Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000230 00000 ------------ A 0.40 0.21 0.55 0.66 0.80 0.57 G 0.60 0.79 0.45 0.34 0.20 0.43 0000 --- --- --- --- 000588 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 000622 00000 ------------ A 1.00 1.00 0.98 1.00 0.85 0.96 C 0.00 0.00 0.02 0.00 0.15 0.04 0000 --- --- --- --- 001002 00000 ------------ G 1.00 1.00 0.91 0.91 1.00 0.96 A 0.00 0.00 0.09 0.09 0.00 0.04 0000 --- --- --- --- 001084 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001159 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 001170 00000 ------------ G 1.00 0.92 1.00 1.00 1.00 0.99 A 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001202 00000 ------------ G 0.61 0.38 0.78 0.78 0.83 0.71 A 0.39 0.62 0.22 0.22 0.17 0.29 0000 --- --- --- --- 001233 00000 ------------ - 0.96 1.00 0.86 0.92 1.00 0.95 + 0.04 0.00 0.14 0.08 0.00 0.05 0000 --- --- --- --- 001280 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 001291 00000 ------------ G 0.85 0.79 0.93 0.83 0.98 0.89 A 0.15 0.21 0.07 0.17 0.02 0.11 0000 --- --- --- --- 001305 00000 ------------ T 0.85 0.71 0.93 0.83 0.98 0.88 G 0.15 0.29 0.07 0.17 0.02 0.12 0000 --- --- --- --- 001423 00000 ------------ G 0.89 0.83 1.00 1.00 1.00 0.96 T 0.11 0.17 0.00 0.00 0.00 0.04 0000 --- --- --- --- 001514 00000 ------------ C 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001698 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001719 00000 ------------ C 0.90 0.83 1.00 1.00 1.00 0.96 G 0.10 0.17 0.00 0.00 0.00 0.04 0000 --- --- --- --- 001869 00000 ------------ C 1.00 0.92 1.00 1.00 1.00 0.99 T 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001873 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001966 00000 ------------ A 0.97 1.00 0.98 1.00 1.00 0.99 G 0.03 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 002040 00051 5' UTR T 0.80 0.79 0.86 0.84 0.96 0.86 C 0.20 0.21 0.14 0.16 0.04 0.14 0000 --- --- --- --- 002085 00096 NON-SYN T 0.83 0.83 0.84 0.93 0.98 0.89 C 0.17 0.17 0.16 0.07 0.02 0.11 0010 GTC GCC VAL(V) ALA(A) 002098 00109 SYNON C 0.97 0.96 1.00 1.00 1.00 0.99 T 0.03 0.04 0.00 0.00 0.00 0.01 0014 CTC CTT LEU(L) LEU(L) 002466 00477 NON-SYN C 0.90 0.82 1.00 1.00 1.00 0.96 T 0.10 0.18 0.00 0.00 0.00 0.04 0137 GCG GTG ALA(A) VAL(V) 002544 00555 NON-SYN C 0.73 0.75 0.82 0.95 1.00 0.87 G 0.27 0.25 0.18 0.05 0.00 0.13 0163 GCC GGC ALA(A) GLY(G) 002627 00638 3' UTR C 0.90 0.83 1.00 1.00 1.00 0.96 T 0.10 0.17 0.00 0.00 0.00 0.04 0000 --- --- --- --- 002646 00657 3' UTR - 0.27 0.38 0.05 0.12 0.02 0.14 + 0.73 0.62 0.95 0.88 0.98 0.86 0000 --- --- --- --- 002666 00677 3' UTR C 0.90 0.92 0.82 0.93 1.00 0.91 T 0.10 0.08 0.18 0.07 0.00 0.09 0000 --- --- --- --- 002818 00829 3' UTR C 0.77 0.71 0.95 0.88 1.00 0.89 T 0.23 0.29 0.05 0.12 0.00 0.11 0000 --- --- --- --- 002858 00869 3' UTR A 1.00 1.00 0.98 1.00 1.00 0.99 G 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 002860 00871 3' UTR T 0.93 0.96 0.95 0.89 0.98 0.94 G 0.07 0.04 0.05 0.11 0.02 0.06 0000 --- --- --- --- 002919 00000 ------------ G 0.97 0.96 1.00 1.00 1.00 0.99 A 0.03 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 002978 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 003078 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 003139 00000 ------------ G 0.86 0.92 0.98 1.00 0.86 0.93 A 0.14 0.08 0.02 0.00 0.14 0.07 0000 --- --- --- --- 003215 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 003460 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 004001 00000 ------------ A 0.36 0.21 0.83 0.71 0.83 0.64 G 0.64 0.79 0.17 0.29 0.17 0.36 0000 --- --- --- --- 004062 00000 ------------ C 0.36 0.21 0.87 0.71 0.83 0.64 G 0.64 0.79 0.13 0.29 0.17 0.36 0000 --- --- --- --- 004224 00000 ------------ A 0.96 0.96 1.00 1.00 1.00 0.99 G 0.04 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004275 00000 ------------ G 0.36 0.21 0.83 0.71 0.83 0.64 A 0.64 0.79 0.17 0.29 0.17 0.36 0000 --- --- --- --- 004286 00000 ------------ A 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004325 00000 ------------ C 1.00 1.00 1.00 0.97 1.00 0.99 T 0.00 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 001233: GTTT 002646: A