LOCUS DQ185447 4791 bp DNA linear PRI 17-SEP-2005 DEFINITION Homo sapiens interferon, alpha 1 (IFNA1) gene, complete cds. ACCESSION DQ185447 VERSION DQ185447.1 GI:74418831 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4791) AUTHORS Livingston,R.J., Rieder,M.J., Shaffer,T., Bertucci,C., Baier,C.N., Rajkumar,N., Willa,H.T., Daniels,M., Downing,T.K., Stanaway,I.B., Nguyen,C.P., Gildersleeve,H., Cassidy,C.M., Johnson,E.J., Swanson,J.E., McFarland,I., Yool,B., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-2005) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..4791 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 230 /frequency="0.43" /replace="g" repeat_region 404..1043 /rpt_family="L1" /rpt_type=dispersed variation 588 /frequency="0.01" /replace="c" variation 622 /frequency="0.04" /replace="c" variation 1002 /frequency="0.04" /replace="a" variation 1084 /frequency="0.01" /replace="g" repeat_region 1104..1213 /rpt_family="MER1_type" /rpt_type=dispersed variation 1159 /frequency="0.01" /replace="t" variation 1170 /frequency="0.01" /replace="a" variation 1202 /frequency="0.29" /replace="a" repeat_region 1214..1534 /rpt_family="Alu" /rpt_type=dispersed variation 1233..1236 /frequency="0.95" /replace="" variation 1280 /frequency="0.01" /replace="a" variation 1291 /frequency="0.11" /replace="a" variation 1305 /frequency="0.12" /replace="g" variation 1423 /frequency="0.04" /replace="t" variation 1514 /frequency="0.01" /replace="t" repeat_region 1535..1859 /rpt_family="MER1_type" /rpt_type=dispersed variation 1698 /frequency="0.01" /replace="g" variation 1719 /frequency="0.04" /replace="g" variation 1869 /frequency="0.01" /replace="t" variation 1873 /frequency="0.01" /replace="c" variation 1966 /frequency="0.01" /replace="g" gene 1990..2865 /gene="IFNA1" mRNA 1990..2865 /gene="IFNA1" /product="interferon, alpha 1" variation 2040 /gene="IFNA1" /frequency="0.14" /replace="c" CDS 2057..2626 /gene="IFNA1" /codon_start=1 /product="interferon, alpha 1" /protein_id="ABA03167.1" /db_xref="GI:74418832" /translation="MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQM SRISPSSCLMDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDE DLLDKFCTELYQQLNDLEACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYS PCAWEVVRAEIMRSLSLSTNLQERLRRKE" variation 2085 /gene="IFNA1" /frequency="0.11" /replace="c" variation 2098 /gene="IFNA1" /frequency="0.01" /replace="t" variation 2466 /gene="IFNA1" /frequency="0.04" /replace="t" variation 2544 /gene="IFNA1" /frequency="0.13" /replace="g" variation 2627 /gene="IFNA1" /frequency="0.04" /replace="t" variation 2646 /gene="IFNA1" /frequency="0.14" /replace="" variation 2666 /gene="IFNA1" /frequency="0.09" /replace="t" variation 2818 /gene="IFNA1" /frequency="0.11" /replace="t" variation 2858 /gene="IFNA1" /frequency="0.01" /replace="g" variation 2860 /gene="IFNA1" /frequency="0.06" /replace="g" variation 2919 /frequency="0.01" /replace="a" variation 2978 /frequency="0.01" /replace="t" variation 3078 /frequency="0.01" /replace="g" variation 3139 /frequency="0.07" /replace="a" variation 3215 /frequency="0.01" /replace="a" repeat_region 3264..3535 /rpt_family="L2" /rpt_type=dispersed variation 3460 /frequency="0.01" /replace="a" repeat_region 3536..3899 /rpt_family="MaLR" /rpt_type=dispersed misc_feature 3560..3895 /note="Region not scanned for variation" repeat_region 3900..4083 /rpt_family="L2" /rpt_type=dispersed variation 4001 /frequency="0.36" /replace="g" variation 4062 /frequency="0.36" /replace="g" variation 4224 /frequency="0.01" /replace="g" variation 4275 /frequency="0.36" /replace="a" variation 4286 /frequency="0.01" /replace="g" variation 4325 /frequency="0.01" /replace="t" misc_feature 4461..4790 /note="Region not scanned for variation" ORIGIN 1 gaagcctgac tggccagtgt ctcaaagtca cagatgatga cctgatccct caggaacaga 61 tggtgtttca gctttgtggg agtgactgtc aaggtatgga gcacttaggt ggtctttgaa 121 acctgtcagg tttcacatct ctgctttgag tgaaaagctc atcacccaca gtagtgagga 181 atgtgcctat acttgctggg gctgatctgt tgaaacttta tgtgtagaca atggaaacat 241 ccaggagcat ttctgctttc atgtagcctc ttaataattg atgtccctga agtcctgtgt 301 cctcagggac agttcctctg attcctggat tgtaccagct ttcatgatgt taaatctaat 361 ctgtaaaact ctgagcatta atctccatga aaataagacc ttgttctttc tcatttaaat 421 gccccttttt tttcttgtct aatattctga gtaggatttc cagtactgtg ttgaaagaag 481 tagtgagagt gggcatcctt atcttataat aaatctcaga aaaaagattc caacatttca 541 ccactgacta tagtgttagc taatggctta tcttatagct aataaggaat gtgtctcttt 601 attctgaggt atattcttta tatacctaat ttgttataaa ttgtattaga gatggatttt 661 aaattttgtc aaaataattt taggcatgca taaaaatagt tatgattttt aatcttttat 721 tgtgtaaata aggagtatgg catttattga ttccaacata ttaaaatatt cttgcatccc 781 aggaataaat caagcttgat cataataaat gatcctttta tagtgctttt gaatttcatt 841 tgcaactact ttgtggatga ttttgcatct gtgttcatca ggaatattgg ctgtaatttt 901 tttttttctt gtaatgtcca tctctggctt aggtatcaag gtaatgctgg cttcataaaa 961 tgagtttggg agtattcctc cttaattttt tcaaagattt ggttctgttt aaatgtttgg 1021 tgaaattcag gagtaatcag atctaaaaaa acgtaagaac actaaaaata aatgataaaa 1081 atattttaaa gttttaagtg tttatcactt tcaaataatt tttaagtatt cattacttag 1141 aaaatgttta tctataaaca ttagaaaatg tttataattt gttaatttgc ttatgtaatt 1201 tgatacacta caatttattt gtttgtttgt ttgttttttg aaacagagtc tcactctgac 1261 acccaggctg gagtgcagtg gcacaatctc ggctcactgc aacctccacc tcatgagttc 1321 aaggaattcc ctgcctcggc ctcctgagta gctgggatta caggtgcaca caaccatgcc 1381 tagctaattt tttttttgtt ttttttttgt ttttttcgtt gagatggggt ttcaccgtct 1441 tggccaggct ggtcttgaac tcctgacctc gtgatccacc cacctcggac tcccaaagtg 1501 ctgggattac aggcgtgagc cacctcgcca ggcctacagt acaatttata tcagtaaata 1561 aattacattg aagtccataa gcaaatttag ttataaagtt aagaaaaatt tgaatagatt 1621 ttaaatttaa cttttagctt aaatttttca tttggttatt tttaaacctg cattgaatac 1681 aaagattaaa ctttgtactt tttgattata gagatataca tatagtatat aaatagatac 1741 atattgtatc tgtgttatta aattttcacg gtgggttcaa ttaggaaaaa gatatctaaa 1801 aagtctctgg gaacaagatg gggaagacaa taatgaaaaa caaaacattt gagaaacacg 1861 gctctaaact catgtaaaga gtgcatgaag gaaagcaaaa acagaaatgg aaagtggccc 1921 agaagcatta agaaagtgga aatcagtatg ttccctattt aaggcatttg caggaagcaa 1981 ggccttcaga gaacctagag cccaaggttc agagtcaccc atctcagcaa gcccagaagt 2041 atctgcaata tctacgatgg cctcgccctt tgctttactg atggtcctgg tggtgctcag 2101 ctgcaagtca agctgctctc tgggctgtga tctccctgag acccacagcc tggataacag 2161 gaggaccttg atgctcctgg cacaaatgag cagaatctct ccttcctcct gtctgatgga 2221 cagacatgac tttggatttc cccaggagga gtttgatggc aaccagttcc agaaggctcc 2281 agccatctct gtcctccatg agctgatcca gcagatcttc aacctcttta ccacaaaaga 2341 ttcatctgct gcttgggatg aggacctcct agacaaattc tgcaccgaac tctaccagca 2401 gctgaatgac ttggaagcct gtgtgatgca ggaggagagg gtgggagaaa ctcccctgat 2461 gaatgcggac tccatcttgg ctgtgaagaa atacttccga agaatcactc tctatctgac 2521 agagaagaaa tacagccctt gtgcctggga ggttgtcaga gcagaaatca tgagatccct 2581 ctctttatca acaaacttgc aagaaagatt aaggaggaag gaataacatc tggtccaaca 2641 tgaaaacaat tcttattgac tcatacacca ggtcacgctt tcatgaattc tgtcatttca 2701 aagactctca cccctgctat aactatgacc atgctgataa actgatttat ctatttaaat 2761 atttatttaa ctattcataa gatttaaatt atttttgttc atataacgtc atgtgcacct 2821 ttacactgtg gttagtgtaa taaaacatgt tccttatatt tactcaatcc attattttgt 2881 gttgttcatt aaacttttac tataggaact tcctgtatgt gttcattctt taatatgaaa 2941 ttcctagcct gactgtgcaa cctgattaga gaataaaggg tatattttat ttgcttatca 3001 ttattatatg taagatgtaa gtaaaaatga cctttctcta aaccaggttg tatgttgtac 3061 tcaagatata aagctgaata caataaatct acttcctact ctcttgcata tttggttttt 3121 gtatggaata aaactaaaga tggtaatcat acttaatatc agttatccta aatactatga 3181 gaagaaggag caactaatga tttctctcag cagcgggtaa actgagacag gtgaggaaat 3241 aaaaataaac agatatcctc aaaagttgac tggtaaacat ctagtagaaa atgtctattg 3301 ccagttggat atatgagttt gcaacttaca aggaatgcag ttgctggggg ttcatacatg 3361 gcaagcaaaa tcccagaaat ggaagtgctc atgtgtggag agagtgtaga cagagaaaag 3421 gacttaagca ggattttgag gaccttccac ctttaaagtg agggaagaga agagacacag 3481 aggaaccaga ggtggtgtcc cttatattag actaacaaca agagagattg gtgattaata 3541 tggtttggat ctgtgtccct gcccaaatct catgtggaat tgcaatcccc agtgttggag 3601 gtagggcctg gtgcggggtg actgggtcat ggctatttct catggtttaa caccatcccc 3661 tttggtgctg tcatggtgat agtgagccct cctgagatct agttgtttaa aagtgtgtgg 3721 cacctacccc tacccttcct cttgctctcg ctttaccttc ctctctgaag cctccccaga 3781 agcagatgct gccatgcttc ctgtatagcc tgcagaattg tgaggcaatt aaacctcttt 3841 tcttataatt tacccagtct cagctatttc tttgtagcac tgcaacaatg gactgatact 3901 gtgataaaag tgtatttaag aagataaatg tgcggggaag atgaatcagt agattttccc 3961 aagatacgga ttaaaactgc ccagtaattg ggaaatagat agccttggca atcttagtga 4021 gagagctggt ttggtggaat taataagtag aagtcatact gcagtaggat ccaagtaaga 4081 gaagttagtg actctgaagt gaagatggaa atagaatgga atttgaaaag aatgtggatt 4141 attgtttttg tacacagttt ttttttcttt tttgcagtat attttttccg gatagatttc 4201 atgtaactga tgtactggca accatattga tatgtttagt atatttatgt taaattaaaa 4261 tatttaatta caatgataat ttttcatttt ttaaataaat actactttga atatcagtaa 4321 gctgccttaa ttctgtaggt gggaatagaa aactaattca atccgtcatc acaatattta 4381 attaatactg ataatataat gattcctgga cctactggct ttattaatta agttacttaa 4441 cttgcgtaat tgtaacactg gtttactata attttacttc agcttttaac acattttatt 4501 ttctggtaga gctcatatat tacttcttgg caatttttcc tgatgttatg aatattacaa 4561 tcttatgcca atccaaaaat aactaaatta ccatcaacat aaagactgaa aacttccttc 4621 acaaattaat aatgaaaagg gaatcaacga atctctgtct caatacttaa gataaagaaa 4681 aagttggtca taaccagctg aaaatacagt atgaaccatg gaaattcaga gagcaagaaa 4741 gagttgtgta gaattcacaa ggaaaaaaaa agatttaaca attataactg g //