LCMT2 Color FASTA

The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.

*Display courtesy of GeneSNPs

TAAACTGAGA TTTAAACAAT GGCCCCTCCT CCCCCGGCCT AAATCATAAG 50 GCATCGAAAT CAGAAATTTT ACTCCATTCT CTTTCTTCTT TAATTACTTT 100 TCTTGATCTG GTCTTTGCAA AACAAGTAGT ATTTTTGACA TAACACCTAC 150 ATTTTAGGAA CCTGTCATTA AATAAATTTG TTTCTATGGT GCTACGTATT 200 TTTCAAAGTC CTTCAACTTT TTTTTTTTTT CTATTTGCCC CTCAATCAAC 250 CCTGAGATAC CTCACGAAGC AGTACTTAAT CTCATTTTAG AGGTGAGGAT 300 CCACTGACCC AGCAGGCATA GGTGAGCCCT TCTTCTAATC CCTTCAGAAG 350 CAATTCTCAA ACTGCTCAAA TGTTCCATCA GATCTGAATG CCTTACACTA 400 | var(372):[A:0.01] | REPEAT AACTGACAAC TCTGTCACCA ACTTTACAGA GAAAACAGAA GCCATCAGGT 450 GCAAATTCCT TCTTTTTCTC TCTGCCCTAC CTCACACCTG AGCTTATGAT 500 | var(479):[C:0.01] TATCCATAAT CTTTTTTTTA CCCCATCAGG AGTCACAGAT AAAGGATTCA 550 | var(522):[A:0.01] TTCTCCTATC CCCACAACTA ATACGTGCCC AGGATCCCAT TTCTATCTAT 600 TCCAAGTTAC TCTACCAGTG AGTTGTCTTC TCATTTTTCT GTTCCTTCAA 650 | var(625):[A:0.41] CCTCTCCCTC TCCACTAGCT GGTTTCCCTC ACAGGACCAA CACGCATGTG 700 | var(693):[T:0.01] CAGTATTTGC TTCCACCTGA AAACAAAACA AAAGACTCTT TTATCCCACA 750 | var(750):[G:0.01] ATATTCTTTA GCCACTGCCC TGACCCTTTT TTCCTTCTGA GTTAAGCTCC 800 TCGAAAGTAT AATAATTTAG ACTGGATACC TCCTTTAACT CACCTCCTAT 850 TCACTGAAAC ATGGATTCTG CCCTTATTGC TCCACAGAAA CTGCTCTCCC 900 TAAGGCCATT AATGAGCTTT TAAACACCAA ATCTAAATGT CACTTTTCAA 950 TTACCGAATC TTTATCCTGA TCCAAACCTT TTCTTTCTTA TTTCATTTTG 1000 TTCCACAAGA AAACATTGGA AAATACGAAA CTTTTTCTTG ACTCCAGTAT 1050 | var(1002):[C:0.01] CCAAATCTGC TGGACTCCAA AACTCACACT CTTAACCATT ATGCAGTACC 1100 ACCTGTAGTT AACCATAAAG TTATCTGATT TCCTTTTCTA TTTCAGCCAG 1150 | var(1121):[C:0.01] | var(1134):[:0.01] TCAGTCACCA AATCCCAGTG AACAAATGAT AAATTTCCTA AATGTCTCTG 1200 GAAGTGGTTT CCTATGGATG ACTCCCAGAC ACCCAATTTA GAAACTTTAT 1250 GATTATTCTG AAGTCTAACC TGGATTTACT CCTTAAAAAC AAAGCTCAGA 1300 ACATATCACA GGGAACAATC ACCTCTCTTC AGTGACTCCC CTTTCTGGGG 1350 ACATATTCAA CACTACTTTA AAATCCACAG AATTCTCCAA GGCGGTGTGA 1400 | var(1385):[A:0.01] | var(1399):[A:0.01] TGAGAAAGAG AGGCTGAGTG GTTTATTCAC CGTCAGTCTA ACATAGGGCT 1450 | var(1417):[C:0.01] GGGAATACAA GGGAATCAAC AGTCTACTAT CTGTGGGGAA ACGTCTTCTT 1500 GTTAGGTGTC TATAAATTAT TTGTAAAGGT CGGTTTCTTC AGTTTGCACC 1550 CTGGCCTTAG TGACTTGTTT TCAAGTTTTA AATGGGGTTC TCTTTTGCAA 1600 | var(1562):[A:0.01] CTGTGAGAGC ATTAAATAAA TCAGCAACTA TTAGCACCCA AGGAAGCTAA 1650 CTAATCCTTG CCTACTGAAG GTCCGTGGTG CCGACCCTTC TTGGCTCCTA 1700 CCAGACCCTT CCTTGGCGGT CCAAGGAAGC CAAGTCGTCA GTCCCCACAG 1750 ACTCACCTCT TAGAGATTTC TCAACTACAA GGACTTAGGC AAGGTTTCCC 1800 | var(1756):[T:0.01] TTTTGACTGG AAGGCTTGTA GAAACGTGAC AACCCGCCTT CCCTAACACT 1850 CATGTCACAG CGGTAGCGGA CCGTATTCTG GGACAAATGG AACTCACGAC 1900 | var(1898):[A:0.42] ATTCCAAAGA AAGGTCAGCC GCAAGCGAAC TTAGCACTGG CTACACCCTC 1950 | Exon 1 | UTR CTCAATTCTG GTTGGCGAGA TGCGCTCTTC CCGGAAGTGA CGCACAAGTG 2000 | var(1997):[C:0.01] CCGGCGGAAG GGGAAGTCCA GGAGCATGGG TGGTTTTTTT CCCCCTACCG 2050 | var(2021):[A:0.01] AGGTCCGTGA GGTGTGTGCT AACCAAGGGG CGGCTCACAA CCGTGACAGA 2100 CTGCCATTCC TGAGTCTCTT CTGGCCATGG GCCCCCGGAG CCGTGAGCGT 2150 M G P R S R E R 8 CGGGCAGGCG CGGTACAGAA CACCAACGAC AGCAGCGCCC TCAGCAAGCG 2200 R A G A V Q N T N D S S A L S K R 25 TTCCCTGGCC GCGCGCGGGT ACGTGCAGGA CCCCTTTGCC GCGTTGCTGG 2250 S L A A R G Y V Q D P F A A L L 41 TTCCGGGCGC GGCGCGCCGC GCACCGCTCA TTCACCGAGG CTACTACGTC 2300 V P G A A R R A P L I H R G Y Y V 58 CGCGCACGCG CCGTGAGGCA CTGCGTGCGC GCTTTTTTGG AGCAGATTGG 2350 | var(2325):[C:0.02] R A R A V R H C V R A F L E Q I G 75 CGCGCCCCAG GCCGCGCTTC GCGCGCAGAT CTTGTCTCTC GGCGCTGGCT 2400 A P Q A A L R A Q I L S L G A G 91 TCGACTCGCT CTATTTTCGC TTAAAAACCG CGGGCCGCCT GGCCCGGGCT 2450 F D S L Y F R L K T A G R L A R A 108 GCAGTCTGGG AGGTGGATTT TCCGGACGTG GCGCGGCGCA AAGCAGAAAG 2500 A V W E V D F P D V A R R K A E R 125 GATTGGAGAG ACGCCAGAGC TGTGCGCGTT AACCGGGCCT TTCGAGAGGG 2550 | var(2549):[T:0.07] I G E T P E L C A L T G P F E R 141 GGGAGCCCGC GTCCGCGCTG TGCTTTGAGA GCGCAGACTA CTGCATCCTG 2600 | var(2572):[A:0.01] G E P A S A L C F E S A D Y C I L 158 GGTCTGGACT TGCGGCAGCT CCAGCGAGTG GAGGAGGCCC TGGGCGCCGC 2650 G L D L R Q L Q R V E E A L G A A 175 GGGGCTCGAC GCAGCCTCAC CCACTCTGCT CCTGGCCGAG GCGGTGCTGA 2700 G L D A A S P T L L L A E A V L 191 CCTACCTCGA GCCGGAGAGT GCCGCGGCCC TCATCGCCTG GGCAGCCCAG 2750 T Y L E P E S A A A L I A W A A Q 208 CGTTTTCCTA ATGCCCTTTT CGTGGTCTAT GAGCAGATGA GGCCTCAAGA 2800 R F P N A L F V V Y E Q M R P Q D 225 CGCCTTTGGC CAGTTCATGC TGCAACATTT TCGGCAGCTA AACTCCCCCC 2850 A F G Q F M L Q H F R Q L N S P 241 TGCATGGCCT GGAGCGTTTT CCTGACGTGG AGGCGCAGCG GCGCCGCTTC 2900 | var(2867):[C:0.42] L H G L E R F P D V E A Q R R R F 258 CTTCAAGCTG GCTGGACCGC CTGCGGTGCC GTGGACATGA ATGAATTCTA 2950 L Q A G W T A C G A V D M N E F Y 275 TCACTGCTTT CTTCCCGCAG AAGAACGCCG GCGGGTGGAA AATATTGAAC 3000 H C F L P A E E R R R V E N I E 291 CCTTTGACGA ATTTGAGGAG TGGCATCTGA AGTGCGCCCA TTATTTCATT 3050 | var(3047):[T:0.01] P F D E F E E W H L K C A H Y F I 308 CTGGCAGCTT CTAGGGGAGA CACCCTCTCC CACACCCTAG TGTTTCCATC 3100 L A A S R G D T L S H T L V F P S 325 CTCAGAGGCA TTTCCTCGCG TAAATCCTGC TTCGCCTTCA GGGGTATTCC 3150 S E A F P R V N P A S P S G V F 341 CTGCCAGCGT AGTCAGTAGC GAGGGCCAGG TCCCAAACCT GAAGAGATAT 3200 P A S V V S S E G Q V P N L K R Y 358 GGCCACGCCT CTGTCTTCTT GAGCCCAGAC GTTATTCTCA GTGCAGGAGG 3250 G H A S V F L S P D V I L S A G G 375 ATTTGGAGAG CAGGAGGGGC GGCACTGCCG AGTGAGCCAG TTTCACTTGC 3300 F G E Q E G R H C R V S Q F H L 391 TCTCAAGAGA TTGTGACTCT GAATGGAAAG GCAGCCAAAT AGGCAGTTGT 3350 L S R D C D S E W K G S Q I G S C 408 GGGACTGGAG TTCAGTGGGA TGGACGCCTT TATCACACCA TGACAAGACT 3400 G T G V Q W D G R L Y H T M T R L 425 CTCAGAGAGT CGGGTTCTGG TTCTGGGAGG GAGACTGTCC CCAGTAAGTC 3450 S E S R V L V L G G R L S P V S 441 CAGCCTTGGG GGTTCTCCAG CTTCATTTTT TTAAGAGTGA GGATAATAAC 3500 P A L G V L Q L H F F K S E D N N 458 ACTGAGGACC TGAAAGTGAC AATAACAAAG GCTGGCCGAA AGGATGATTC 3550 T E D L K V T I T K A G R K D D S 475 CACTTTGTGT TGTTGGCGGC ATTCAACAAC AGAAGTGTCC TGTCAGAATC 3600 T L C C W R H S T T E V S C Q N 491 AGGAATATTT GTTTGTGTAT GGGGGTCGAA GCGTGGTGGA ACCTGTACTA 3650 Q E Y L F V Y G G R S V V E P V L 508 AGTGACTGGC ATTTCCTCCA TGTAGGGACA ATGGCTTGGG TCAGGATCCC 3700 | var(3678):[G:0.01] S D W H F L H V G T M A W V R I P 525 AGTGGAGGGA GAAGTACCTG AAGCCCGGCA TTCTCACAGT GCCTGCACTT 3750 V E G E V P E A R H S H S A C T 541 GGCAAGGGGG AGCCCTTATT GCTGGAGGTC TCGGGGCTTC TGAGGAGCCA 3800 W Q G G A L I A G G L G A S E E P 558 TTGAACTCTG TGCTCTTTCT GAGACCAATC TCTTGTGGAT TCCTCTGGGA 3850 L N S V L F L R P I S C G F L W E 575 GTCAGTAGAC ATCCAGCCTC CCATTACCCC AAGGTACTCC CACACAGCTC 3900 S V D I Q P P I T P R Y S H T A 591 ATGTGCTCAA TGGAAAGCTG TTACTGGTTG GAGGGATCTG GATTCATTCC 3950 H V L N G K L L L V G G I W I H S 608 TCCTCATTTC CTGGAGTGAC TGTGATCAAT TTGACTACAG GATTGAGCTC 4000 S S F P G V T V I N L T T G L S S 625 TGAGTATCAG ATTGACACAA CATATGTGCC ATGGCCATTA ATGTTACACA 4050 E Y Q I D T T Y V P W P L M L H 641 ACCATACTAG TATCCTTCTT CCTGAAGAGC AACAGCTCCT GCTCCTTGGA 4100 N H T S I L L P E E Q Q L L L L G 658 GGTGGTGGGA ACTGCTTTTC CTTTGGTACC TACTTCAACC CCCATACAGT 4150 G G G N C F S F G T Y F N P H T V 675 CACATTAGAC CTTTCTTCCT TAAGTGCTGG GCAGTAAGGA CTGGACTAAT 4200 | UTR T L D L S S L S A G Q 686 ATTCAGGACC CACTAAAGTA GACAATAAAG TTTTCCACAA ATAGGATGAC 4250 CCTCTAGCTA TAGATACTGC CACTCCTCCT TTCCCCATCC TTTTTTTCCC 4300 TTAGCACTAT TCAGTGCAAA AAGTGAAAAA GGTTGGTAAA ATAGGTAAAA 4350 TACCTAGAAA CAATCACTAC AGAAAACAGC TGAAGACAGT GGCCATGCAG 4400 | var(4371):[G:0.17] TCCGAGAGGA GTAGTGGTCT GCCTCTAATT TTCTAATCTA AGTTCGTTTA 4450 TTGAGTTACA GTGGTCTTTA GTAAAGTAAA ACAATTTCCC AATCCCAGGC 4500 CTTGTGATTT GAGATGGTAC CTTAGAAAAA GTTACACGCA GTTCCGTGGT 4550 TGAATATATT TGAGATGGTA CCTTAGAAAA AGTTTCACGC AGATCCTTGG 4600 | var(4578):[G:0.01] TTGAATATAG TTGAGGGAGC GTAGTATTGA CAATTCTTCA TGTAGGAAAC 4650 CTGAAATGAA CACAGTCACA GTTTGATTAA AACATTGTCC TGTTTGTTGC 4700 | var(4694):[G:0.01] AACAGAAAAC TCGGATAGTT TTAACAACAG GAAACACTTG TAGGACTTCC 4750 | var(4741):[G:0.08] TTTACCAACA TACTTTTTAA ATGTTTTGCT ATTGGTTCCA TATTTATTTA 4800 GATTTATAAG TGTCAATAAA GCAAACTTTT GATGCCTCAA TTCATTTTGC 4850 | var(4837):[C:0.01] ACGGGGTATA ATAATGTTTT GTTCCAGATA TACTCTCCAC CTTTCACTGT 4900 | var(4863):[C:0.08] | REPEAT | var(4891):[T:0.01] | var(4900):[C:0.01] TCTGTGCTCC AAGAGGCTGA CCTTTATGGG CTGCATCAAG GAGCTCTCTT 4950 TACTTTTTGG TTGAGTTCCA CCAGTCAGAG GCACCAGAGG GGAATGGGGG 5000 | var(4970):[G:0.01] CAAAAAGAAG AGTGAGAGTG AGTTGGTATT TATTCCCAAT TCTTCCCCTG 5050 TTGGTTTGCA AGTTGGCAGT GGCAGCATTC TTCTGTCAAA GGCTACAGCT 5100 CCTGCCGTGT AATCCTTTCC TGAAGACAGA GTTCTAATTC TGCATCATCC 5150 CAGGTTTCAG TAATTGTTCC TTTACTTCAC CTTTTCAGGC CTAGGAGTTG 5200 TGATGGCTCT TTGCTAGACC TGAACTGTAC TGTCCAATGT GGTAGCTATT 5250 | REPEAT GACAACATGT GACTATTTAA ACGAATTAAT AAATTCAGTG GCTTAGTCAC 5300 | var(5254):[G:0.40] ATTGACCACA TTTTAAGTGC TTAATAACTA TGTGTGGCTT TGGCTACTGT 5350 ATTAGACAAT GTAGATGTAG AACATTTCAT CGTTACAGAA ATTTCTACTG 5400 GACACTGCTG ACTGGATATC TTGACTTGGT TTCCCTTAAC CCTACTCAGC 5450 | REPEAT CCCTTATAGT TAGCATCCCA TTAAACTCAA TTATCCCTTT TAAATGGGAA 5500 TCTGTTGCCT AGTGAGCCAT GTGAGATCAA TGAAATAGCT ATTCATCCTT 5550 AAAATTTGAG CCTTAATTTG TCATCTAAAT TATGCATACC TTGTGAAATA 5600 TACACCTCAA AAAATGTAGT GGCTTTGGTG GTAATAAGTG TATTACTTTA 5650 GTATTTCTTC TTAGTCCTAG AAACCTTAGT AGTTTTCATT CTACAAGTGC 5700 | var(5675):[T:0.04] CTAAATGATT ATTATGAACC ATCATTGATG ACAAATTGCA TCCTTTATTT 5750 CTATTAATTT TGCATATAAA TGGATGTGAA AGGTGATTAA TATAAAAACC 5800 | NOT SCANNED AAGTAGCAAA CACAAACCTA AGTGTATGGA GAGGACAGTC TTGGCTCTGT 5850 TAGATGAAGC CTCCCCGGGG GAGACCAGCT GAATGAGGGT TGTGGTATAG 5900 | REPEAT GCTGGGCATG GTGGCTCACG CCTATAATTC CAGCACTTTG GGAGGCCAAG 5950 ACAGAAGGAT CACTTAAAGC CAGGAGTTTA AGACCAGCCC AGGCAACAAA 6000 GTCAGATCCC CATCTCTACA AAAAAATAAG TAGGCACGGT GGTGTGTGCT 6050 TGTAGTCTTG GATACTCTGG AGGCTGAGGT GATAGTGAGC TGTGATTGTG 6100 CCACTGCACT CCTGCCTGGT TGACAGAGTG AGACCCCGTC TCTTAAAAAG 6150 AAAAAAAAAA AAGGTTGTTG TCCAACTTCA GCTTTCCTGA GACTTTGTAA 6200 GAGCCATTTC TAGGGAAAGC ATTGGTTATG GCTATGACTG AGTCCTGGGA 6250 AACAGGGCTT ATTACAGCTG GGAAGACATC TGGCAAGGCG ATCAGTGGGC 6300 CAGGTAGTAG AAAACTGGCA GGGAATATGA TCAGCAGGAG AAAATGGCTG 6350 TTCTGTATTT CCTGTTTCTA AGTTTACTAC AGCACACCCC AGCTTTCAGG 6400 AG