Site Allele1 Total-pop Allele2 Total-pop hz 000293 C 0.01 T 0.99 0.01 000535 C 0.26 A 0.74 0.39 000922 T 0.08 C 0.92 0.15 001180 T 0.39 C 0.61 0.48 001193 C 0.04 G 0.96 0.08 001214 G 0.40 C 0.60 0.48 001539 C 0.05 G 0.95 0.09 001616 A 0.01 G 0.99 0.02 001672 A 0.01 G 0.99 0.01 001696 G 0.01 A 0.99 0.01 001945 A 0.01 C 0.99 0.01 002132 - 0.02 + 0.98 0.05 002187 T 0.01 G 0.99 0.03 002273 + 0.07 - 0.93 0.14 002287 C 0.01 G 0.99 0.01 002366 C 0.01 G 0.99 0.01 002603 A 0.02 C 0.98 0.04 002718 T 0.02 G 0.98 0.04 002821 C 0.03 G 0.97 0.06 002828 A 0.01 G 0.99 0.01 002860 G 0.02 A 0.98 0.04 003413 T 0.05 C 0.95 0.10 003641 A 0.09 G 0.91 0.16 004115 T 0.01 G 0.99 0.01 004416 T 0.01 A 0.99 0.01 004818 T 0.01 G 0.99 0.01 005008 C 0.01 A 0.99 0.03 005053 G 0.04 A 0.96 0.07 005221 C 0.02 T 0.98 0.03 005335 G 0.01 A 0.99 0.01 005519 C 0.28 A 0.72 0.40 005614 G 0.01 C 0.99 0.02 005647 A 0.03 G 0.97 0.05 005881 G 0.01 A 0.99 0.01 005948 T 0.01 C 0.99 0.01 006042 - 0.02 + 0.98 0.03 Note: pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 002132: CCCC 002273: CA 006042: gtgag