LOCUS LTB 4569 bp DNA PRI 09-JAN-2003 DEFINITION Homo sapiens lymphotoxin beta (TNF superfamily, member 3) (LTB) gene, complete cds. ACCESSION LTB VERSION KEYWORDS . SOURCE Homo sapiens. ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4569) AUTHORS Rieder,M.J., Livingston,R.J., Daniels,M.R., Montoya,M.A., Chung,M.-W., Miyamoto,K.E., Nguyen,C.P., Nguyen,D.A., Poel,C.L., Robertson,P.D., Schackwitz,W.S., Sherwood,J.K., Witrak,L.A. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (09-JAN-2003) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..4569 /organism="Homo sapiens" /db_xref="taxon:9606" repeat_region 16..111 /rpt_family="MIR" /rpt_type=dispersed repeat_region 141..433 /rpt_family="Alu" /rpt_type=dispersed variation 174 /replace="T" /frequency="0.01" variation 177 /replace="T" /frequency="0.02" variation 283 /replace="T" /frequency="0.01" variation 399 /replace="C" /frequency="0.07" misc_feature 434..675 /note="Region not scanned for variation" repeat_region 595..905 /rpt_family="Alu" /rpt_type=dispersed variation 809 /replace="C" /frequency="0.01" variation 870 /replace="C" /frequency="0.12" variation 1397 /replace="T" /frequency="0.01" repeat_region 1398..1526 /rpt_family="MIR" /rpt_type=dispersed variation 1682 /replace="C" /frequency="0.01" mRNA join(1734..1903,2300..2345,2529..2600,2996..3601) /gene="LTB" gene 1734..3601 /gene="LTB" CDS join(1742..1903,2300..2345,2529..2600,2996..3450) /gene="LTB" /codon_start=1 /product="lymphotoxin beta (TNF superfamily, member 3)" /translation="MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVL ALVPQDQGGLVTETADPGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGL GWETTKEQAFLTSGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLR SSLYRAGGAYGPGTPELLLEGAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGER VYVNISHPDMVDFARGKTFFGAVMVG" variation 1938 /gene="LTB" /replace="A" /frequency="0.01" variation 1942 /gene="LTB" /replace="C" /frequency="0.01" variation 2159 /gene="LTB" /replace="C" /frequency="0.01" variation 2183 /gene="LTB" /replace="A" /frequency="0.01" variation 2246 /gene="LTB" /replace="T" /frequency="0.01" variation 2259 /gene="LTB" /replace="A" /frequency="0.01" variation 2270 /gene="LTB" /replace="G" /frequency="0.01" variation 2380 /gene="LTB" /replace="C" /frequency="0.07" variation 2482..2498 /gene="LTB" /replace="-" /frequency="0.01" variation 2572 /gene="LTB" /replace="G" /frequency="0.01" variation 2579 /gene="LTB" /replace="T" /frequency="0.01" variation 2651 /gene="LTB" /replace="T" /frequency="0.01" variation 3408 /gene="LTB" /replace="T" /frequency="0.01" variation 3485 /gene="LTB" /replace="C" /frequency="0.01" variation 4247 /replace="A" /frequency="0.02" variation 4289 /replace="-" /frequency="0.01" variation 4325 /replace="A" /frequency="0.04" variation 4422 /replace="A" /frequency="0.11" variation 4462 /replace="T" /frequency="0.03" variation 4476 /replace="T" /frequency="0.02" variation 4516 /replace="A" /frequency="0.01" BASE COUNT 918 a 1283 c 1253 g 1115 t ORIGIN 1 ctgtcttgtt atcaaggctc tggagccaga tgcctgggtt caaattctgg ttctgccact 61 gactctgtga gctccataag tttcttaacc tctctgtacc tcagtttcct cttagggttt 121 ttgtcaggat tataattatt ggctgggcat gatggctcat gcttgtaatc ccagcacttt 181 aggaggccaa cacgggcaga tcacgtgagt ccaggagttt gagcccagcc tgggcaatgt 241 ggcaaaaatc catctctaca aaaaatgcaa aaattagctg ggcatggtgg catgtgccta 301 tagtcccagc tattcaggag gctgaggtag gtgaatccat agatcctggg aggtcaaggc 361 tgcagtgagc catgatcctg ccattgcatt ccagtctggg tgacatagcg agaccctgtc 421 tcaaaaaaaa aaattattaa agtgtgtaaa tcagtggcat aaacatgtta agtgcatttt 481 gtgggtcagc tatattatta ttagtattac ggaaacacat agagatgtta ccaagaaggg 541 gagatgattg gagccacttc cagcttcctt ggacctggtc tttcttccct tgactctttt 601 tttttttttt tttttttttt tttgagagag agtctcagcc tgttgcccag gctggagtgc 661 aatggtgcaa tcttggctca ctgcaacctc tgcctcccag gtttaagtga ttctcctgcc 721 tcagcctcct gtgtagctgg aattacaggc gcgtgccacc acgcccggct aactttttgt 781 atctttagta gagacagggt ttcaccatgt tggccaggct ggtctcgaac tcctgacctc 841 aagtgatcca cctgcctcag cctcccaaag tgttgggatt acaggtgtaa gccactaccc 901 cggctactcc cttgactctt aaccactcat gctgcctaca tctaccattc atgtggtcct 961 tgctgctttg ttttggttat tcctgcattt atttgtcctt ttattcattt atgtataaac 1021 atttagtaag cacctactaa tggatagggc tcattgtaga cttggaagct ctctgagggt 1081 gggagtatgc ctcgtccatc tgtctttact ttttgtagca agggaggtaa agctccattt 1141 ccatccctcc ttagtgagtc agtagtcagt ggtgaggcta aggcttacct ctccctttct 1201 cactcagcac agggggctgg agatgagcaa gggaacggga ggaggtcagc ccagtatggg 1261 aatcagttct tctcagggaa cccagacatc catccctcaa gattccagtc cttgtcctag 1321 tccggccctt gacctcagag acgggatcag ctcttcctcc agcacctacc ttgagggtat 1381 agaagaatgc aaaccacatt ggaaacctgg agatctgtgt tctcatttca gctctgctga 1441 ctggcttcct gcaagctacc ttccctccct gggcctcagt ttctctctct gctgagccag 1501 aagatgtcta aagacccctt tggttccacc ctgagagcct gtctccctaa cctcaacttc 1561 ttccccagtt cagagaaccc aggcatccag ctgccccacc ccagctctgg gtaaacagga 1621 agctgggtga ggggagcagg ggtgtgcgga aagtcccagc caggtgtgca ggtctacagg 1681 gagggggtgg gcccgtccct gaggtatgaa agccccctgc tctggctctg gttcagtctc 1741 aatgggggca ctggggctgg agggcagggg tgggaggctc caggggaggg gttccctcct 1801 gctagctgtg gcaggagcca cttctctggt gaccttgttg ctggcggtgc ctatcactgt 1861 cctggctgtg ctggccttag tgccccagga tcagggagga ctggtgagtg gctgcaacag 1921 gccctggtgg agagttgtat cttgcggatg cttggctccc tctggttgtg cctgtggtct 1981 tttgccccct ctggctcagc tggctcggct gtccctggtg gggatgtctt gtctctttgc 2041 tgactctctt tccatgttcc tgtgatgttg tgcttgtgtc ccgacataag ccccttgtgt 2101 ctcctctcct cttcccgagg tacatctgtt tctccgccca agtacctatg ccttgcttgt 2161 tctcccttct aaggaggtgt gtgttgggga tggtgctggt aggagaaacc ccaggcctgc 2221 agcttgggtc cactttcaga ggggtagggg tgacatgagc tgaatctgaa ctctgggcac 2281 tgtgacccca cccaaccagg taacggagac ggccgacccc ggggcacagg cccagcaagg 2341 actgggtaag agcagactgt ctctccttcc ccgcttcaga ccctcagggg ctcccagctc 2401 cctgctgcgt ccccagatac ctcttcctct aggaatccag gctccccatc cctgcgccct 2461 gttctctcaa gggtagcctg catgggtggc tgccctgccc ccaatcgtgg actctttgcc 2521 ccttccaggg tttcagaagc tgccagagga ggagccagaa acagatctca gccccgggct 2581 cccagctgcc cacctcatag gtaaggacct ccaagacctg aataagagtg taaataatcc 2641 gaaggttcca gttctgctcg cccagagtcc ttcggctcca tgattccagt gctcggtttc 2701 ccacccgctt cacgaccttt tgtcgctcgt gcccactctt acgctcgtcc ccgcagtgta 2761 gtttcttctt ccctccggtg caagcaaaag ccggcctgga ggtccccact acagcgttct 2821 gcaccccaca tccgtgttcc ctcggccccc aactcgcact catcccagaa acagcaccat 2881 ccctcctccc ccggcccggc tcggctcccg caggggctaa aagccgccac ttccccagaa 2941 gtcccaagcc tttaggatcg cattcccaag agcgcgtcgg cccgtgtctc cgcaggcgct 3001 ccgctgaagg ggcaggggct aggctgggag acgacgaagg aacaggcgtt tctgacgagc 3061 gggacgcagt tctcggacgc cgaggggctg gcgctcccgc aggacggcct ctattacctc 3121 tactgtctcg tcggctaccg gggccgggcg ccccctggcg gcggggaccc ccagggccgc 3181 tcggtcacgc tgcgcagctc tctgtaccgg gcggggggcg cctacgggcc gggcactccc 3241 gagctgctgc tcgagggcgc cgagacggtg actccagtgc tggacccggc caggagacaa 3301 gggtacgggc ctctctggta cacgagcgtg gggttcggcg gcctggtgca gctccggagg 3361 ggcgagaggg tgtacgtcaa catcagtcac cccgatatgg tggacttcgc gagagggaag 3421 accttctttg gggccgtgat ggtggggtga gggaatatga gtgcgtggtg cgagtgcgtg 3481 aatattgggg gcccggacgc ccaggacccc atggcagtgg gaaaaatgta ggagactgtt 3541 tggaaattga ttttgaacct gatgaaaata aagaatggaa agcttcagtg ctgccgataa 3601 agatgctgag ttgcgacaca cgtcttaatt cagggtgggt gcacgggtgc gggttaaata 3661 ttctcagtac tcttctggtt gcttgaaaca attcatcaca acacagtgta tggcctttgc 3721 tcctagggat gatggtctgc ctgtcccacc ccctccctgc ctctgaatgg ccaggcccca 3781 ccattagccc agttggaggg tgggaggaag ggggacttct caaactccga agcttctcta 3841 ggcatcctga ttttcagggc cacatggtcc caaccagact ctgcaccata ctcttttctc 3901 ttgggtaccc cccaacagtg agaggggtca ttacagagcc cagcaagcac cactcagaaa 3961 ggcccagcag cagagtaagc ccctatcatg acagaggaat gaagcctgga ggggccccgc 4021 acttctcccc ctagagctgc ctgaaggcct ctctgtctcc tacccgacag tcaactcttc 4081 tcctccaagg agcttaattc aaggctcatg gggtctgaag ggaggaggct gaaggagaaa 4141 gaaggggaga atattagaga gagatgggga tggcaggaag gagcctgtgg tgcctgaaaa 4201 caccaggaag ttctggggag gaggaaaaac cgatgcccca cttagggtgt cccatttagg 4261 gtgagacgga aaatcctcac ctttttttca cactttaggt cccccttccc aaaagtgagt 4321 aagtgtgggt gcttctggga tgagtaacag tgtcccccat tacttcatgg ctgactttca 4381 gccacaggct ggaggaggca gagggtgacc caaggcccta tctaggtcac cccaatgggt 4441 caccctaccc cctcagccta ccacatggtt ttctcctgcc tggcacccca gggctggagg 4501 taaagcctaa tttccgaact cagtggggag ctcccagtct aggggggctc aatttccgtc 4561 tccatattt //