Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000167 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000303 00000 ------------ C 0.87 0.88 1.00 1.00 1.00 0.96 T 0.13 0.12 0.00 0.00 0.00 0.04 0000 --- --- --- --- 000566 00000 ------------ T 0.83 0.88 1.00 1.00 1.00 0.96 C 0.17 0.12 0.00 0.00 0.00 0.04 0000 --- --- --- --- 000658 00000 ------------ G 1.00 0.88 1.00 1.00 1.00 0.98 T 0.00 0.12 0.00 0.00 0.00 0.02 0000 --- --- --- --- 000832 00000 ------------ - 0.80 0.88 0.86 0.98 0.85 0.88 + 0.20 0.12 0.14 0.02 0.15 0.12 0000 --- --- --- --- 001257 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001614 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 001832 00000 ------------ A 1.00 1.00 0.95 0.98 0.97 0.98 G 0.00 0.00 0.05 0.02 0.03 0.02 0000 --- --- --- --- 002150 00000 ------------ - 0.50 0.29 0.15 0.08 0.17 0.22 + 0.50 0.71 0.85 0.92 0.82 0.78 0000 --- --- --- --- 002493 00000 ------------ C 0.97 0.88 0.80 0.93 0.92 0.89 G 0.03 0.12 0.20 0.07 0.08 0.11 0000 --- --- --- --- 003192 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 003473 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 003536 00000 ------------ G 0.57 0.73 0.81 0.95 0.81 0.80 A 0.43 0.27 0.19 0.05 0.19 0.20 0000 --- --- --- --- 004375 00000 ------------ A 0.95 1.00 1.00 1.00 1.00 0.99 T 0.05 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004396 00000 ------------ G 0.94 1.00 1.00 1.00 1.00 0.99 A 0.06 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004466 00000 ------------ C 0.95 0.88 1.00 1.00 1.00 0.98 T 0.05 0.12 0.00 0.00 0.00 0.02 0000 --- --- --- --- 004467 00000 ------------ G 1.00 1.00 0.93 0.98 0.93 0.96 A 0.00 0.00 0.07 0.02 0.07 0.04 0000 --- --- --- --- 004554 00000 ------------ - 1.00 1.00 1.00 1.00 0.96 0.99 + 0.00 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- 004570 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 004797 00000 ------------ T 0.91 1.00 1.00 1.00 1.00 0.99 C 0.09 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004833 00000 ------------ A 0.95 1.00 1.00 1.00 1.00 0.99 G 0.05 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004863 00000 ------------ C 1.00 1.00 0.95 0.98 0.98 0.98 A 0.00 0.00 0.05 0.02 0.02 0.02 0000 --- --- --- --- 005109 00000 ------------ A 1.00 0.94 1.00 1.00 0.84 0.95 G 0.00 0.06 0.00 0.00 0.16 0.05 0000 --- --- --- --- 005543 00000 ------------ C 1.00 1.00 0.95 1.00 1.00 0.99 G 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 005656 00000 ------------ T 0.95 0.94 0.61 0.75 0.81 0.78 C 0.05 0.06 0.39 0.25 0.19 0.22 0000 --- --- --- --- 005678 00000 ------------ G 1.00 1.00 1.00 0.66 0.67 0.83 C 0.00 0.00 0.00 0.34 0.33 0.17 0000 --- --- --- --- 005764 00000 ------------ A 0.91 1.00 1.00 1.00 1.00 0.99 C 0.09 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 006046 00000 ------------ C 0.90 0.92 1.00 1.00 1.00 0.97 G 0.10 0.08 0.00 0.00 0.00 0.03 0000 --- --- --- --- 006253 00000 ------------ G 0.90 1.00 1.00 1.00 1.00 0.98 A 0.10 0.00 0.00 0.00 0.00 0.02 0000 --- --- --- --- 006357 00000 ------------ - 0.00 0.00 0.00 0.02 0.00 0.01 + 1.00 1.00 1.00 0.98 1.00 0.99 0000 --- --- --- --- 006470 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 006648 00000 ------------ A 0.97 1.00 0.91 0.98 1.00 0.97 G 0.03 0.00 0.09 0.02 0.00 0.03 0000 --- --- --- --- 006996 00000 ------------ T 0.63 0.75 0.86 0.98 0.85 0.84 C 0.37 0.25 0.14 0.02 0.15 0.16 0000 --- --- --- --- 007384 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 007498 00000 ------------ G 0.93 0.88 1.00 0.98 1.00 0.97 A 0.07 0.12 0.00 0.02 0.00 0.03 0000 --- --- --- --- 007944 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 008107 00000 ------------ - 0.00 0.04 0.00 0.00 0.00 0.01 + 1.00 0.96 1.00 1.00 1.00 0.99 0000 --- --- --- --- 008305 00000 ------------ C 0.97 0.88 0.80 0.93 0.92 0.89 T 0.03 0.12 0.20 0.07 0.08 0.11 0000 --- --- --- --- 009126 00000 ------------ G 1.00 1.00 0.59 0.75 0.91 0.82 A 0.00 0.00 0.41 0.25 0.09 0.18 0000 --- --- --- --- 009163 00000 ------------ A 1.00 1.00 0.98 1.00 1.00 0.99 C 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 009550 00849 SYNON A 1.00 1.00 0.95 0.98 1.00 0.98 G 0.00 0.00 0.05 0.02 0.00 0.02 0279 CCA CCG PRO(P) PRO(P) 009680 00000 ------------ - 0.38 0.50 0.18 0.39 0.38 0.35 + 0.62 0.50 0.82 0.61 0.62 0.65 0000 --- --- --- --- 009951 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 010342 00000 ------------ - 0.00 0.00 0.05 0.02 0.05 0.03 + 1.00 1.00 0.95 0.98 0.95 0.97 0000 --- --- --- --- 010433 00000 ------------ T 1.00 1.00 0.95 0.98 0.96 0.97 A 0.00 0.00 0.05 0.02 0.04 0.03 0000 --- --- --- --- 010757 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 010978 01077 SYNON T 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0355 ATT ATC ILE(I) ILE(I) 010983 01082 NON-SYN A 0.80 0.88 0.88 0.98 0.86 0.88 G 0.20 0.12 0.12 0.02 0.14 0.12 0357 AAT AGT ASN(N) SER(S) 011206 00000 ------------ A 0.73 0.88 0.88 0.98 0.86 0.87 G 0.27 0.12 0.12 0.02 0.14 0.13 0000 --- --- --- --- 011338 00000 ------------ - 0.93 0.92 0.98 0.98 1.00 0.97 + 0.07 0.08 0.02 0.02 0.00 0.03 0000 --- --- --- --- 011454 00000 ------------ T 0.93 1.00 1.00 1.00 1.00 0.99 A 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 011649 00000 ------------ T 1.00 0.95 1.00 1.00 1.00 0.99 C 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 011779 00000 ------------ - 1.00 1.00 0.95 0.98 1.00 0.98 + 0.00 0.00 0.05 0.02 0.00 0.02 0000 --- --- --- --- 011790 00000 ------------ A 0.93 1.00 1.00 1.00 1.00 0.99 G 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 012138 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 T 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 012480 00000 ------------ T 0.97 0.88 1.00 1.00 1.00 0.98 C 0.03 0.12 0.00 0.00 0.00 0.02 0000 --- --- --- --- 012488 00000 ------------ C 0.60 0.79 0.88 0.98 0.86 0.84 T 0.40 0.21 0.12 0.02 0.14 0.16 0000 --- --- --- --- 012525* 012598 00000 ------------ G 0.80 0.88 0.88 0.98 0.86 0.89 C 0.20 0.12 0.12 0.02 0.14 0.11 0000 --- --- --- --- 012897 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 013253 00000 ------------ T 0.93 1.00 1.00 1.00 1.00 0.99 C 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 013362 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 013387 00000 ------------ T 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 013418 00000 ------------ T 0.61 0.79 0.86 0.98 0.85 0.84 A 0.39 0.21 0.14 0.02 0.15 0.16 0000 --- --- --- --- 013424 00000 ------------ G 0.93 1.00 1.00 1.00 1.00 0.99 A 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 013488 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 013573 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 013789 01417 NON-SYN G 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0469 GGT CGT GLY(G) ARG(R) 014162 00000 ------------ - 0.68 0.83 0.89 0.98 0.83 0.86 + 0.32 0.17 0.11 0.02 0.17 0.14 0000 --- --- --- --- 014395 00000 ------------ G 0.60 0.79 0.89 0.98 0.85 0.84 A 0.40 0.21 0.11 0.02 0.15 0.16 0000 --- --- --- --- 014397 00000 ------------ T 0.93 0.92 1.00 1.00 1.00 0.98 C 0.07 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 014466 00000 ------------ A 0.80 0.96 0.82 0.98 0.98 0.91 G 0.20 0.04 0.18 0.02 0.02 0.09 0000 --- --- --- --- 014657 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 014716 00000 ------------ C 0.97 0.83 0.80 0.93 0.92 0.89 T 0.03 0.17 0.20 0.07 0.08 0.11 0000 --- --- --- --- 015972 00000 ------------ C 1.00 1.00 1.00 1.00 0.96 0.99 G 0.00 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 000832: T 002150: TTTG 004554: A 006357: T 008107: CT 009680: T 010342: ATGGAAA 011338: T 011779: AT 014162: A The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele3 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq 012525 A 0.07 0.00 0.00 0.00 0.00 0.01 C 0.73 0.83 0.76 0.70 0.74 0.75 T 0.20 0.17 0.24 0.30 0.26 0.24