Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000166 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 000330 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 000562 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001672 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 002450 00000 ------------ C 0.21 0.17 0.55 0.80 1.00 0.62 G 0.79 0.83 0.45 0.20 0.00 0.38 0000 --- --- --- --- 003276 00000 ------------ G 0.97 0.96 1.00 1.00 1.00 0.99 A 0.03 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 003393 00000 ------------ C 0.77 0.64 0.97 0.98 1.00 0.91 T 0.23 0.36 0.03 0.02 0.00 0.09 0000 --- --- --- --- 003488 00000 ------------ C 0.93 0.96 1.00 1.00 1.00 0.98 A 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 005081 00000 ------------ G 0.90 0.79 1.00 1.00 1.00 0.95 A 0.10 0.21 0.00 0.00 0.00 0.05 0000 --- --- --- --- 005101 00000 ------------ C 1.00 1.00 1.00 1.00 0.97 0.99 T 0.00 0.00 0.00 0.00 0.03 0.01 0000 --- --- --- --- 005527 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 007572 00519 NON-SYN G 0.97 0.96 1.00 1.00 1.00 0.99 A 0.03 0.04 0.00 0.00 0.00 0.01 0144 CGC CAC ARG(R) HIS(H) 007694 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 007911 00000 ------------ G 0.88 0.77 0.81 1.00 1.00 0.91 A 0.12 0.23 0.19 0.00 0.00 0.09 0000 --- --- --- --- 008840 00000 ------------ T 0.94 1.00 0.75 1.00 1.00 0.94 C 0.06 0.00 0.25 0.00 0.00 0.06 0000 --- --- --- --- 009747 00000 ------------ A 0.81 0.58 0.79 0.65 0.74 0.72 C 0.19 0.42 0.21 0.35 0.26 0.28 0000 --- --- --- --- 009880 00728 NON-SYN C 1.00 1.00 0.89 0.97 1.00 0.97 T 0.00 0.00 0.11 0.03 0.00 0.03 0214 CGG TGG ARG(R) TRP(W) 011278 00000 ------------ C 1.00 0.94 1.00 1.00 1.00 0.99 T 0.00 0.06 0.00 0.00 0.00 0.01 0000 --- --- --- --- 012469 00000 ------------ C 0.54 0.50 0.55 0.82 1.00 0.72 T 0.46 0.50 0.45 0.18 0.00 0.28 0000 --- --- --- --- 012553 01006 SYNON C 0.86 0.82 1.00 0.98 1.00 0.95 T 0.14 0.18 0.00 0.02 0.00 0.05 0306 CCC CCT PRO(P) PRO(P) 012709 00000 ------------ G 0.93 1.00 0.95 0.55 0.27 0.68 A 0.07 0.00 0.05 0.45 0.73 0.32 0000 --- --- --- --- 012714 00000 ------------ C 0.57 0.50 0.55 0.82 1.00 0.72 T 0.43 0.50 0.45 0.18 0.00 0.28 0000 --- --- --- --- 013025 00000 ------------ G 0.85 0.75 1.00 0.98 1.00 0.95 A 0.15 0.25 0.00 0.02 0.00 0.05 0000 --- --- --- --- 013322 00000 ------------ - 0.89 0.95 0.97 0.98 1.00 0.97 + 0.11 0.05 0.03 0.02 0.00 0.03 0000 --- --- --- --- 013469 00000 ------------ T 0.83 0.71 0.85 0.86 0.93 0.85 C 0.17 0.29 0.15 0.14 0.07 0.15 0000 --- --- --- --- 013511 00000 ------------ - 0.00 0.04 0.00 0.00 0.00 0.01 + 1.00 0.96 1.00 1.00 1.00 0.99 0000 --- --- --- --- 013530 00000 ------------ C 0.87 0.77 1.00 0.98 1.00 0.95 T 0.13 0.23 0.00 0.02 0.00 0.05 0000 --- --- --- --- 014165 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 017213 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 017819 00000 ------------ G 0.89 0.92 0.63 0.76 0.33 0.66 A 0.11 0.08 0.37 0.24 0.67 0.34 0000 --- --- --- --- 018043 00000 ------------ G 0.46 0.62 0.52 0.82 1.00 0.73 A 0.54 0.38 0.48 0.18 0.00 0.27 0000 --- --- --- --- 018268 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 018274 00000 ------------ C 0.71 0.71 0.76 0.95 1.00 0.86 A 0.29 0.29 0.24 0.05 0.00 0.14 0000 --- --- --- --- 018667 00000 ------------ C 0.82 0.92 0.86 0.86 1.00 0.89 T 0.18 0.08 0.14 0.14 0.00 0.11 0000 --- --- --- --- 018764 00000 ------------ G 1.00 0.92 1.00 1.00 1.00 0.99 A 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 018814 00000 ------------ T 0.93 0.96 1.00 1.00 1.00 0.98 G 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 019210 00000 ------------ G 0.88 0.92 0.62 0.70 0.35 0.64 T 0.12 0.08 0.38 0.30 0.65 0.36 0000 --- --- --- --- 019228 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 019616 00000 ------------ T 0.96 1.00 0.79 0.98 1.00 0.94 C 0.04 0.00 0.21 0.02 0.00 0.06 0000 --- --- --- --- 022570 00000 ------------ C 0.62 0.55 0.54 0.81 0.89 0.70 T 0.38 0.45 0.46 0.19 0.11 0.30 0000 --- --- --- --- 022571 00000 ------------ G 0.50 0.59 0.77 0.88 1.00 0.77 A 0.50 0.41 0.23 0.12 0.00 0.23 0000 --- --- --- --- 022782 00000 ------------ C 1.00 1.00 1.00 1.00 0.96 0.99 T 0.00 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- 022879 00000 ------------ C 0.95 1.00 0.92 1.00 1.00 0.98 T 0.05 0.00 0.08 0.00 0.00 0.02 0000 --- --- --- --- 022958 00000 ------------ A 0.94 0.95 1.00 1.00 1.00 0.98 G 0.06 0.05 0.00 0.00 0.00 0.02 0000 --- --- --- --- 023014 00000 ------------ G 1.00 0.90 1.00 1.00 1.00 0.98 A 0.00 0.10 0.00 0.00 0.00 0.02 0000 --- --- --- --- 024206 00000 ------------ C 1.00 1.00 0.98 1.00 1.00 0.99 T 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 024254 00000 ------------ A 1.00 1.00 0.98 0.98 1.00 0.99 G 0.00 0.00 0.02 0.02 0.00 0.01 0000 --- --- --- --- 024323 00000 ------------ G 0.54 0.59 0.72 0.85 1.00 0.78 T 0.46 0.41 0.28 0.15 0.00 0.22 0000 --- --- --- --- 025290 00000 ------------ C 1.00 0.92 1.00 1.00 1.00 0.99 T 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 027048 00000 ------------ C 0.77 0.58 0.82 0.84 0.92 0.81 T 0.23 0.42 0.18 0.16 0.08 0.19 0000 --- --- --- --- 027094 00000 ------------ A 0.87 0.92 1.00 1.00 1.00 0.97 G 0.13 0.08 0.00 0.00 0.00 0.03 0000 --- --- --- --- 027295 00000 ------------ A 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 027629 00000 ------------ C 0.82 0.95 0.68 0.72 0.32 0.65 T 0.18 0.05 0.32 0.28 0.68 0.35 0000 --- --- --- --- 031781 00000 ------------ T 0.62 0.60 0.64 0.77 1.00 0.73 C 0.38 0.40 0.36 0.23 0.00 0.27 0000 --- --- --- --- 032707 00000 ------------ C 0.86 0.91 0.92 0.84 0.93 0.89 T 0.14 0.09 0.08 0.16 0.07 0.11 0000 --- --- --- --- 032822 00000 ------------ C 1.00 0.95 1.00 1.00 1.00 0.99 T 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 033550 00000 ------------ G 0.39 0.14 0.68 0.57 0.75 0.56 A 0.61 0.86 0.32 0.43 0.25 0.44 0000 --- --- --- --- 033589 00000 ------------ C 0.89 0.95 1.00 1.00 1.00 0.98 T 0.11 0.05 0.00 0.00 0.00 0.02 0000 --- --- --- --- 033623 02324 NON-SYN C 0.89 0.82 1.00 1.00 1.00 0.96 A 0.11 0.18 0.00 0.00 0.00 0.04 0746 CAG AAG GLN(Q) LYS(K) 034106 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 034148 00000 ------------ G 0.90 1.00 0.95 0.62 0.71 0.81 A 0.10 0.00 0.05 0.38 0.29 0.19 0000 --- --- --- --- 035099 02460 NON-SYN G 0.57 0.55 0.60 0.76 0.96 0.72 C 0.43 0.45 0.40 0.24 0.04 0.28 0791 AGA ACA ARG(R) THR(T) 035154 02515 SYNON C 0.97 1.00 0.85 1.00 1.00 0.96 T 0.03 0.00 0.15 0.00 0.00 0.04 0809 AAC AAT ASN(N) ASN(N) 035362 00000 ------------ C 1.00 0.92 1.00 1.00 1.00 0.99 T 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 035560 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 035630 00000 ------------ A 1.00 1.00 1.00 0.95 1.00 0.99 G 0.00 0.00 0.00 0.05 0.00 0.01 0000 --- --- --- --- 035716 00000 ------------ T 1.00 1.00 1.00 0.91 0.92 0.96 C 0.00 0.00 0.00 0.09 0.08 0.04 0000 --- --- --- --- 038096 00000 ------------ C 1.00 1.00 0.98 1.00 0.98 0.99 T 0.00 0.00 0.02 0.00 0.02 0.01 0000 --- --- --- --- 039096 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 039210 00000 ------------ G 0.93 0.75 0.86 0.84 1.00 0.89 A 0.07 0.25 0.14 0.16 0.00 0.11 0000 --- --- --- --- 039845 00000 ------------ C 0.89 0.88 1.00 1.00 1.00 0.97 T 0.11 0.12 0.00 0.00 0.00 0.03 0000 --- --- --- --- 040249 00000 ------------ A 1.00 1.00 0.98 1.00 1.00 0.99 G 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 040280 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 041358 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 041728 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 A 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 041734 00000 ------------ C 0.96 1.00 0.75 0.84 0.33 0.73 T 0.04 0.00 0.25 0.16 0.67 0.27 0000 --- --- --- --- 042890 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 A 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 042906 00000 ------------ - 0.57 0.71 0.80 0.52 0.73 0.67 + 0.43 0.29 0.20 0.48 0.27 0.33 0000 --- --- --- --- 043349 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 043467 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 043838 00000 ------------ C 0.97 0.96 1.00 1.00 1.00 0.99 T 0.03 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 043855 00000 ------------ C 0.90 1.00 1.00 1.00 1.00 0.98 T 0.10 0.00 0.00 0.00 0.00 0.02 0000 --- --- --- --- 044798 00000 ------------ G 0.96 0.95 1.00 1.00 1.00 0.99 A 0.04 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 045137 00000 ------------ C 0.97 1.00 0.84 1.00 1.00 0.96 T 0.03 0.00 0.16 0.00 0.00 0.04 0000 --- --- --- --- 045190 00000 ------------ C 0.87 1.00 0.95 0.98 1.00 0.96 T 0.13 0.00 0.05 0.02 0.00 0.04 0000 --- --- --- --- 045273 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 045297 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 045330 00000 ------------ C 0.70 0.83 0.95 0.98 1.00 0.91 A 0.30 0.17 0.05 0.02 0.00 0.09 0000 --- --- --- --- 045669 00000 ------------ A 0.87 0.88 0.73 0.73 0.93 0.82 G 0.13 0.12 0.27 0.27 0.07 0.18 0000 --- --- --- --- 046373 00000 ------------ G 0.83 0.83 1.00 1.00 1.00 0.95 C 0.17 0.17 0.00 0.00 0.00 0.05 0000 --- --- --- --- 046425 00000 ------------ C 1.00 1.00 1.00 0.89 0.98 0.97 A 0.00 0.00 0.00 0.11 0.02 0.03 0000 --- --- --- --- 047250 00000 ------------ C 1.00 0.92 1.00 1.00 1.00 0.99 T 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 047452 00000 ------------ A 0.96 1.00 1.00 1.00 1.00 0.99 G 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 047603 00000 ------------ A 1.00 1.00 1.00 0.98 1.00 0.99 G 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 048704 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 048918 00000 ------------ A 0.65 0.82 0.68 0.75 1.00 0.80 G 0.35 0.18 0.32 0.25 0.00 0.20 0000 --- --- --- --- 049212 00000 ------------ C 0.96 0.95 1.00 1.00 1.00 0.99 T 0.04 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 049327 00000 ------------ G 0.92 1.00 1.00 1.00 1.00 0.99 T 0.08 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 049848 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 050178 03735 3' UTR G 1.00 1.00 0.98 0.98 1.00 0.99 A 0.00 0.00 0.02 0.02 0.00 0.01 0000 --- --- --- --- 050183 03740 3' UTR T 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 050278 03835 3' UTR C 0.93 0.92 1.00 1.00 1.00 0.98 G 0.07 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 050283 03840 3' UTR C 1.00 0.88 1.00 1.00 1.00 0.98 T 0.00 0.12 0.00 0.00 0.00 0.02 0000 --- --- --- --- 050780 04337 3' UTR C 1.00 1.00 1.00 0.97 1.00 0.99 T 0.00 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- 050960 04517 3' UTR A 0.97 0.91 1.00 1.00 1.00 0.98 G 0.03 0.09 0.00 0.00 0.00 0.02 0000 --- --- --- --- 051150 04707 3' UTR C 1.00 0.86 1.00 1.00 1.00 0.98 T 0.00 0.14 0.00 0.00 0.00 0.02 0000 --- --- --- --- 051490 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 013322: C 013511: TCCT 042906: GT