Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000098 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 000364 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000495 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000584 00000 ------------ T 0.87 0.92 1.00 1.00 1.00 0.97 C 0.13 0.08 0.00 0.00 0.00 0.03 0000 --- --- --- --- 000868 00000 ------------ G 1.00 1.00 0.95 1.00 1.00 0.99 A 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 000972 00000 ------------ T 1.00 1.00 1.00 1.00 0.96 0.99 A 0.00 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- 001004 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001097 00000 ------------ A 0.90 0.88 0.81 1.00 0.98 0.92 G 0.10 0.12 0.19 0.00 0.02 0.08 0000 --- --- --- --- 001375 00000 ------------ A 0.96 1.00 0.61 0.59 0.41 0.66 T 0.04 0.00 0.39 0.41 0.59 0.34 0000 --- --- --- --- 001458 00000 ------------ G 1.00 1.00 1.00 1.00 0.96 0.99 C 0.00 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- 001581 00000 ------------ G 1.00 0.95 1.00 1.00 1.00 0.99 A 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001660 00000 ------------ C 1.00 1.00 1.00 0.97 1.00 0.99 T 0.00 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- 001665 00000 ------------ T 0.85 0.86 0.79 0.85 0.80 0.82 G 0.15 0.14 0.21 0.15 0.20 0.18 0000 --- --- --- --- 001849 00000 ------------ C 1.00 0.94 1.00 1.00 1.00 0.99 T 0.00 0.06 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001867 00000 ------------ T 0.82 0.89 0.74 0.86 0.86 0.83 G 0.18 0.11 0.26 0.14 0.14 0.17 0000 --- --- --- --- 001878 00000 ------------ C 1.00 1.00 1.00 0.97 1.00 0.99 T 0.00 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- 001890 00000 ------------ C 1.00 1.00 1.00 0.95 0.95 0.97 T 0.00 0.00 0.00 0.05 0.05 0.03 0000 --- --- --- --- 001926 00000 ------------ C 0.96 0.85 1.00 1.00 1.00 0.98 G 0.04 0.15 0.00 0.00 0.00 0.02 0000 --- --- --- --- 002488 00000 ------------ C 0.89 0.95 1.00 1.00 1.00 0.98 T 0.11 0.05 0.00 0.00 0.00 0.02 0000 --- --- --- --- 002612 00000 ------------ G 0.96 0.95 1.00 1.00 1.00 0.99 C 0.04 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 002636 00000 ------------ C 0.96 1.00 1.00 1.00 1.00 0.99 A 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 002813 00000 ------------ T 0.47 0.46 0.57 0.48 0.59 0.52 C 0.53 0.54 0.43 0.52 0.41 0.48 0000 --- --- --- --- 002830 00000 ------------ - 0.04 0.00 0.38 0.40 0.61 0.34 + 0.96 1.00 0.62 0.60 0.39 0.66 0000 --- --- --- --- 003813 00000 ------------ T 0.85 0.78 0.44 0.57 0.45 0.58 C 0.15 0.22 0.56 0.43 0.55 0.42 0000 --- --- --- --- 003835 00000 ------------ C 0.97 1.00 0.81 0.75 0.84 0.85 T 0.03 0.00 0.19 0.25 0.16 0.15 0000 --- --- --- --- 003865 00000 ------------ C 1.00 1.00 0.98 1.00 1.00 0.99 G 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 003899 00000 ------------ A 0.87 0.79 1.00 0.91 0.92 0.91 G 0.13 0.21 0.00 0.09 0.08 0.09 0000 --- --- --- --- 003978 00000 ------------ G 0.90 0.92 1.00 1.00 1.00 0.97 A 0.10 0.08 0.00 0.00 0.00 0.03 0000 --- --- --- --- 004019 00000 ------------ A 0.97 1.00 0.80 0.75 0.85 0.85 G 0.03 0.00 0.20 0.25 0.15 0.15 0000 --- --- --- --- 004133 00000 ------------ G 0.97 0.96 0.95 1.00 1.00 0.98 A 0.03 0.04 0.05 0.00 0.00 0.02 0000 --- --- --- --- 004192 00000 ------------ C 0.97 1.00 0.80 0.75 0.85 0.85 T 0.03 0.00 0.20 0.25 0.15 0.15 0000 --- --- --- --- 004361 00000 ------------ T 0.67 0.32 0.91 0.89 0.93 0.80 C 0.33 0.68 0.09 0.11 0.07 0.20 0000 --- --- --- --- 004365 00000 ------------ T 0.67 0.32 0.91 0.89 0.93 0.80 G 0.33 0.68 0.09 0.11 0.07 0.20 0000 --- --- --- --- 004445 00000 ------------ - 0.00 0.00 0.00 0.00 0.02 0.01 + 1.00 1.00 1.00 1.00 0.98 0.99 0000 --- --- --- --- 004846 00000 ------------ C 0.92 1.00 0.48 0.61 0.41 0.63 T 0.08 0.00 0.52 0.39 0.59 0.37 0000 --- --- --- --- 005200 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 005249 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 005289 00000 ------------ G 0.93 0.92 0.91 1.00 1.00 0.96 A 0.07 0.08 0.09 0.00 0.00 0.04 0000 --- --- --- --- 005404 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 005605 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 005620 00000 ------------ G 0.90 0.83 0.91 1.00 1.00 0.94 A 0.10 0.17 0.09 0.00 0.00 0.06 0000 --- --- --- --- 005793 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 005795 00000 ------------ G 0.83 0.96 1.00 1.00 1.00 0.97 A 0.17 0.04 0.00 0.00 0.00 0.03 0000 --- --- --- --- 005801 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 005808 00000 ------------ C 0.90 0.92 1.00 1.00 1.00 0.97 T 0.10 0.08 0.00 0.00 0.00 0.03 0000 --- --- --- --- 006120 00000 ------------ G 0.87 1.00 0.50 0.61 0.44 0.63 C 0.13 0.00 0.50 0.39 0.56 0.37 0000 --- --- --- --- 006461 00000 ------------ T 0.93 0.88 1.00 0.95 1.00 0.96 C 0.07 0.12 0.00 0.05 0.00 0.04 0000 --- --- --- --- 006475 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 006571 00000 ------------ G 0.93 1.00 0.59 0.61 0.46 0.67 A 0.07 0.00 0.41 0.39 0.54 0.33 0000 --- --- --- --- 006639 00000 ------------ C 0.87 0.62 1.00 0.89 0.92 0.88 T 0.13 0.38 0.00 0.11 0.08 0.12 0000 --- --- --- --- 006658 00000 ------------ C 0.93 0.88 1.00 0.95 1.00 0.96 T 0.07 0.12 0.00 0.05 0.00 0.04 0000 --- --- --- --- 006753 00000 ------------ C 0.93 0.88 1.00 0.95 1.00 0.96 A 0.07 0.12 0.00 0.05 0.00 0.04 0000 --- --- --- --- 006761 00000 ------------ A 0.77 0.92 0.50 0.61 0.44 0.61 G 0.23 0.08 0.50 0.39 0.56 0.39 0000 --- --- --- --- 007040 00511 SYNON C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0133 TGC TGT CYS(C) CYS(C) 007294 00000 ------------ T 0.97 1.00 0.79 0.75 0.85 0.85 C 0.03 0.00 0.21 0.25 0.15 0.15 0000 --- --- --- --- 007309 00000 ------------ A 0.93 0.88 1.00 0.95 1.00 0.96 G 0.07 0.12 0.00 0.05 0.00 0.04 0000 --- --- --- --- 007330 00000 ------------ G 0.87 0.92 0.81 0.80 0.79 0.82 T 0.13 0.08 0.19 0.20 0.21 0.18 0000 --- --- --- --- 007519 00000 ------------ C 0.97 1.00 0.79 0.77 0.85 0.86 T 0.03 0.00 0.21 0.23 0.15 0.14 0000 --- --- --- --- 007744 00000 ------------ C 0.82 0.95 1.00 1.00 1.00 0.97 T 0.18 0.05 0.00 0.00 0.00 0.03 0000 --- --- --- --- 007794 00000 ------------ G 0.71 0.95 0.50 0.66 0.46 0.61 C 0.29 0.05 0.50 0.34 0.54 0.39 0000 --- --- --- --- 007902 00000 ------------ C 0.89 0.86 0.91 1.00 1.00 0.95 T 0.11 0.14 0.09 0.00 0.00 0.05 0000 --- --- --- --- 007909 00000 ------------ G 0.89 0.92 0.80 0.80 0.79 0.82 A 0.11 0.08 0.20 0.20 0.21 0.18 0000 --- --- --- --- 007926 00000 ------------ T 1.00 1.00 0.93 0.77 0.48 0.80 G 0.00 0.00 0.07 0.23 0.52 0.20 0000 --- --- --- --- 008017 00691 SYNON G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0193 ACG ACA THR(T) THR(T) 008091 00000 ------------ C 1.00 0.92 1.00 1.00 1.00 0.99 T 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 008878 00000 ------------ T 0.15 0.00 0.73 0.64 0.67 0.52 C 0.85 1.00 0.27 0.36 0.33 0.48 0000 --- --- --- --- 009068 00000 ------------ A 1.00 0.92 1.00 1.00 1.00 0.99 C 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 009087 00000 ------------ C 1.00 1.00 0.98 0.98 1.00 0.99 T 0.00 0.00 0.02 0.02 0.00 0.01 0000 --- --- --- --- 009107 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 009122 00000 ------------ G 0.87 0.92 0.82 0.80 0.78 0.82 C 0.13 0.08 0.18 0.20 0.22 0.18 0000 --- --- --- --- 009176 00000 ------------ G 0.82 0.95 1.00 1.00 1.00 0.97 A 0.18 0.05 0.00 0.00 0.00 0.03 0000 --- --- --- --- 009305 00000 ------------ C 1.00 0.95 1.00 1.00 1.00 0.99 G 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 009370 00000 ------------ G 1.00 0.95 1.00 1.00 1.00 0.99 T 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 009745 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 C 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 010096 00000 ------------ A 0.37 0.46 0.73 0.73 0.80 0.65 G 0.63 0.54 0.27 0.27 0.20 0.35 0000 --- --- --- --- 010239 00000 ------------ G 0.83 0.88 0.82 0.77 0.79 0.81 A 0.17 0.12 0.18 0.23 0.21 0.19 0000 --- --- --- --- 010388 00000 ------------ T 0.93 0.96 1.00 1.00 1.00 0.98 C 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 010438 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 010487 00000 ------------ G 0.90 0.75 1.00 0.98 1.00 0.95 A 0.10 0.25 0.00 0.02 0.00 0.05 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 002830: GTGGCTCACGCC 004445: CTT