Site Genotype1 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype2 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype3 AD-pop ED-pop HD-pop XD-pop Total-pop AD-chi2 ED-chi2 HD-chi2 XD-chi2 Total-chi2 000167 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 22 23 93 0.010 0.000 0.000 0.000 0.003 000303 CC 20 22 22 23 87 CT 7 0 0 0 7 TT 0 0 0 0 0 0.599 0.000 0.000 0.000 0.141 000566 CC 0 0 0 0 0 CT 8 0 0 0 8 TT 19 22 22 23 86 0.817 0.000 0.000 0.000 0.186 000658 GG 24 22 22 24 92 GT 3 0 0 0 3 TT 0 0 0 0 0 0.093 0.000 0.000 0.000 0.024 000832 -- 18 16 21 16 71 +- 9 6 1 7 23 ++ 0 0 0 0 0 1.080 0.548 0.012 0.741 1.826 001257 CC 24 20 21 20 85 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 001614 AA 27 22 22 21 92 AG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.012 0.003 001832 AA 27 18 21 19 85 AG 0 2 1 1 4 GG 0 0 0 0 0 0.000 0.055 0.012 0.013 0.047 002150 -- 3 0 0 0 3 +- 15 6 3 7 31 ++ 8 14 16 13 51 1.021 0.623 0.140 0.900 0.428 002493 CC 23 13 19 20 75 CG 4 9 3 4 20 GG 0 0 0 0 0 0.173 1.455 0.118 0.198 1.315 003192 AA 0 0 0 0 0 AC 1 0 0 0 1 CC 25 20 21 24 90 0.010 0.000 0.000 0.000 0.003 003473 CC 0 0 0 0 0 CG 0 0 0 1 1 GG 26 21 22 23 92 0.000 0.000 0.000 0.011 0.003 003536 AA 1 0 0 0 1 AG 16 8 2 9 35 GG 8 13 20 15 56 3.781 1.163 0.050 1.278 3.116 004375 AA 21 22 18 20 81 AT 1 0 0 0 1 TT 0 0 0 0 0 0.012 0.000 0.000 0.000 0.003 004396 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 20 22 21 19 82 0.012 0.000 0.000 0.000 0.003 004466 CC 19 22 22 23 86 CT 4 0 0 0 4 TT 0 0 0 0 0 0.209 0.000 0.000 0.000 0.046 004467 AA 0 0 0 0 0 AG 0 3 1 3 7 GG 23 19 21 20 83 0.000 0.118 0.012 0.112 0.147 004554 -- 23 19 19 21 82 +- 0 0 0 2 2 ++ 0 0 0 0 0 0.000 0.000 0.000 0.048 0.012 004570 AA 23 21 19 22 85 AG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 004797 CC 0 0 0 0 0 CT 2 0 0 0 2 TT 18 21 22 22 83 0.055 0.000 0.000 0.000 0.012 004833 AA 19 21 22 22 84 AG 1 0 0 0 1 GG 0 0 0 0 0 0.013 0.000 0.000 0.000 0.003 004863 AA 0 0 0 0 0 AC 0 2 1 1 4 CC 20 19 21 21 81 0.000 0.053 0.012 0.012 0.049 005109 AA 18 20 22 15 75 AG 1 0 0 7 8 GG 0 0 0 0 0 0.014 0.000 0.000 0.787 0.213 005543 CC 20 17 21 22 80 CG 0 2 0 0 2 GG 0 0 0 0 0 0.000 0.059 0.000 0.000 0.012 005656 CC 0 3 1 0 4 CT 2 9 9 8 28 TT 17 7 12 13 49 0.059 0.001 0.182 1.163 0.000 005678 CC 0 0 3 0 3 CG 0 0 9 14 23 GG 20 20 10 7 57 0.000 0.000 0.177 5.250 0.126 005764 AA 18 20 22 22 82 AC 2 0 0 0 2 CC 0 0 0 0 0 0.055 0.000 0.000 0.000 0.012 006046 CC 22 22 22 24 90 CG 5 0 0 0 5 GG 0 0 0 0 0 0.281 0.000 0.000 0.000 0.069 006253 AA 0 0 0 0 0 AG 3 0 0 0 3 GG 24 22 22 24 92 0.093 0.000 0.000 0.000 0.024 006357 -- 0 0 0 0 0 +- 0 0 1 0 1 ++ 27 22 21 24 94 0.000 0.000 0.012 0.000 0.003 006470 CC 0 0 0 0 0 CT 0 0 0 1 1 TT 27 22 22 23 94 0.000 0.000 0.000 0.011 0.003 006648 AA 26 19 21 24 90 AG 1 2 1 0 4 GG 0 1 0 0 1 0.010 4.455 0.012 0.000 9.224 006996 CC 2 0 0 0 2 CT 13 6 1 7 27 TT 12 16 21 17 66 0.364 0.548 0.012 0.700 0.158 007384 AA 27 22 22 23 94 AG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 007498 AA 0 0 0 0 0 AG 5 0 1 0 6 GG 22 22 21 23 88 0.281 0.000 0.012 0.000 0.102 007944 AA 27 22 22 23 94 AT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 008107 -- 0 0 0 0 0 +- 1 0 0 0 1 ++ 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 008305 CC 23 13 19 20 75 CT 4 9 3 4 20 TT 0 0 0 0 0 0.173 1.455 0.118 0.198 1.315 009126 AA 0 4 1 0 5 AG 0 10 9 4 23 GG 27 8 12 19 66 0.000 0.079 0.182 0.209 2.248 009163 AA 27 21 22 23 93 AC 0 1 0 0 1 CC 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 009550 AA 26 20 21 24 91 AG 0 2 1 0 3 GG 0 0 0 0 0 0.000 0.050 0.012 0.000 0.025 009680 -- 5 1 3 0 9 +- 12 6 11 18 47 ++ 8 15 8 6 37 0.017 0.153 0.065 8.640 1.156 009951 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 27 21 22 24 94 0.000 0.012 0.000 0.000 0.003 010342 -- 0 0 0 0 0 +- 0 2 1 2 5 ++ 26 20 21 20 87 0.000 0.050 0.012 0.050 0.072 010433 AA 0 0 0 0 0 AT 0 2 1 2 5 TT 27 20 20 22 89 0.000 0.050 0.012 0.045 0.070 010757 CC 27 22 22 23 94 CG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 010978 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 26 21 21 22 90 0.010 0.000 0.000 0.000 0.003 010983 AA 18 16 20 16 70 AG 9 5 1 6 21 GG 0 0 0 0 0 1.080 0.383 0.012 0.548 1.548 011206 AA 16 16 20 16 68 AG 11 5 1 6 23 GG 0 0 0 0 0 1.767 0.383 0.012 0.548 1.904 011338 -- 23 20 20 23 86 +- 4 1 1 0 6 ++ 0 0 0 0 0 0.173 0.012 0.012 0.000 0.105 011454 AA 0 0 0 0 0 AT 2 0 0 0 2 TT 25 21 21 23 90 0.040 0.000 0.000 0.000 0.011 011649 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 25 21 21 23 90 0.010 0.000 0.000 0.000 0.003 011779 -- 27 20 21 23 91 +- 0 2 1 0 3 ++ 0 0 0 0 0 0.000 0.050 0.012 0.000 0.025 011790 AA 25 20 21 23 89 AG 2 0 0 0 2 GG 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 012138 GG 26 20 21 24 91 GT 0 1 0 0 1 TT 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 012480 CC 0 0 0 0 0 CT 4 0 0 0 4 TT 23 21 22 23 89 0.173 0.000 0.000 0.000 0.045 012488 CC 10 16 21 16 63 CT 17 5 1 6 29 TT 0 0 0 0 0 5.700 0.383 0.012 0.548 3.220 012525 * 012598 CC 0 0 0 0 0 CG 9 5 1 6 21 GG 18 16 21 16 71 1.080 0.383 0.012 0.548 1.527 012897 CC 26 21 22 24 93 CG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 013253 CC 0 0 0 0 0 CT 2 0 0 0 2 TT 25 22 21 24 92 0.040 0.000 0.000 0.000 0.011 013362 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 27 22 21 23 93 0.000 0.000 0.000 0.011 0.003 013387 AA 0 0 0 0 0 AT 0 1 0 0 1 TT 27 21 21 24 93 0.000 0.012 0.000 0.000 0.003 013418 AA 0 0 0 0 0 AT 16 6 1 7 30 TT 10 16 20 17 63 5.136 0.548 0.012 0.700 3.439 013424 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 24 22 21 24 91 0.042 0.000 0.000 0.000 0.011 013488 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 22 22 21 23 88 0.000 0.000 0.000 0.011 0.003 013573 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 25 21 21 24 91 0.000 0.012 0.000 0.000 0.003 013789 CC 0 0 0 0 0 CG 0 0 1 0 1 GG 26 22 20 24 92 0.000 0.000 0.012 0.000 0.003 014162 -- 13 17 21 16 67 +- 13 5 1 8 27 ++ 0 0 0 0 0 2.889 0.362 0.012 0.960 2.644 014395 AA 0 0 0 0 0 AG 17 5 1 7 30 GG 10 17 21 17 65 5.700 0.362 0.012 0.700 3.340 014397 CC 0 0 0 0 0 CT 4 0 0 0 4 TT 23 22 22 24 91 0.173 0.000 0.000 0.000 0.044 014466 AA 20 15 21 23 79 AG 7 6 1 1 15 GG 0 1 0 0 1 0.599 0.153 0.012 0.011 0.091 014657 AA 27 22 22 23 94 AT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 014716 CC 22 13 19 20 74 CT 5 9 3 4 21 TT 0 0 0 0 0 0.281 1.455 0.118 0.198 1.467 015972 CC 27 21 21 12 81 CG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.021 0.003 Note: AD: African_Descent ED: European_Descent HD: Hispanic_Descent XD: Asian_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 000832: T 002150: TTTG 004554: A 006357: T 008107: CT 009680: T 010342: ATGGAAA 011338: T 011779: AT 014162: A Tri-allelic sites: Site Genotype AD-pop ED-pop HD-pop XD-pop Total-pop 012525 AA 0 0 0 0 0 012525 AC 1 0 0 0 1 012525 AT 1 0 0 0 1 012525 CC 17 12 10 11 50 012525 CT 7 8 11 12 38 012525 TT 1 1 1 0 3