HSPA1L Color FASTA

The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.

*Display courtesy of GeneSNPs

GTTCCCTGCT CTCTGTCGGC TCCGCTCTGA GATTGGGGGC TGGAAACGGA 50 ACACTGGATC CGCGAGAAGA GCTCGGTCCT TCCGGACGCC GGAAACTCGA 100 | var(93):[G:0.03] CGCGCCGGTG CCTGCAGCCG CACAGGTTCG CTCTGGGAAG CCTTGGGACA 150 ACGGGAGTCA CTCTCGAAAA AGGTAGTGGA CTGTCGCAGC AGCTCCTCAG 200 | var(187):[T:0.01] GCTAGCCGTT ATCCGGACCG CTTGCCCCTG GGCTTTTATA AGTCGTCACG 250 GAGACCCGCC TTTTCCCTTC TGAGCCAATC ACCGAGCTCG ATGAGGCTGC 300 CAGGTCGGGA ATATTCCAGG GGTTTCGCCT CCCGTCCTGC CCCCCAGCCT 350 | var(322):[T:0.41] TCCTTGGACC AATCAGAGGC CAGAGTGCCG CCCCCTGCTC AGAACTCTCC 400 AGAGTCTTCT GGGATTCACT GGAGGGGACA GGGACCCTGA GAGGAAGGGG 450 GAGTGGCGGT GGGAAGGGTG TTGGTCTCCA TGGCGATGCT GACCGCCTGC 500 GCTTCAGCGC CTAATTGACA GGAAGGGTCG GCGCTGGGCT TTTAATTGTG 550 GGGGCTTGCT GGGCCTGCGC AGTTGTGGGC AGGGGGCTGG TGCGGGGAGC 600 | var(586):[T:0.01] | var(587):[T:0.03] GGGTTACGCG CGTCCAGGGG AGGGTGGGGG CGTTTGTGTT GACACCGCCC 650 GGCCACGTTA CAATGGAGAT ACTGTCTCTG ACCTCATGGG CCAGTTTGGA 700 | var(675):[C:0.01] AAAAGATTAC TGAGTTGGAG CCGTCTCAAA TTTGCAGGGA GGGACGGGGT 750 | Exon 1 | UTR GGGGGGTGGG GGGTGGGGGG ACCCCGGTTG TGCAGTTTGA TATTGAGGGA 800 | var(764):[:0.99] GCCCCCACCT ACTCGCTGGG GCTGCGTAAT CTGGACGTTT CCAAACTGAA 850 GCGAAGGCGT CGGGAGACTA GGTGAGCCAG TAGGGATCTG ATTGATTGTG 900 AACCTGAAAG GCTCAGTAGG TCCTTGTTTG GGAAAGTACT GGAAAGTTCC 950 | var(915):[G:0.01] | var(920):[T:0.01] CTAGTTGGTT TAAGCCTGAG GTATGTGGGC GTTGGCTGAT CCGGGTAGGA 1000 | var(993):[T:0.03] GGAGCACTTG GGGAAAGCTA AGATGGCTTC AGATTGATTG GTCGGAGCAG 1050 CCAGAATGGG GGAGGCGGGG GAAGGGAGTG CGGCCTGTCG GGGAAATGGG 1100 | var(1086):[G:0.02] GAGGCGGGGA AGGCGGGGTA AGGGGGAGGC GGGGTAACTG GGAAGCGGGG 1150 | var(1110):[:0.01] GAAAGGGAGT GCGGCCTAGG AATCTGCGGT GTGGAGAGGG ATAGACACTA 1200 AACCCTTTAT TTTATTTTTA TTTATTTATT TTTAATTTTT TTTTTTTTTT 1250 | var(1220):[T:0.02] | REPEAT TGAGACGGAG TCTCGCTCTG TCGCCCAGGG TGGAGTGCAG TGGCACGATC 1300 TTGGCTCACT GCAAGCTCTG CCTCCCGAGT TCAGGCCATT CTCCTGCCTC 1350 AGCCTTCCGA GTAGCAGGGA CTGCAGGCGC CCGCCACCGC GCCCGGCTAA 1400 | var(1357):[A:0.01] TTGCTCCACC TCCCGGGTTC AAGCTATTCT CCTGCCTCAG CCATCCGAGT 1450 | REPEAT AGCTGGAACT ACTGGCGCCC GCCACCACGC CCAGCTAATT TTTTCTATTT 1500 TTTAGTAGAG ACGAGGTTTC ACCGTGTTAG CCAGGATGGT AGCCAGGATG 1550 GTCTCGTTCT CCTGACCCCG TGATCCGCCC GCCTCGGCCT CTCAAAGTGC 1600 | var(1580):[T:0.02] TGGGATTACA GGCGTGAGCC ACCGCCCCCC GCCCTTAAAC CCTTTATTGA 1650 TCAGTTATTG GCTCCAGAAA ACAGGAGTTT TATTTAGGAG AAGGATACAG 1700 ATACTGTCTG GAGTGCCATG TCGTTTGAGA AAACTGGAAG GCTTGTGGTT 1750 | var(1704):[T:0.01] TTCTAGCAGT CATCTTCAGC CTGACTGGAA TTTACTGCCG GTGAACCCCT 1800 | var(1789):[T:0.01] AATAGAGAAT ATTATCCCAG GAAGGCAGCA GAACTCAAGT GTGGAGGCTG 1850 ATGTCTCTTG AAGAGACCAG AATGTACACT ACTCTTGGGT CATAAAGAGA 1900 CAGAATCCCA CAGTAAAATA TATAGGAACA GGACAGTAGA ATTAGGTCAC 1950 | var(1924):[G:0.01] TTGGGAAATT GAAAACAATA TACAGCTACT TGCTTCCCAA CTTCTTTGAG 2000 TAGCTGAGAA TACTTTTGTC TACCCTGTCC AAAAAGCAGT CTGCCATGAC 2050 | REPEAT AGTAGCGTCT CCATGTATTT GTATAGGCTT GCTCATAGCA ACATTATTCT 2100 GTAAATTCTG TAATCTGTAT CCATCGAGAG ATAGATAAGC AAAATGTATA 2150 | var(2139):[A:0.01] TAGGCCGGGT GCGGTGGTGG CTCATGCCTG CCATCCCAGA ACTTAGGGAG 2200 | REPEAT | var(2156):[T:0.02] | var(2175):[C:0.01] ACCGAGGCGG GCGGATCACT TAAGGTTAGG AGTTTGAGAC CATCCTGGTC 2250 AACATGGTGA AACTCTGTTT TTACTAAAAA TACAAAAATT ATCTGGGCGT 2300 GGCAGTGCAC GCCTGTAGTC CCAGCTCCTC GGGAGGCTGA GGCTGGAGAA 2350 TTAGCTTGAA CCCAGGAGGT GGAGGTTGCA GTGAGCCAAG ATCATGCCAC 2400 TGCACTCCAG CCTGGGTAAC AGAGTGAGAC TCTGTCTCAA AACAAAATCA 2450 | var(2404):[G:0.01] | var(2423):[:0.01] AAAACAGTGG TATATAAATA TGAATATTAC TCAGCCTTAG GAAGGAAATT 2500 | REPEAT GTGACATGTT ACAACATGGA TGAAACCTGT GCACATAAGC TAAGTGACAT 2550 AAGCAAAGTC ACAAAAGGAT AAATACTGTA TAATTCCACT TATATGAAGT 2600 TACAAGAGTA GTCAAATTCA TAGAGATAGA AAAAAGAGGT CGGGCGCCTT 2650 | REPEAT GGCTCAAGCC TATAATCCTA ACACTTGGTG ACTTGGAGGT GGGAGGAGGT 2700 | var(2652):[C:0.04] TTCCTTGAGC TCAGGAGTGA GAAACTAGCT TGGGCAACAG GGAGACCTGG 2750 TCTCTACAAA AAAATAAAAA ATTAGCTGGG TGTGGTGGCA TTCACCTGTG 2800 GTCCAAGCTA CTTGGGAGGC TGAGACAAAA GGATCCTATG AGCCTGGGAG 2850 GTCAAGACTG CAGTGAGCCA TGATTACACC ACTGCAGTGC AGCCTGCGTG 2900 ACAAAACGAG ACCCTGTCTC TAAAAAATGA GAAAAAAAAA TGGTTGTTAC 2950 | REPEAT | var(2943):[T:0.09] CAGGCGATAA AGGGAGGGGA AAACGGGAGT TACTTAATGA GTATACAGTT 3000 | NOT SCANNED TCAGTTTTGC GAGATGAACA GAATTCTGGA AATTGGTTGA ACACCGCTGT 3050 GATTGAACTC ACTACCAAAC TCTACACTTA AAAATGGTTA AGATGGTACA 3100 ATTTGTATGT ATTTTACCAC AATAAAAAAT AAAAAATAGG CTGGGCGAGA 3150 | REPEAT TGTTCACTCC TGTAATCCCA GTACTTGGGG AGGCTGGGGC TGAAGGATCG 3200 TTTGAGCCCT GAAGGAGTTT GAGACCAGCC TGAGCAACAT AAGGAGACCC 3250 CATCTGTACA CAAAATTAAA ACATTAGCCA GGCAGAGAGC TGGTCACGGT 3300 | REPEAT GGCTCACGTA TGTAATCCCA GCACTTTGGG AGGCCGAGGC GGGCGGATCA 3350 CCTGAGGTCA GGAGTTTGAG ACCAGCCTGG CCAACATAGT GAAACCGTGA 3400 AACCCCATCT CTACTAAAAA TACAAAAATT AGCTGGGCGT GGTGGTGCCC 3450 TCATAATCCC AGCCACTCGG GAGGCTGAGA CAGGAGAATC GCTTGAACTC 3500 AGGAGGTGGA GGTTGCAGTG AGCCTAGATC ACACCACTGC AGTCCAAAGC 3550 AAGACTCCGT CTCAAAAAAA AAAAAAATTA GCCGGGCATG TTGTCTCCAG 3600 | REPEAT TTATTCTGGA GGCTAAGGCA GGAAGATTGC TGGAGCCTAG GAGATCAAAG 3650 CTGCAGTGAG CTATGACTGC GCCTCTGCAC TCCAACCTGG GTGACAGAGG 3700 AAGACCCTGT CTCAAAAAAA TAAATAACAT TGAAAAGCAC TCTCCCAAAA 3750 CAGTATCTTA TTCTTTCTCC ATAGGCCTCA GAGAACCATG GCTACTGCCA 3800 | Exon 2 | UTR M A T A 4 AGGGAATCGC CATAGGCATC GACCTGGGCA CCACCTACTC CTGTGTGGGG 3850 | var(3809):[C:0.02] K G I A I G I D L G T T Y S C V G 21 GTGTTCCAGC ACGGCAAGGT GGAGATCATC GCCAACGACC AGGGCAACCG 3900 V F Q H G K V E I I A N D Q G N R 38 CACCACCCCC AGCTACGTGG CCTTCACAGA CACCGAGCGG CTCATTGGGG 3950 T T P S Y V A F T D T E R L I G 54 ATGCGGCCAA GAACCAGGTA GCAATGAATC CCCAGAACAC TGTTTTTGAT 4000 D A A K N Q V A M N P Q N T V F D 71 GCTAAACGTC TGATCGGCAG GAAATTTAAT GATCCTGTTG TACAAGCAGA 4050 A K R L I G R K F N D P V V Q A D 88 TATGAAACTT TGGCCTTTTC AAGTGATTAA TGAAGGAGGC AAGCCCAAAG 4100 M K L W P F Q V I N E G G K P K 104 TCCTTGTGTC CTACAAAGGG GAGAATAAAG CTTTCTACCC TGAGGAAATC 4150 V L V S Y K G E N K A F Y P E E I 121 TCTTCGATGG TATTGACTAA GTTGAAGGAG ACTGCTGAGG CCTTTTTGGG 4200 S S M V L T K L K E T A E A F L G 138 CCACCCTGTC ACCAATGCAG TGATTACCGT GCCAGCCTAT TTCAATGACT 4250 H P V T N A V I T V P A Y F N D 154 CTCAACGTCA GGCTACTAAG GATGCAGGTG TGATTGCTGG ACTTAATGTG 4300 S Q R Q A T K D A G V I A G L N V 171 CTAAGAATCA TCAATGAGCC CACGGCTGCT GCCATTGCCT ATGGTTTAGA 4350 | var(4324):[A:0.01] L R I I N E P T A A A I A Y G L D 188 TAAAGGAGGT CAAGGAGAAC GACATGTCCT GATTTTTGAT CTGGGTGGAG 4400 K G G Q G E R H V L I F D L G G 204 GCACATTTGA TGTGTCAATT CTGACCATAG ATGATGGGAT TTTTGAGGTA 4450 G T F D V S I L T I D D G I F E V 221 AAGGCCACTG CTGGGGACAC TCACCTGGGT GGGGAGGACT TTGACAACAG 4500 K A T A G D T H L G G E D F D N R 238 GCTTGTGAGC CACTTCGTGG AGGAGTTCAA GAGGAAACAC AAAAAGGACA 4550 L V S H F V E E F K R K H K K D 254 TCAGCCAGAA CAAGCGAGCC GTGAGGCGGC TGCGCACCGC CTGCGAGAGG 4600 | var(4589):[A:0.01] I S Q N K R A V R R L R T A C E R 271 GCCAAGAGGA CCCTGTCGTC CAGCACCCAG GCCAACCTAG AAATTGATTC 4650 A K R T L S S S T Q A N L E I D S 288 ACTTTATGAA GGCATTGACT TCTATACATC CATCACCAGA GCTCGATTTG 4700 | var(4668):[G:0.01] L Y E G I D F Y T S I T R A R F 304 AAGAGTTGTG TGCAGACCTG TTTAGGGGTA CCCTGGAGCC TGTAGAAAAA 4750 | var(4706):[C:0.04] E E L C A D L F R G T L E P V E K 321 GCGCTTCGGG ATGCCAAGAT GGATAAGGCT AAAATCCATG ACATTGTTTT 4800 A L R D A K M D K A K I H D I V L 338 AGTAGGGGGC TCCACCCGCA TCCCCAAGGT GCAGCGGCTG CTTCAGGACT 4850 V G G S T R I P K V Q R L L Q D 354 ACTTCAATGG ACGTGATCTC AACAAGAGCA TCAACCCTGA TGAGGCCGTA 4900 Y F N G R D L N K S I N P D E A V 371 GCATATGGGG CTGCGGTACA AGCAGCCATC CTGATGGGGG ACAAGTCTGA 4950 A Y G A A V Q A A I L M G D K S E 388 GAAGGTACAG GACCTGCTGC TGCTGGACGT GGCTCCCCTG TCCCTGGGGC 5000 K V Q D L L L L D V A P L S L G 404 TGGAGACGGC TGGGGGCGTG ATGACTGCCC TGATAAAGCG CAACTCCACC 5050 | var(5008):[A:0.13] L E T A G G V M T A L I K R N S T 421 ATCCCCACCA AGCAGACACA GATTTTCACC ACCTACTCTG ACAACCAACC 5100 I P T K Q T Q I F T T Y S D N Q P 438 CGGGGTGCTG ATCCAGGTGT ATGAGGGCGA GAGGGCCATG ACAAAGGACA 5150 G V L I Q V Y E G E R A M T K D 454 ACAACCTGCT GGGGCGGTTT GACCTGACTG GAATCCCTCC AGCACCCAGG 5200 N N L L G R F D L T G I P P A P R 471 GGAGTTCCTC AGATCGAGGT GACGTTTGAC ATTGATGCCA ATGGTATTCT 5250 | var(5215):[T:0.02] | var(5223):[T:0.02] | var(5230):[T:0.01] G V P Q I E V T F D I D A N G I L 488 CAATGTCACA GCCATGGACA AGAGCACCGG CAAGGTGAAC AAGATCACCA 5300 | var(5265):[C:0.15] N V T A M D K S T G K V N K I T 504 TCACCAATGA CAAGGGCCGC CTGAGCAAGG AGGAGATTGA GCGCATGGTT 5350 I T N D K G R L S K E E I E R M V 521 CTGGATGCTG AGAAATATAA AGCTGAAGAT GAGGTCCAGA GGGAGAAAAT 5400 L D A E K Y K A E D E V Q R E K I 538 TGCTGCAAAG AATGCCTTAG AATCCTATGC TTTTAACATG AAGAGTGTTG 5450 A A K N A L E S Y A F N M K S V 554 TGAGTGATGA AGGTTTGAAG GGCAAGATTA GTGAGTCTGA TAAAAATAAA 5500 | var(5460):[C:0.03] V S D E G L K G K I S E S D K N K 571 ATATTGGATA AATGCAACGA GCTCCTTTCG TGGCTGGAGG TCAATCAACT 5550 I L D K C N E L L S W L E V N Q L 588 GGCAGAGAAA GATGAGTTTG ATCATAAGAG AAAGGAATTG GAGCAGATGT 5600 | var(5591):[A:0.23] A E K D E F D H K R K E L E Q M 604 GTAACCCTAT CATCACAAAA CTCTACCAAG GAGGATGCAC TGGGCCTGCC 5650 C N P I I T K L Y Q G G C T G P A 621 TGCGGAACAG GGTATGTGCC TGGAAGGCCT GCCACAGGCC CCACAATTGA 5700 C G T G Y V P G R P A T G P T I E 638 AGAAGTAGAT TAATTCTTTT TAGAACTGAA GCATCCTAGG ATGCCTCTAC 5750 | UTR E V D 641 ATGTATTTCA TTCCCCTCAT CTTCAAACAT CATTATTATT CTTGACCAGA 5800 | var(5766):[:0.12] CCTGAATCTA AGTTACCATC CCTTGGAAAT TCTGGAGAAG GAGTCTCATG 5850 | var(5850):[A:0.03] CACCACCTAT CACACTCCCT CACATCCTGT TTCTGACTTT GGAATGGACT 5900 | var(5896):[A:0.03] CAGGAAAACT AGGCCCCTCT TTAAACCGTG TGATGTATTT GAATGTCTGT 5950 TATTTCCAGC CACCCTAACA TTCTTCTTCC TGTGTGGATG CTTATTTGTC 6000 AATCAGTAAA TTTGTTCGTA AAGAAAATTA CTTCTGGTAT TTAGGCTGTG 6050 AATGTACCTT GAAGGGGAGA GTTCATGGAG AGAGCATGTG TTCTCTGATT 6100 GTGAGGTCAC TGTGAATGAT TAAATTGGTA AGGGTAAAGT ATTTGAATTT 6150 TCATGAACTC ATTTTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG 6200 TGTTTTGAGA GACAGTCTCG CCCTGTCACC CAGGCTGGAG TGCAGTGGCA 6250 | REPEAT CAATCTCAGC TTACTGCAAG CTCTGCCTCC TGGGTTCACG CCATTCTCCT 6300 GCCTCAGCCT CCCGAGTAGC TGGGACTGCA GGTGCCCCCC ACCATGCCCG 6350 GCTAATTTTT TGTATTGTTT TAGTAGAGAC GGGGTTTCAC TGTGTTAGCC 6400 AGGATGGTCT CGATCTCCTG ACCTCGTGAT CCGCCCGCCT CGGCCTCCCA 6450 AAGTGCTGGG ATTACAGGCG TGAGCCACCG TGCCCGGCCC ATGAACTCAT 6500 TGTTTCAATC AGCCACATAA TTTTTGATCC TCAGACACCT TTAGCACAGA 6550 TGGAACAGAT GGCAAACTAT AACTGCTTTT AATCAGTTAC AAGCTGGTTT 6600 TGGAGTTTAG GACTCAACTG GGGGTGGAGG GACAAATCCT GCTTGATGTC 6650 CTGATGTCAC TTATAGGTAA GGTCCAGGAG ATTCAGCATC TATGCACTCA 6700 CAGAGTTCAT TGTTTACATC CATTACATGG AGAAAATATT TCTTTTCTTT 6750 | REPEAT TTTTTTTTTT TTGGAAACAG TTTCGCTCTT GTCGCCCAAG CTGGAGTGCA 6800 ATGGCACGAT CTCGGCTCAC TGCAAACTTT GCCTCCCAGA TTCAAGCGAT 6850 TCTCCTGCCT CAGCCTCATG AGTAGCTGGG ATTACAGGCG CTCACCACCA 6900 TGCCCGGCTA ATGTTTGTGT TTTTAGTAGA GACGGGATTT CACCATGTTG 6950 | var(6906):[A:0.01] | var(6933):[T:0.02] ACCAGGCTGT TCTGAACTCC TGACCTCAGG TGATCCACCC ACCTCAGCCT 7000 CCCAAAGTGC TGGAATTATA GGCGTGAGCC ACCGTGCCCA GCCCCAGAAA 7050 ATATTTCTAT AACAAACTCT TGACAAATAA GTATGTCTAT GCAAGATGAC 7100 AAATACAAGT TTTATGAAGT CTCAGTCCAT GAAAAAATAT TTTTACCAGC 7150 | REPEAT TGGGCACAGT GGCTCACGCC TGTAATCCCA GCACTTTGGG AGGCCGAGGC 7200 | var(7195):[T:0.01] GGGCGGATCA TGAGGTCAAG AGATTGAGAC CATCCTGCCC AACATGGTGA 7250 AACCCCGTCT CTACTAAAAA TACAAAAATT AGCTGAGGAC GGTGATGCGT 7300 | var(7296):[C:0.01] GCCTGTAGTC CCAGCTACTC AGGAGGGTGA GGCAGAGGAA TCGCTTGAAC 7350 | var(7309):[G:0.01] CCGGGACGTG GAGGTTGCAG TGAGCTGAGA TCGTGGCACC ACACTCCAGC 7400 CTGGTGATAG AGCGAGACTC CATCTCAAAA ACATTTTTTT CTTTTACCTG 7450 | var(7408):[C:0.03] | var(7414):[A:0.01] TGTCCTAATA CATATTTATA AAAACCTGGG GGATATGAGT TAGAATAATA 7500 TGTAACTGCA TTTCTGTCTG TTTGTGTTTG AAACATTTAA CAGTGAAATG 7550 | var(7518):[:0.01] TTAGACTGGG TTATTTGTAT CTGTGAGCCA CAGTCTCTTT AGTTTTACAC 7600 | var(7553):[G:0.01] | var(7556):[G:0.01] AGTCCTTTAC AGGACAGTCT TGGCAAAAGT GTGTAAGAAA TGCGGAGATT 7650 GAGGTTGGCT CCTTTGGAGA AATGTATTTA TTGGTAACCT TTGATAAAAT 7700 CAAAATTTGT GCTCCAGCTC CTCCTTATCT CTGGGACTGC TCAAC