LOCUS HSPB1 5687 bp DNA linear PRI 27-JAN-2006 DEFINITION Homo sapiens heat shock 27kDa protein 1 (HSPB1) gene, complete cds. ACCESSION HSPB1 VERSION tmp KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5687) AUTHORS Livingston,R.J., Rieder,M.J., Shaffer,T., Bertucci,C., Baier,C.N., Rajkumar,N., Willa,H.T.., Daniels,M., Downing,T.K., Stanaway,I.B., Nguyen,C.P., Gildersleeve,H., Cassidy,C.M., Johnson,E.J., Swanson,J.E., McFarland,I., Yool,B., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (27-JAN-2006) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..5687 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" misc_feature 1..1651 /note="Region not scanned for variation" repeat_region 1..25 /rpt_family="MER2_type" /rpt_type=dispersed repeat_region 26..334 /rpt_family="Alu" /rpt_type=dispersed repeat_region 335..365 /rpt_family="MER2_type" /rpt_type=dispersed repeat_region 366..669 /rpt_family="Alu" /rpt_type=dispersed repeat_region 670..747 /rpt_family="MER2_type" /rpt_type=dispersed repeat_region 753..898 /rpt_family="MIR" /rpt_type=dispersed repeat_region 909..1217 /rpt_family="Alu" /rpt_type=dispersed repeat_region 1226..1237 /rpt_family="Alu" /rpt_type=dispersed repeat_region 1238..1547 /rpt_family="Alu" /rpt_type=dispersed repeat_region 1548..1651 /rpt_family="Alu" /rpt_type=dispersed repeat_region 1691..1773 /rpt_family="MIR" /rpt_type=dispersed variation 1754 /frequency="0.02" /replace="T" gene 2001..3694 /gene="HSPB1" mRNA join(2001..2471,3197..3260,3383..3694) /gene="HSPB1" /product="HSPB1" variation 2052 /gene="HSPB1" /frequency="0.01" /replace="T" variation 2062 /gene="HSPB1" /frequency="0.04" /replace="T" CDS join(2108..2471,3197..3260,3383..3572) /gene="HSPB1" /codon_start=1 /product="heat shock 27kDa protein 1" /translation="MTERRVPFSLLRGPSWDPFRDWYPHSRLFDQAFGLPRLPEEWSQ WLGGSSWPGYVRPLPPAAIESPAVAAPAYSRALSRQLSSGVSEIRHTADRWRVSLDVN HFAPDELTVKTKDGVVEITGKHEERQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPE GTLTVEAPMPKLATQSNEITIPVTFESRAQLGGPEAAKSDETAAK" variation 2505 /gene="HSPB1" /frequency="0.02" /replace="C" variation 2553 /gene="HSPB1" /frequency="0.08" /replace="A" repeat_region 2663..2748 /rpt_family="Alu" /rpt_type=dispersed variation 2847..2848 /gene="HSPB1" /frequency="0.20" /replace="" variation 2935 /gene="HSPB1" /frequency="0.01" /replace="T" variation 2940 /gene="HSPB1" /frequency="0.01" /replace="T" variation 3137 /gene="HSPB1" /frequency="0.01" /replace="T" variation 3282..3285 /gene="HSPB1" /frequency="0.99" /replace="" variation 3324 /gene="HSPB1" /frequency="0.05" /replace="A" variation 3527 /gene="HSPB1" /frequency="0.01" /replace="C" variation 3712 /frequency="0.01" /replace="A" variation 3794 /frequency="0.16" /replace="G" variation 3822 /frequency="0.01" /replace="G" variation 3848 /frequency="0.02" /replace="C" repeat_region 3858..4147 /rpt_family="Alu" /rpt_type=dispersed variation 3886 /frequency="0.01" /replace="G" variation 3996 /frequency="0.01" /replace="A" variation 4066..4067 /frequency="0.73" /replace="" variation 4304 /frequency="0.01" /replace="T" variation 4407 /frequency="0.01" /replace="C" variation 4438 /frequency="0.01" /replace="T" variation 4648 /frequency="0.01" /replace="G" variation 4680..4681 /frequency="0.09" /replace="" variation 4722 /frequency="0.25" /replace="C" misc_feature 4745..5686 /note="Region not scanned for variation" repeat_region 4751..5049 /rpt_family="Alu" /rpt_type=dispersed repeat_region 5110..5240 /rpt_family="Alu" /rpt_type=dispersed repeat_region 5376..5664 /rpt_family="Alu" /rpt_type=dispersed BASE COUNT 1299 a 1645 c 1514 g 1229 t ORIGIN 1 attagtgttt ctaaagatag aagatggcca ggcgcggtgg ctcacgcctg taatcctagc 61 actttgggag gcccaggcgg gtggattact tgaggtcagg agttcaagac cagcctggcg 121 aacatggtga aaccccatct gtactaaaaa tacaaaaatt agccagtgtc gcggcacttg 181 cctgtagtcc cagctactca ggaggctgag gcagaagaat cacttgaacc tgggaggtag 241 aggttggagt gagcctagat caggccactg cactccagcc tgggcgacag agggagactc 301 catctcaaaa taaataaata aataaataaa taaaacatag aagatgtaca gtaaaaacac 361 ggtaattgtt tttgtttgtt tgttttgaga cagggtcttg ttctgtcatg cggactggag 421 tgcagtggca ccatcaggct cactgcagcc tcgacctcct tggctcaagt gctcctccca 481 cctcagcctc ctgagtatct gggactacag gtccacgcca ccatgcctgg ctaatttgtt 541 ctgaatttta gtagagatgg ggtctcactg tgttgcccag gcttgttcca gccttctggc 601 ttcaagtaat cctcccacat cagcctccca aagtgctaag attacagatg tcagccactg 661 cacccagcca gtaatataat tttatgggac caccttcata tttgctgtcc cttgctgact 721 tacacatctt tatgcaatgc atgactgtta ccatcattat catctctatt ttccagatgg 781 ggaaactgag gcacaaagaa tctaacttgc acaagttcat ctgcttagtg atggaacaaa 841 gatgtgaatt caggcagtct ggcttcaaag tccacacgcc taacaaccac accagattac 901 tagattgctt ttttcttttt tctttttttt tttttgagat ggagtctcac tctgtcaccc 961 aggctggagt acagtggtga gatctcggct cactgcaacc tctgccttct gggttcaagc 1021 aattctcctg cctcagcctc cccagcagct gcgattacag gcgcccgcca ccacacccag 1081 ctaatttttg tatttttagt agagatgggg tttcaccatg ttggccaggc tggtctcaaa 1141 ctcctgacct ctggtgatcc tcccacctcg gtctcccaaa gtgctgggat tacaggcgtg 1201 agccaccacg cccagcccag actgctttat ttttgtattt gtatttattc atttacttat 1261 tttgagacag ggttttgctc tgtagcccag gctgaagtgc agtggtgcaa tccagctcac 1321 cacagcctct actcaccggg gttcaaagga tcctcctgct tcagcctctg gagtagctgg 1381 ggccacaggc atgcaccacc atgcccagct aatttttaaa tattttttgg tagaagtagg 1441 gtctcactat gttgcccaga ctggtctcaa actcctagcc tcaagggacc cttctgcctt 1501 ggcctcccaa agtgctgaga ttacaggcat gagccatgca cccagcccct ttttaaaatt 1561 tttttgagag acaagacttt gatctgttgc ctaggctgga gtgcagtggt gagatcatag 1621 ctcactgcag cctcaactcc tgggctcaag caccagactc cttttatcac attctatctc 1681 acacgcgtgt ggttccaatc ctgcctctgc cacttctcag ttgtatgccc caacccaacc 1741 tgtctggctc tgtcctcctt aacagaagga cggccctggc cacgggccac agccagcaac 1801 gcttaagcac cagggccggc gagtgccctg ccgtggcacg gctccagcgt cgcgctctcg 1861 aattcatttg ctttccttaa cgagagaagg ttccagatga gggctgaacc ctcttcgccc 1921 cgcccacggc ccctgaacgc tgggggagga gtgcatgggg aggggcggcc ctcaaacggg 1981 tcattgccat taatagagac ctcaaacacc gcctgctaaa aatacccgac tggaggagca 2041 taaaagcgca gccgagccca gcgccccgca cttttctgag cagacgtcca gagcagagtc 2101 agccagcatg accgagcgcc gcgtcccctt ctcgctcctg cggggcccca gctgggaccc 2161 cttccgcgac tggtacccgc atagccgcct cttcgaccag gccttcgggc tgccccggct 2221 gccggaggag tggtcgcagt ggttaggcgg cagcagctgg ccaggctacg tgcgccccct 2281 gccccccgcc gccatcgaga gccccgcagt ggccgcgccc gcctacagcc gcgcgctcag 2341 ccggcaactc agcagcgggg tctcggagat ccggcacact gcggaccgct ggcgcgtgtc 2401 cctggatgtc aaccacttcg ccccggacga gctgacggtc aagaccaagg atggcgtggt 2461 ggagatcacc ggtgagcccc cctgctcctg caggggagag gaggaggcta gcagggcggg 2521 cagggccggg ggcgtgcggt tgaaacgggg gtcccggggg cctggggagt taaacgttgg 2581 cccagcaccg ggaaaaacag gactcctgat tcccttgctc aggaattggg agtgcgggtc 2641 gcttctaagg gcgctttctg ctctgtaatc ccagcgcttt gggaggccga gacgggagga 2701 tcgcttgagg ccaggagttc aagactagcc tgggcaacat agcgagacgc gcccccccgc 2761 cccgaccccg cgccattaca aaaaaaaagc aaacaaaaat ttttttaaag atcatcgatg 2821 aagagagaaa atgcgctttt ctacagagtc cccttcccac ccacagcccc atccccagat 2881 aagcggggag ttccctggcg cggtgccagt ttctagccgc tgagtgggcg tgtgcgcggc 2941 tccaagtgcg cctgcgtact gctcactccc cagctccgcg ccctgctccg ttcctcccaa 3001 aactctgaat cgaagaactt tccggaagtt tctgagagcc cagaccggcg ggcacgcccc 3061 catccccaac cccctctgtt aatccctacc agcctgcagt cctggctgct tccaagcagg 3121 aggtggggcc tctggcctag cggggccgaa aggcagtccc ctcccccgca gtctgatttc 3181 cctcttcccc ccaaaggcaa gcacgaggag cggcaggacg agcatggcta catctcccgg 3241 tgcttcacgc ggaaatacac gtgagtcctg gcgccaggtc ggggtgggtg ggtgggtggc 3301 gtgggggtgg ggtcagggaa gagggcacag ggacccaccc ggtgtgtaat gtaacgcttg 3361 cctttcctct ctgcacgtcc aggctgcccc ccggtgtgga ccccacccaa gtttcctcct 3421 ccctgtcccc tgagggcaca ctgaccgtgg aggcccccat gcccaagcta gccacgcagt 3481 ccaacgagat caccatccca gtcaccttcg agtcgcgggc ccagcttggg ggcccagaag 3541 ctgcaaaatc cgatgagact gccgccaagt aaagccttag cccggatgcc cacccctgct 3601 gccgccactg gctgtgcctc ccccgccacc tgtgtgttct tttgatacat ttatcttctg 3661 tttttctcaa ataaagttca aagcaaccac ctgtcactgg cccaggccct ggtgtttgtg 3721 gaaggaagcc tcaggcacct gccatttgct ggctttcagg agtcatcttt gctcaggccc 3781 gtgctgggcc atgtgggtac actggtgtag gttgctggac acaggctgac tcacatccat 3841 aaagacagag gtcttagggc cgggcgcagt ggctcatacc tacaatccca gcactttggg 3901 gggttgaagc aggaggagtg cttgaagcca agagttctag accagcctgg acaacatagt 3961 aagactgtct ctaaaaaata aaaattaggc agggtggtac tgcacgcctg tagtcccagc 4021 tactcaggag gctgaggcag gaggatcgct tgagcccagg agttgtgaag ggtacagtga 4081 gctaacatcg tgccattgca ctccagcctg ggcaacagaa caagatcctg tctcaaaaca 4141 accaaaagcc cagagagaaa gagtgagacc ccatctttaa aagaaaaaaa aaaaaggtca 4201 tgattgcaag gtcacgattg caattaaaac tgtaaggtgg ggaaggagga ggaaataaga 4261 gaagcacctg aggcttgagt tctcaggagc acctaggttg ggtcccaggt gaaggggcac 4321 agaggtaatt gcacctcaga gctgatggga ggattactat gtcaaaagct tggcatcggc 4381 ttcagcacac cccaaggaca ccacagtgga cctggcaagc tttgagatct ctgtcaccgc 4441 cacactccct gaggccaggg catccctgtt ggcagtcaca agggaactgg caagccgaaa 4501 tggggtgaga acggagcccg cagagtctcg gggtggggag attgggcaga gccctggcca 4561 accgacgggc tcagacctgt gctgctggct gggccagcag ctcttgttgc ctgtgtttat 4621 ttccagctgg cctccctcca ggtgtagaca ggcttccaag ggcccagttc ccctctctct 4681 tgtctgccct tgccctagct gccaccctct caccaggccc agggaaagtt gaggtagaaa 4741 gcagatgggg gaccaggcgc ggtggctcac acctataatc ccagcacttt gggaggccga 4801 ggcgggtgga ttacctgagg acaggagttc gagacagcct ggccaacagt gaaactccgt 4861 ctctactaaa agtacaaaaa ttagccgggc atggtgttgc atgcctgtaa ttccagctac 4921 tcaggaggct gaggcagggg aatcgcttga acccaggagg cagaagttgc agtgagccaa 4981 gatccatgcc actgccctcc agcttggggg acaagagcaa aactccatct aaaaaaaaaa 5041 aacaaaaaac agatgggagc tttggagctc agtcccaagg tcctcaaata tttgagggac 5101 ccagagtctg aggctgtagc aagatactcc catgttcaag gcggagcatg cagtgagccg 5161 agatcgtgcc actgcactcc agcctgggcg acagaggaag actccgtctc agaagaaaaa 5221 aaaaaaaaaa aaaaaaaaaa aaaaaatact cccatgttct tttctcagcc cacagtctga 5281 ctttcccagg ttccctaaga agggtggcac cctgcaggcg agggcctgga gcatgtccac 5341 accaccccca atatcacccc ccaccacctt gctgcttttt tgagaccaag ttttgctctt 5401 gttgcccagg ctggagtgca atggcgtgat ctcggctcac tgcaacctcc gcctcccagg 5461 ttcaagcgat tctcctgcct cagcctccag agtagctggg attataggcg tgcgccaccc 5521 tacccggcta atttttgtat ttttagtaga gacagggttt ttctatgttg gtcaggtggg 5581 tctcgaactc ccaacctcag gtgatctgcc cgcctcagcc tcccaaagtg ctgggattac 5641 aggcgtgagc caccacgccc ggccccagct tcttttttag ggacagt //