AC 4 0 0 3 7 CC 0 0 0 0 0 0.181 0.000 0.000 0.118 0.149 011862 CC 0 0 0 0 0 CT 0 0 1 0 1 TT 26 21 19 22 88 0.000 0.000 0.013 0.000 0.003 012285 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 25 22 22 23 92 0.010 0.000 0.000 0.000 0.003 012611 CC 24 20 22 21 87 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.012 0.003 012874 AA 1 0 0 0 1 AG 2 0 1 0 3 GG 22 21 20 22 85 5.210 0.000 0.012 0.000 13.032 012975 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 24 20 22 22 88 0.000 0.012 0.000 0.000 0.003 013198 GG 22 21 21 22 86 GT 2 0 0 0 2 TT 0 0 0 0 0 0.045 0.000 0.000 0.000 0.012 013211 -- 0 0 0 0 0 +- 1 0 0 0 1 ++ 24 21 21 22 88 0.010 0.000 0.000 0.000 0.003 Note: AD: African_Descent ED: European_Descent HD: Hispanic_Descent XD: Asian_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 000523: t 000930: G 001080: AAG 004201: act 005888: G 006790: T 008952: gact 010671: G 011376: A 013211: gtc