Site Genotype1 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype2 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype3 AD-pop ED-pop HD-pop XD-pop Total-pop AD-chi2 ED-chi2 HD-chi2 XD-chi2 Total-chi2 000098 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 27 21 22 24 94 0.000 0.012 0.000 0.000 0.003 000364 AA 0 0 0 0 0 AT 1 0 0 0 1 TT 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 000495 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 000584 CC 0 0 0 0 0 CT 6 0 0 0 6 TT 21 21 22 24 88 0.422 0.000 0.000 0.000 0.102 000868 AA 0 0 0 0 0 AG 0 2 0 0 2 GG 27 20 22 24 93 0.000 0.050 0.000 0.000 0.011 000972 AA 0 0 0 0 0 AT 0 0 0 2 2 TT 27 21 22 22 92 0.000 0.000 0.000 0.045 0.011 001004 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 21 22 24 93 0.010 0.000 0.000 0.000 0.003 001097 AA 21 14 22 23 80 AG 6 6 0 1 13 GG 0 1 0 0 1 0.422 0.114 0.000 0.011 0.318 001375 AA 24 9 8 4 45 AT 1 9 10 11 31 TT 0 4 4 8 16 0.010 0.414 0.079 0.004 5.830 001458 CC 0 0 0 0 0 CG 0 0 0 2 2 GG 25 22 22 21 90 0.000 0.000 0.000 0.048 0.011 001581 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 24 22 21 22 89 0.010 0.000 0.000 0.000 0.003 001660 CC 24 21 19 22 86 CT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.013 0.000 0.003 001665 GG 0 1 1 1 3 GT 7 7 4 7 25 TT 17 13 15 14 59 0.700 0.002 0.930 0.011 0.030 001849 CC 18 16 20 21 75 CT 1 0 0 0 1 TT 0 0 0 0 0 0.014 0.000 0.000 0.000 0.003 001867 GG 1 1 1 1 4 GT 4 7 3 4 18 TT 15 9 14 17 55 0.930 0.057 1.655 1.144 2.149 001878 CC 20 16 17 22 75 CT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.015 0.000 0.003 001890 CC 21 16 17 19 73 CT 0 0 2 2 4 TT 0 0 0 0 0 0.000 0.000 0.059 0.053 0.055 001926 CC 18 17 19 23 77 CG 4 0 0 0 4 GG 0 0 0 0 0 0.220 0.000 0.000 0.000 0.052 002488 CC 21 22 22 20 85 CT 4 0 0 0 4 TT 0 0 0 0 0 0.189 0.000 0.000 0.000 0.047 002612 CC 0 0 0 0 0 CG 2 0 0 0 2 GG 22 22 22 20 86 0.045 0.000 0.000 0.000 0.012 002636 AA 0 0 0 0 0 AC 1 0 0 0 1 CC 24 22 22 20 88 0.010 0.000 0.000 0.000 0.003 002813 CC 8 4 7 5 24 CT 13 10 9 9 41 TT 6 7 6 9 28 0.027 0.016 0.714 0.857 1.265 002830 -- 0 4 4 8 16 +- 1 7 9 11 28 ++ 25 9 8 3 45 0.010 1.284 0.257 0.065 7.800 003813 CC 0 5 5 6 16 CT 8 10 9 10 37 TT 14 3 8 4 29 1.086 0.281 0.609 0.002 0.453 003835 CC 26 13 12 15 66 CT 1 8 9 7 25 TT 0 0 1 0 1 0.010 1.163 0.182 0.787 0.667 003865 CC 27 21 22 24 94 CG 0 1 0 0 1 GG 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 003899 AA 18 22 18 20 78 AG 9 0 4 4 17 GG 0 0 0 0 0 1.080 0.000 0.220 0.198 0.917 003978 AA 0 0 0 0 0 AG 5 0 0 0 5 GG 22 22 22 24 90 0.281 0.000 0.000 0.000 0.069 004019 AA 26 13 12 17 68 AG 1 9 9 7 26 GG 0 0 1 0 1 0.010 1.455 0.182 0.700 0.754 004133 AA 0 0 0 0 0 AG 2 2 0 0 4 GG 25 20 22 24 91 0.040 0.050 0.000 0.000 0.044 004192 CC 26 13 12 17 68 CT 1 9 9 7 26 TT 0 0 1 0 1 0.010 1.455 0.182 0.700 0.754 004361 CC 7 0 0 0 7 CT 11 4 5 3 23 TT 8 18 17 20 63 0.605 0.220 0.362 0.112 4.667 004365 GG 7 0 0 0 7 GT 11 4 5 3 23 TT 8 18 17 20 63 0.605 0.220 0.362 0.112 4.667 004445 -- 0 0 0 0 0 +- 0 0 0 1 1 ++ 26 22 22 23 93 0.000 0.000 0.000 0.011 0.003 004846 CC 23 4 9 5 41 CT 2 12 9 9 32 TT 0 5 4 9 18 0.043 0.444 0.414 0.857 5.629 005200 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 27 22 22 22 93 0.000 0.000 0.000 0.011 0.003 005249 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 22 23 93 0.010 0.000 0.000 0.000 0.003 005289 AA 0 0 0 0 0 AG 4 4 0 0 8 GG 22 18 22 23 85 0.181 0.220 0.000 0.000 0.188 005404 CC 0 0 0 0 0 CG 1 0 0 0 1 GG 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 005605 CC 26 22 22 24 94 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 005620 AA 0 0 0 0 0 AG 7 4 0 0 11 GG 20 18 22 24 84 0.599 0.220 0.000 0.000 0.359 005793 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 005795 AA 1 0 0 0 1 AG 4 0 0 0 4 GG 22 22 22 24 90 1.688 0.000 0.000 0.000 9.224 005801 GG 26 22 22 24 94 GT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 005808 CC 22 22 22 24 90 CT 5 0 0 0 5 TT 0 0 0 0 0 0.281 0.000 0.000 0.000 0.069 006120 CC 1 5 4 9 19 CG 2 12 9 9 32 GG 24 5 9 6 44 5.713 0.182 0.414 1.361 7.247 006461 CC 1 0 0 0 1 CT 3 0 2 0 5 TT 23 22 19 24 88 3.099 0.000 0.053 0.000 6.261 006475 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 27 21 22 24 94 0.000 0.012 0.000 0.000 0.003 006571 AA 0 5 4 8 17 AG 2 8 9 10 29 GG 25 9 9 6 49 0.040 1.352 0.414 0.621 9.208 006639 CC 16 22 17 20 75 CT 9 0 5 4 18 TT 2 0 0 0 2 0.210 0.000 0.362 0.198 0.530 006658 CC 23 22 20 24 89 CT 3 0 2 0 5 TT 1 0 0 0 1 3.099 0.000 0.050 0.000 6.343 006753 AA 1 0 0 0 1 AC 3 0 2 0 5 CC 23 22 20 24 89 3.099 0.000 0.050 0.000 6.343 006761 AA 20 5 9 6 40 AG 5 12 9 9 35 GG 2 5 4 9 20 3.000 0.182 0.414 1.361 4.981 007040 CC 26 20 21 23 90 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 007294 CC 0 0 1 0 1 CT 1 9 9 7 26 TT 26 12 12 17 67 0.010 1.562 0.182 0.700 0.780 007309 AA 23 21 20 24 88 AG 3 0 2 0 5 GG 1 0 0 0 1 3.099 0.000 0.050 0.000 6.261 007330 GG 21 14 15 16 66 GT 6 6 5 6 23 TT 0 1 2 2 5 0.422 0.114 2.001 1.407 2.248 007519 CC 26 12 13 17 68 CT 1 9 8 7 25 TT 0 0 1 0 1 0.010 1.562 0.027 0.700 0.620 007744 CC 20 22 21 21 84 CT 4 0 0 0 4 TT 1 0 0 0 1 1.469 0.000 0.000 0.000 8.557 007794 CC 2 5 3 8 18 CG 5 12 9 9 35 GG 18 5 10 6 39 2.600 0.182 0.177 1.028 3.582 007902 CC 19 18 22 24 83 CT 6 4 0 0 10 TT 0 0 0 0 0 0.465 0.220 0.000 0.000 0.300 007909 AA 0 1 2 2 5 AG 5 7 5 6 23 GG 21 14 15 16 66 0.294 0.011 2.001 1.407 2.248 007926 GG 0 0 2 8 10 GT 0 3 6 9 18 TT 25 19 14 7 65 0.000 0.118 1.099 1.484 15.231 008017 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 22 23 93 0.010 0.000 0.000 0.000 0.003 008091 CC 25 22 22 23 92 CT 2 0 0 0 2 TT 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 008878 CC 20 0 5 4 29 CT 4 12 5 7 28 TT 0 10 11 12 33 0.198 3.094 4.868 2.175 12.761 009068 AA 25 22 22 23 92 AC 2 0 0 0 2 CC 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 009087 CC 27 21 21 23 92 CT 0 1 1 0 2 TT 0 0 0 0 0 0.000 0.012 0.012 0.000 0.011 009107 CC 26 22 22 23 93 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 009122 CC 0 0 2 2 4 CG 6 8 5 6 25 GG 21 14 15 15 65 0.422 1.086 2.001 1.252 0.619 009176 AA 1 0 0 0 1 AG 4 0 0 0 4 GG 20 22 22 22 86 1.469 0.000 0.000 0.000 8.779 009305 CC 24 22 22 22 90 CG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 009370 GG 24 22 22 22 90 GT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 009745 CC 0 0 0 0 0 CG 0 1 0 0 1 GG 27 21 22 23 93 0.000 0.012 0.000 0.000 0.003 010096 AA 4 10 13 16 43 AG 14 12 6 5 37 GG 9 0 3 2 14 0.147 3.094 2.148 2.200 1.588 010239 AA 0 0 3 2 5 AG 8 8 4 6 26 GG 19 14 15 16 64 0.817 1.086 5.119 1.407 1.128 010388 CC 0 0 0 0 0 CT 3 0 0 0 3 TT 24 21 22 23 90 0.093 0.000 0.000 0.000 0.025 010438 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 27 21 22 22 92 0.000 0.000 0.000 0.011 0.003 010487 AA 0 0 0 0 0 AG 9 0 1 0 10 GG 18 21 21 23 83 1.080 0.000 0.012 0.000 0.300 Note: AD: African_Descent ED: European_Descent HD: Hispanic_Descent XD: Asian_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 002830: gtggctcacgcc 004445: ctt