Site Genotype1 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype2 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype3 AD-pop ED-pop HD-pop XD-pop Total-pop AD-chi2 ED-chi2 HD-chi2 XD-chi2 Total-chi2 000166 AA 0 0 0 0 0 AG 0 0 1 0 1 GG 25 20 20 22 87 0.000 0.000 0.012 0.000 0.003 000330 CC 26 20 21 21 88 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.012 0.003 000562 CC 0 0 0 0 0 CG 1 0 0 0 1 GG 26 21 20 24 91 0.010 0.000 0.000 0.000 0.003 001672 AA 0 0 0 0 0 AG 0 0 1 0 1 GG 27 22 21 24 94 0.000 0.000 0.012 0.000 0.003 002450 CC 0 9 14 24 47 CG 10 5 7 0 22 GG 16 7 1 0 24 1.474 5.666 0.011 0.000 22.885 003276 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 25 19 18 19 81 0.040 0.000 0.000 0.000 0.012 003393 CC 11 16 20 20 67 CT 9 1 1 0 11 TT 2 0 0 0 2 0.007 0.016 0.012 0.000 2.913 003488 AA 0 0 0 0 0 AC 3 0 0 0 3 CC 23 19 21 23 86 0.097 0.000 0.000 0.000 0.026 005081 AA 0 0 0 0 0 AG 8 0 0 0 8 GG 19 20 16 20 75 0.817 0.000 0.000 0.000 0.213 005101 CC 27 21 16 18 82 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.014 0.003 005527 CC 0 0 0 0 0 CT 0 0 1 0 1 TT 27 21 20 19 87 0.000 0.000 0.012 0.000 0.003 007572 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 25 22 21 24 92 0.040 0.000 0.000 0.000 0.011 007694 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 21 24 93 0.010 0.000 0.000 0.000 0.003 007911 AA 0 0 0 0 0 AG 8 6 0 0 14 GG 15 10 19 22 66 1.019 0.852 0.000 0.000 0.736 008840 CC 0 0 0 0 0 CT 1 6 0 0 7 TT 13 6 16 21 56 0.019 1.333 0.000 0.000 0.218 009747 AA 11 8 11 12 42 AC 6 6 4 7 23 CC 2 0 5 2 9 0.655 1.041 6.282 0.399 3.715 009880 CC 22 12 19 22 75 CT 0 1 1 0 2 TT 0 1 0 0 1 0.000 5.498 0.013 0.000 18.487 011278 CC 23 11 19 21 74 CT 1 0 0 0 1 TT 0 0 0 0 0 0.011 0.000 0.000 0.000 0.003 012469 CC 7 9 15 24 55 CT 12 6 6 0 24 TT 6 7 1 0 14 0.037 4.455 0.153 0.000 12.010 012553 CC 17 22 21 24 84 CT 8 0 1 0 9 TT 0 0 0 0 0 0.907 0.000 0.012 0.000 0.240 012709 AA 0 0 5 12 17 AG 2 2 8 11 23 GG 23 19 7 1 50 0.043 0.053 0.737 0.618 15.092 012714 CC 7 9 13 24 53 CT 13 5 5 0 23 TT 5 7 1 0 13 0.055 5.666 0.294 0.000 11.047 013025 AA 0 0 0 0 0 AG 7 0 1 0 8 GG 11 21 20 24 76 1.049 0.000 0.012 0.000 0.210 013322 -- 20 19 20 24 83 +- 4 1 1 0 6 ++ 0 0 0 0 0 0.198 0.013 0.012 0.000 0.108 013469 CC 0 0 0 0 0 CT 12 6 6 3 27 TT 15 14 15 20 64 2.204 0.623 0.583 0.112 2.761 013511 -- 0 0 0 0 0 +- 1 0 0 0 1 ++ 26 21 21 23 91 0.010 0.000 0.000 0.000 0.003 013530 CC 17 21 20 23 81 CT 9 0 1 0 10 TT 0 0 0 0 0 1.139 0.000 0.012 0.000 0.308 014165 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 21 22 24 93 0.010 0.000 0.000 0.000 0.003 017213 GG 27 21 21 22 91 GT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 017819 AA 0 4 1 11 16 AG 5 6 6 9 26 GG 21 9 10 3 43 0.294 1.963 0.006 0.277 8.681 018043 AA 4 7 1 0 12 AG 14 6 6 0 26 GG 6 8 15 24 53 0.734 3.834 0.153 0.000 7.290 018268 AA 0 0 0 0 0 AT 0 0 1 0 1 TT 25 21 21 23 90 0.000 0.000 0.012 0.000 0.003 018274 AA 1 0 0 0 1 AC 12 9 2 0 23 CC 11 10 20 23 64 1.059 1.830 0.050 0.000 0.460 018667 CC 19 15 15 22 71 CT 7 6 6 0 19 TT 0 0 0 0 0 0.629 0.583 0.583 0.000 1.253 018764 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 25 22 22 22 91 0.040 0.000 0.000 0.000 0.011 018814 GG 0 0 0 0 0 GT 3 0 0 0 3 TT 23 22 22 22 89 0.097 0.000 0.000 0.000 0.025 019210 GG 19 9 10 4 42 GT 5 8 11 9 33 TT 0 4 1 11 16 0.324 0.777 0.889 0.780 4.023 019228 AA 25 21 22 23 91 AG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 019616 CC 0 0 0 0 0 CT 1 9 1 0 11 TT 23 12 20 23 78 0.011 1.562 0.012 0.000 0.386 022570 CC 7 3 13 11 34 CT 14 8 8 3 33 TT 3 2 0 0 5 0.960 0.737 1.163 0.202 0.639 022571 AA 4 1 1 0 6 AG 13 4 3 0 20 GG 6 8 17 14 45 0.445 0.231 2.136 0.000 2.650 022782 CC 23 13 19 13 68 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.019 0.004 022879 CC 19 10 20 14 63 CT 1 2 0 0 3 TT 0 0 0 0 0 0.013 0.099 0.000 0.000 0.036 022958 AA 17 12 18 12 59 AG 2 0 0 0 2 GG 0 0 0 0 0 0.059 0.000 0.000 0.000 0.017 023014 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 17 10 15 10 52 0.059 0.000 0.000 0.000 0.019 024206 CC 26 20 21 24 91 CT 0 1 0 0 1 TT 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 024254 AA 26 20 20 24 90 AG 0 1 1 0 2 GG 0 0 0 0 0 0.000 0.012 0.012 0.000 0.011 024323 GG 7 11 15 23 56 GT 14 7 4 0 25 TT 4 2 1 0 7 0.465 0.299 0.930 0.000 2.741 025290 CC 16 11 17 21 65 CT 1 0 0 0 1 TT 0 0 0 0 0 0.016 0.000 0.000 0.000 0.004 027048 CC 12 15 15 20 62 CT 13 6 7 4 30 TT 2 1 0 0 3 0.364 0.153 0.787 0.198 0.075 027094 AA 21 22 22 24 89 AG 6 0 0 0 6 GG 0 0 0 0 0 0.422 0.000 0.000 0.000 0.101 027295 AA 26 22 22 24 94 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 027629 CC 18 10 10 3 41 CT 6 6 9 8 29 TT 0 3 1 11 15 0.490 1.377 0.330 0.577 5.195 031781 CC 1 2 0 0 3 CT 12 4 6 0 22 TT 5 5 7 10 27 2.918 0.505 1.170 0.000 0.294 032707 CC 19 16 15 20 70 CT 6 3 7 3 19 TT 0 0 0 0 0 0.465 0.140 0.787 0.112 1.271 032822 CC 25 20 22 23 90 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 033550 AA 14 2 6 1 23 AG 8 8 7 9 32 GG 3 9 9 12 33 1.064 0.012 2.719 0.182 6.097 033589 CC 20 19 21 22 82 CT 4 0 0 0 4 TT 0 0 0 0 0 0.198 0.000 0.000 0.000 0.049 033623 AA 1 0 0 0 1 AC 5 0 0 0 5 CC 19 20 22 23 84 0.718 0.000 0.000 0.000 5.936 034106 AA 0 0 0 0 0 AT 0 0 0 1 1 TT 26 22 21 23 92 0.000 0.000 0.000 0.011 0.003 034148 AA 0 0 4 2 6 AG 3 2 8 10 23 GG 23 19 9 12 63 0.097 0.053 0.777 0.002 3.269 035099 CC 2 3 0 0 5 CG 18 10 9 2 39 GG 5 7 10 22 44 5.314 0.035 1.830 0.045 0.934 035154 CC 24 14 18 24 80 CT 1 6 0 0 7 TT 0 0 0 0 0 0.010 0.623 0.000 0.000 0.153 035362 CC 24 21 22 24 91 CT 2 0 0 0 2 TT 0 0 0 0 0 0.042 0.000 0.000 0.000 0.011 035560 AA 0 0 0 0 0 AC 0 0 1 0 1 CC 27 22 21 24 94 0.000 0.000 0.012 0.000 0.003 035630 AA 27 22 20 24 93 AG 0 0 2 0 2 GG 0 0 0 0 0 0.000 0.000 0.050 0.000 0.011 035716 CC 0 0 0 0 0 CT 0 0 4 4 8 TT 27 22 18 20 87 0.000 0.000 0.220 0.198 0.184 038096 CC 27 20 22 23 92 CT 0 1 0 1 2 TT 0 0 0 0 0 0.000 0.012 0.000 0.011 0.011 039096 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 27 22 22 23 94 0.000 0.000 0.000 0.011 0.003 039210 AA 0 0 0 0 0 AG 8 6 7 0 21 GG 19 16 15 24 74 0.817 0.548 0.787 0.000 1.467 039845 CC 21 21 21 24 87 CT 4 0 0 0 4 TT 1 0 0 0 1 1.578 0.000 0.000 0.000 8.890 040249 AA 26 20 21 24 91 AG 0 1 0 0 1 GG 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 040280 AA 0 0 0 0 0 AG 0 0 1 0 1 GG 26 21 20 24 91 0.000 0.000 0.012 0.000 0.003 041358 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 27 20 22 22 91 0.000 0.000 0.000 0.011 0.003 041728 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 25 20 22 24 91 0.010 0.000 0.000 0.000 0.003 041734 CC 25 12 15 2 54 CT 1 6 7 12 26 TT 0 2 0 10 12 0.010 0.800 0.787 0.375 7.524 042890 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 24 21 18 17 80 0.010 0.000 0.000 0.000 0.003 042906 -- 12 15 7 13 47 +- 9 5 9 9 32 ++ 5 2 6 2 15 1.672 2.001 0.714 0.061 4.968 043349 AA 0 0 0 0 0 AG 0 0 1 0 1 GG 26 22 20 23 91 0.000 0.000 0.012 0.000 0.003 043467 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 26 22 22 22 92 0.000 0.000 0.000 0.011 0.003 043838 CC 25 22 22 24 93 CT 2 0 0 0 2 TT 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 043855 CC 24 22 22 24 92 CT 3 0 0 0 3 TT 0 0 0 0 0 0.093 0.000 0.000 0.000 0.024 044798 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 22 14 21 22 79 0.045 0.000 0.000 0.000 0.013 045137 CC 26 15 22 24 87 CT 1 7 0 0 8 TT 0 0 0 0 0 0.010 0.787 0.000 0.000 0.184 045190 CC 23 20 21 24 88 CT 4 2 1 0 7 TT 0 0 0 0 0 0.173 0.050 0.012 0.000 0.139 045273 AA 0 0 0 0 0 AG 0 0 1 0 1 GG 27 22 21 24 94 0.000 0.000 0.012 0.000 0.003 045297 GG 27 22 22 23 94 GT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 045330 AA 3 0 0 0 3 AC 7 2 1 0 10 CC 17 20 21 23 81 2.283 0.050 0.012 0.000 9.438 045669 AA 20 10 10 20 60 AG 7 12 12 3 34 GG 0 0 0 0 0 0.599 3.094 3.094 0.112 4.582 046373 CC 1 0 0 0 1 CG 7 0 0 0 7 GG 19 22 22 24 87 0.120 0.000 0.000 0.000 3.201 046425 AA 0 0 0 0 0 AC 0 0 5 1 6 CC 26 21 17 23 87 0.000 0.000 0.362 0.011 0.103 047250 CC 23 20 19 21 83 CT 2 0 0 0 2 TT 0 0 0 0 0 0.043 0.000 0.000 0.000 0.012 047452 AA 25 21 22 24 92 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 047603 AA 25 20 21 23 89 AG 0 0 1 0 1 GG 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 048704 CC 24 14 19 22 79 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 048918 AA 14 9 11 23 57 AG 7 5 8 0 20 GG 3 3 1 0 7 1.642 1.830 0.089 0.000 5.789 049212 CC 23 20 20 22 85 CT 2 0 0 0 2 TT 0 0 0 0 0 0.043 0.000 0.000 0.000 0.012 049327 GG 20 14 19 22 75 GT 2 0 0 0 2 TT 0 0 0 0 0 0.050 0.000 0.000 0.000 0.013 049848 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 25 18 18 22 83 0.010 0.000 0.000 0.000 0.003 050178 AA 0 0 0 0 0 AG 0 1 1 0 2 GG 27 20 21 24 92 0.000 0.012 0.012 0.000 0.011 050183 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 26 21 22 24 93 0.010 0.000 0.000 0.000 0.003 050278 CC 23 22 21 24 90 CG 4 0 0 0 4 GG 0 0 0 0 0 0.173 0.000 0.000 0.000 0.044 050283 CC 24 22 21 24 91 CT 3 0 0 0 3 TT 0 0 0 0 0 0.093 0.000 0.000 0.000 0.025 050780 CC 25 20 19 24 88 CT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.013 0.000 0.003 050960 AA 23 21 21 24 89 AG 3 0 0 0 3 GG 0 0 0 0 0 0.097 0.000 0.000 0.000 0.025 051150 CC 23 13 21 23 80 CT 3 0 0 0 3 TT 0 0 0 0 0 0.097 0.000 0.000 0.000 0.028 051490 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 25 19 22 23 89 0.010 0.000 0.000 0.000 0.003 Note: AD: African_Descent ED: European_Descent HD: Hispanic_Descent XD: Asian_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 013322: c 013511: tcct 042906: GT