Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000156 00000 ------------ - 0.03 0.00 0.00 0.00 0.00 0.01 + 0.97 1.00 1.00 1.00 1.00 0.99 0000 --- --- --- --- 000396 00000 ------------ A 0.90 0.88 0.95 1.00 1.00 0.96 G 0.10 0.12 0.05 0.00 0.00 0.04 0000 --- --- --- --- 001156 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001280 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 001497 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001519 00000 ------------ C 0.93 0.96 1.00 0.98 1.00 0.98 T 0.07 0.04 0.00 0.02 0.00 0.02 0000 --- --- --- --- 001659 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001874 00000 ------------ C 1.00 1.00 0.98 0.97 1.00 0.99 G 0.00 0.00 0.02 0.03 0.00 0.01 0000 --- --- --- --- 002065 00094 5' UTR C 1.00 1.00 1.00 0.98 0.90 0.97 G 0.00 0.00 0.00 0.02 0.10 0.03 0000 --- --- --- --- 002155 00184 NON-SYN C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0026 CAC TAC HIS(H) TYR(Y) 002257 00000 ------------ C 1.00 1.00 0.98 1.00 1.00 0.99 T 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 002283 00000 ------------ A 1.00 1.00 0.93 0.98 1.00 0.98 G 0.00 0.00 0.07 0.02 0.00 0.02 0000 --- --- --- --- 002401 00000 ------------ C 1.00 1.00 0.98 1.00 1.00 0.99 T 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 002416 00000 ------------ G 0.83 0.88 0.95 1.00 1.00 0.95 C 0.17 0.12 0.05 0.00 0.00 0.05 0000 --- --- --- --- 002923 00000 ------------ T 0.96 1.00 1.00 1.00 1.00 0.99 G 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 002958 00000 ------------ A 0.88 0.88 0.95 1.00 1.00 0.96 T 0.12 0.12 0.05 0.00 0.00 0.04 0000 --- --- --- --- 003111 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 003114 00000 ------------ C 1.00 1.00 0.95 0.98 1.00 0.98 A 0.00 0.00 0.05 0.02 0.00 0.02 0000 --- --- --- --- 003410 00000 ------------ - 0.36 0.42 0.48 0.34 0.79 0.50 + 0.64 0.58 0.52 0.66 0.21 0.50 0000 --- --- --- --- 003847 00000 ------------ C 0.71 0.79 1.00 0.98 1.00 0.93 T 0.29 0.21 0.00 0.02 0.00 0.07 0000 --- --- --- --- 004248 00000 ------------ G 0.63 0.71 1.00 0.98 1.00 0.90 A 0.37 0.29 0.00 0.02 0.00 0.10 0000 --- --- --- --- 004259 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 004798 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 005006 00000 ------------ G 0.91 1.00 1.00 1.00 1.00 0.99 C 0.09 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 005214 00000 ------------ T 1.00 1.00 0.95 1.00 1.00 0.99 G 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 005859 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 005868 00000 ------------ - 0.00 0.00 0.00 0.00 0.04 0.01 + 1.00 1.00 1.00 1.00 0.96 0.99 0000 --- --- --- --- 005947 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 005994 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 006081 00000 ------------ C 0.70 0.71 0.48 0.36 0.80 0.60 T 0.30 0.29 0.52 0.64 0.20 0.40 0000 --- --- --- --- 006681 00000 ------------ G 0.88 0.88 0.95 1.00 1.00 0.96 A 0.12 0.12 0.05 0.00 0.00 0.04 0000 --- --- --- --- 006820 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 007639 00000 ------------ C 0.71 0.73 0.48 0.38 0.79 0.60 A 0.29 0.27 0.52 0.62 0.21 0.40 0000 --- --- --- --- 007682 00000 ------------ T 0.89 0.88 0.95 1.00 1.00 0.96 C 0.11 0.12 0.05 0.00 0.00 0.04 0000 --- --- --- --- 008504 00000 ------------ - 1.00 1.00 1.00 1.00 0.98 0.99 + 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 008512 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 C 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 008523 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 010294 00882 SYNON G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0258 CAG CAA GLN(Q) GLN(Q) 010409 00000 ------------ - 1.00 1.00 0.98 1.00 1.00 0.99 + 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 010496 00000 ------------ C 0.86 0.88 0.95 1.00 1.00 0.95 T 0.14 0.12 0.05 0.00 0.00 0.05 0000 --- --- --- --- 010767 01056 SYNON A 0.65 0.71 0.80 0.75 0.27 0.62 G 0.35 0.29 0.20 0.25 0.73 0.38 0316 AAA AAG LYS(K) LYS(K) 010836 00000 ------------ C 1.00 0.92 1.00 1.00 1.00 0.99 T 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 011887 00000 ------------ G 1.00 1.00 0.95 1.00 1.00 0.99 A 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 012392 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 012599 00000 ------------ G 1.00 0.95 1.00 1.00 1.00 0.99 C 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 012666 00000 ------------ - 0.15 0.09 0.05 0.00 0.00 0.04 + 0.85 0.91 0.95 1.00 1.00 0.96 0000 --- --- --- --- 012672 00000 ------------ A 0.94 1.00 1.00 1.00 1.00 0.99 G 0.06 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 013067 00000 ------------ A 0.85 0.82 0.53 0.32 0.78 0.63 C 0.15 0.18 0.47 0.68 0.22 0.37 0000 --- --- --- --- 013371 00000 ------------ G 1.00 0.95 1.00 1.00 1.00 0.99 A 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 013405 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 013665 00000 ------------ A 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 015932 00000 ------------ G 0.68 0.58 0.55 0.70 0.18 0.52 A 0.32 0.42 0.45 0.30 0.82 0.48 0000 --- --- --- --- 016012 00000 ------------ C 0.85 0.83 0.52 0.36 0.78 0.64 T 0.15 0.17 0.48 0.64 0.22 0.36 0000 --- --- --- --- 016853 00000 ------------ G 1.00 0.96 0.98 0.93 0.79 0.92 A 0.00 0.04 0.02 0.07 0.21 0.08 0000 --- --- --- --- 016978 00000 ------------ T 0.82 0.86 0.95 1.00 1.00 0.95 G 0.18 0.14 0.05 0.00 0.00 0.05 0000 --- --- --- --- 017143 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 017202 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 017806 00000 ------------ T 0.87 0.88 0.95 1.00 1.00 0.95 G 0.13 0.12 0.05 0.00 0.00 0.05 0000 --- --- --- --- 017888 00000 ------------ A 0.83 0.83 0.52 0.36 0.77 0.63 G 0.17 0.17 0.48 0.64 0.23 0.37 0000 --- --- --- --- 017972 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 018267 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 018321 00000 ------------ C 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 018383 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 A 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 018786 01545 SYNON A 1.00 0.92 1.00 1.00 1.00 0.99 G 0.00 0.08 0.00 0.00 0.00 0.01 0479 CAA CAG GLN(Q) GLN(Q) 019681 00000 ------------ A 0.92 0.86 0.97 1.00 1.00 0.96 C 0.08 0.14 0.03 0.00 0.00 0.04 0000 --- --- --- --- 020297 00000 ------------ C 1.00 1.00 0.95 1.00 1.00 0.99 T 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 020936 02041 SYNON T 0.83 0.83 0.52 0.38 0.79 0.64 C 0.17 0.17 0.48 0.62 0.21 0.36 0645 TTG CTG LEU(L) LEU(L) 021249 00000 ------------ - 0.97 0.91 1.00 1.00 1.00 0.98 + 0.03 0.09 0.00 0.00 0.00 0.02 0000 --- --- --- --- 021665 02431 3' UTR A 1.00 1.00 0.95 0.93 1.00 0.97 G 0.00 0.00 0.05 0.07 0.00 0.03 0000 --- --- --- --- 021999 02765 3' UTR G 0.87 0.88 0.95 1.00 1.00 0.95 C 0.13 0.12 0.05 0.00 0.00 0.05 0000 --- --- --- --- 022002 02768 3' UTR T 0.70 0.75 1.00 0.98 1.00 0.91 C 0.30 0.25 0.00 0.02 0.00 0.09 0000 --- --- --- --- 022017 02783 3' UTR C 0.93 1.00 1.00 1.00 1.00 0.99 T 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 022350 00000 ------------ C 0.97 0.96 1.00 1.00 1.00 0.99 T 0.03 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 022369 00000 ------------ - 0.33 0.25 0.00 0.02 0.00 0.09 + 0.67 0.75 1.00 0.98 1.00 0.91 0000 --- --- --- --- 022373 00000 ------------ T 0.91 0.79 1.00 1.00 1.00 0.96 C 0.09 0.21 0.00 0.00 0.00 0.04 0000 --- --- --- --- 022930 00000 ------------ C 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 023309 00000 ------------ C 0.83 0.83 0.52 0.36 0.80 0.64 T 0.17 0.17 0.48 0.64 0.20 0.36 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 000156: GTTT 003410: TCT 005868: G 008504: AG 010409: AGAGAGAGGTGAGTTAC 012666: TA 021249: GC 022369: GTTTTTAGATCTCTAACATGAAA