LOCUS DQ451402 6322 bp DNA linear PRI 02-APR-2006 DEFINITION Homo sapiens heat shock 70kDa protein 1A (HSPA1A) gene, complete cds. ACCESSION DQ451402 VERSION DQ451402.1 GI:90657251 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6322) AUTHORS Livingston,R.J., Rieder,M.J., Shaffer,T., Bertucci,C., Baier,C.N., Rajkumar,N., Willa,H.T., Daniels,M., Downing,T.K., Stanaway,I.B., Nguyen,C.P., Gildersleeve,H., Cassidy,C.M., Johnson,E.J., Swanson,J.E., McFarland,I., Yool,B., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (16-MAR-2006) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..6322 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 218 /frequency="0.01" /replace="c" variation 353 /frequency="0.01" /replace="a" variation 438 /frequency="0.01" /replace="a" misc_feature 497..1508 /note="Region not scanned for variation" repeat_region 509..739 /rpt_family="Alu" /rpt_type=dispersed repeat_region 740..921 /rpt_family="Alu" /rpt_type=dispersed variation 1548 /frequency="0.01" /replace="a" variation 1549 /frequency="0.01" /replace="a" variation 1813 /frequency="0.42" /replace="a" gene 1942..4324 /gene="HSPA1A" mRNA 1942..4324 /gene="HSPA1A" /product="heat shock 70kDa protein 1A" variation 1948 /gene="HSPA1A" /frequency="0.01" /replace="a" variation 2042 /gene="HSPA1A" /frequency="0.03" /replace="c" variation 2111 /gene="HSPA1A" /frequency="0.01" /replace="a" variation 2112 /gene="HSPA1A" /frequency="0.46" /replace="c" CDS 2139..4064 /gene="HSPA1A" /codon_start=1 /product="heat shock 70kDa protein 1A" /protein_id="ABD96830.1" /db_xref="GI:90657252" /translation="MAKAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF TDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPK VQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKD AGVIAGLNVLRIINEPTAAAIAYGLDRTGKGERNVLIFDLGGGTFDVSILTIDDGIFE VKATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSS STQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDL VLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLL LLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMT KDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKG RLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEAD KKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAGGPGPGGFGA QGPKGGSGSGPTIEEVD" variation 2360 /gene="HSPA1A" /frequency="0.09" /replace="t" variation 2468 /gene="HSPA1A" /frequency="0.20" /replace="c" variation 3833 /gene="HSPA1A" /frequency="0.18" /replace="g" variation 3848 /gene="HSPA1A" /frequency="0.02" /replace="t" variation 4285 /gene="HSPA1A" /frequency="0.01" /replace="" variation 4425 /frequency="0.01" /replace="a" repeat_region 4509..4806 /rpt_family="Alu" /rpt_type=dispersed variation 4694 /frequency="0.04" /replace="a" variation 4787 /frequency="0.01" /replace="t" variation 4797 /frequency="0.02" /replace="c" variation 4877 /frequency="0.01" /replace="g" variation 4923 /frequency="0.01" /replace="a" variation 4970 /frequency="0.04" /replace="t" misc_feature 5244..6173 /note="Region not scanned for variation" repeat_region 5410..5717 /rpt_family="Alu" /rpt_type=dispersed repeat_region 5725..6024 /rpt_family="Alu" /rpt_type=dispersed repeat_region 6035..6085 /rpt_family="L1" /rpt_type=dispersed repeat_region 6086..6182 /rpt_family="Alu" /rpt_type=dispersed ORIGIN 1 tgcttatcta tctctcgatg gatacagatt acagaattta cagaataatg ttgctatgag 61 caagcctata caaatacatg gagacgctac tgtcatggca gactgctttt tggacagggt 121 agacaaaagt attctcagct actcaaagaa gttgggaagc aagtagctgt atattgtttt 181 caatttccca agtgacctaa ttctactgtc ctgttcctat atattttact gtgggattct 241 gtctctttat gacccaagag tagtgtacat tctggtctct tcaagagaca tcagcctcca 301 cacttgagtt ctgctgcctt cctgggataa tattctctat taggggttca ccggcagtaa 361 attccagtca ggctgaagat gactgctaga aaaccacaag ccttccagtt ttctcaaacg 421 acatggcact ccagacagta tctgtatcct tctcctaaat aaaactcctg ttttctggag 481 ccaataactg atcaataaag ggtttaaggg cggggggcgg tggctcacgc ctgtaatccc 541 agcactttga gaggccgagg cgggcggatc acggggtcag gagaacgaga ccatcctggc 601 taccatcctg gctaacacgg tgaaacctcg tctctactaa aaaatagaaa aaattagctg 661 ggcgtggtgg cgggcgccag tagttccagc tactcggatg gctgaggcag gagaatagct 721 tgaacccggg aggtggagca attagccggg cgcggtggcg ggcgcctgca gtccctgcta 781 ctcggaaggc tgaggcagga gaatggcctg aactcgggag gcagagcttg cagtgagcca 841 agatcgtgcc actgcactcc accctgggcg acagagcgag actccgtctc aaaaaaaaaa 901 aaaaaattaa aaataaataa ataaaaataa aataaagggt ttagtgtcta tccctctcca 961 caccgcagat tcctaggccg cactcccttt cccccgcttc ccagttaccc cgcctccccc 1021 ttaccccgcc ttccccgcct ccccatttcc ccgacaggcc gcactccctt cccccgcctc 1081 ccccattctg gctgctccga ccaatcaatc tgaagccatc ttagctttcc ccaagtgctc 1141 ctcctacccg gatcagccaa cgcccacata cctcaggctt aaaccaacta gggaactttc 1201 cagtactttc ccaaacaagg acctactgag cctttcaggt tcacaatcaa tcagatccct 1261 actggctcac ctagtctccc gacgccttcg cttcagtttg gaaacgtcca gattacgcag 1321 ccccagcgag taggtggggg ctccctcaat atcaaactgc acaaccgggg tccccccacc 1381 ccccaccccg tccctccctg caaatttgag acggctccaa ctcagtaatc tttttccaaa 1441 ctggcccatg aggtcagaga cagtatctcc attgtaacgt ggccgggcgg tgtcaacaca 1501 aacgccccca ccctcccctg gacgcgcgta acccgctccc cgcaccagcc ccctgcccac 1561 aactgcgcag gcccagcaag cccccacaat taaaagccca gcgccgaccc ttcctgtcaa 1621 ttaggcgctg aagcgcaggc ggtcagcatc gccatggaga ccaacaccct tcccaccgcc 1681 actccccctt cctctcaggg tccctgtccc ctccagtgaa tcccagaaga ctctggagag 1741 ttctgagcag ggggcggcac tctggcctct gattggtcca aggaaggctg gggggcagga 1801 cgggaggcga aacccctgga atattcccga cctggcagcc tcatcgagct cggtgattgg 1861 ctcagaaggg aaaaggcggg tctccgtgac gacttataaa agcccagggg caagcggtcc 1921 ggataacggc tagcctgagg agctgctgcg acagtccact acctttttcg agagtgactc 1981 ccgttgtccc aaggcttccc agagcgaacc tgtgcggctg caggcaccgg cgcgtcgagt 2041 ttccggcgtc cggaaggacc gagctcttct cgcggatcca gtgttccgtt tccagccccc 2101 aatctcagag cggagccgac agagagcagg gaaccggcat ggccaaagcc gcggcgatcg 2161 gcatcgacct gggcaccacc tactcctgcg tgggggtgtt ccaacacggc aaggtggaga 2221 tcatcgccaa cgaccagggc aaccgcacca cccccagcta cgtggccttc acggacaccg 2281 agcggctcat cggggatgcg gccaagaacc aggtggcgct gaacccgcag aacaccgtgt 2341 ttgacgcgaa gcggctgatc ggccgcaagt tcggcgaccc ggtggtgcag tcggacatga 2401 agcactggcc tttccaggtg atcaacgacg gagacaagcc caaggtgcag gtgagctaca 2461 agggggagac caaggcattc taccccgagg agatctcgtc catggtgctg accaagatga 2521 aggagatcgc cgaggcgtac ctgggctacc cggtgaccaa cgcggtgatc accgtgccgg 2581 cctacttcaa cgactcgcag cgccaggcca ccaaggatgc gggtgtgatc gcggggctca 2641 acgtgctgcg gatcatcaac gagcccacgg ccgccgccat cgcctacggc ctggacagaa 2701 cgggcaaggg ggagcgcaac gtgctcatct ttgacctggg cgggggcacc ttcgacgtgt 2761 ccatcctgac gatcgacgac ggcatcttcg aggtgaaggc cacggccggg gacacccacc 2821 tgggtgggga ggactttgac aacaggctgg tgaaccactt cgtggaggag ttcaagagaa 2881 aacacaagaa ggacatcagc cagaacaagc gagccgtgag gcggctgcgc accgcctgcg 2941 agagggccaa gaggaccctg tcgtccagca cccaggccag cctggagatc gactccctgt 3001 ttgagggcat cgacttctac acgtccatca ccagggcgag gttcgaggag ctgtgctccg 3061 acctgttccg aagcaccctg gagcccgtgg agaaggctct gcgcgacgcc aagctggaca 3121 aggcccagat tcacgacctg gtcctggtcg ggggctccac ccgcatcccc aaggtgcaga 3181 agctgctgca ggacttcttc aacgggcgcg acctgaacaa gagcatcaac cccgacgagg 3241 ctgtggccta cggggcggcg gtgcaggcgg ccatcctgat gggggacaag tccgagaacg 3301 tgcaggacct gctgctgctg gacgtggctc ccctgtcgct ggggctggag acggccggag 3361 gcgtgatgac tgccctgatc aagcgcaact ccaccatccc caccaagcag acgcagatct 3421 tcaccaccta ctccgacaac caacccgggg tgctgatcca ggtgtacgag ggcgagaggg 3481 ccatgacgaa agacaacaat ctgttggggc gcttcgagct gagcggcatc cctccggccc 3541 ccaggggcgt gccccagatc gaggtgacct tcgacatcga tgccaacggc atcctgaacg 3601 tcacggccac ggacaagagc accggcaagg ccaacaagat caccatcacc aacgacaagg 3661 gccgcctgag caaggaggag atcgagcgca tggtgcagga ggcggagaag tacaaagcgg 3721 aggacgaggt gcagcgcgag agggtgtcag ccaagaacgc cctggagtcc tacgccttca 3781 acatgaagag cgccgtggag gatgaggggc tcaagggcaa gatcagcgag gccgacaaga 3841 agaaggtgct ggacaagtgt caagaggtca tctcgtggct ggacgccaac accttggccg 3901 agaaggacga gtttgagcac aagaggaagg agctggagca ggtgtgtaac cccatcatca 3961 gcggactgta ccagggtgcc ggtggtcccg ggcctggggg cttcggggct cagggtccca 4021 agggagggtc tgggtcaggc cccaccattg aggaggtaga ttaggggcct ttccaagatt 4081 gctgtttttg ttttggagct tcaagacttt gcatttccta gtatttctgt ttgtcagttc 4141 tcaatttcct gtgtttgcaa tgttgaaatt ttttggtgaa gtactgaact tgcttttttt 4201 ccggtttcta catgcagaga tgaatttata ctgccatctt acgactattt cttcttttta 4261 atacacttaa ctcaggccat tttttaagtt ggttacttca aagtaaataa actttaaaat 4321 tcaagtgatg ccttttattc ctttatttgg gggtcagtag ggtctgcata ggttgttttt 4381 cccatagcgt ctaaaatgga atggcatttt tgcttccagt aagggcagat tttgcagagg 4441 tgtgactatt gtaatgtgat ccatttgtgt tagacaaatg gtatcctcca gtaaagcttc 4501 ttgattctgg ccaggagtgg tggctcaagc ctgtaatccc agcactttgg gaggctgagg 4561 tgggcggatc acttgaggtc aggagttcca gaccaacctg gccaatgtgg tgaaaccctg 4621 tctctactaa aaacacaaaa attagctggg cgtggtggtg cgtgcctgta gtcccaggga 4681 ggctgaggca ggagaatcgt gtgaacccag gaagcagtgg tagcagtgag ccgagatcac 4741 gccattgcac tctagcctgg gcatcacagc aagactccgt ctcacacaca cacacaaaaa 4801 agtaaagttt gttgatgctg attgggttta gcctgagggt acagaaaaag tttaacacct 4861 gggagggtag ccttaaagtg atgtttgtgt aagattggtc tcaaaagagg tgggaggggg 4921 gcggggatgt ttctgcaaaa gtggtcaaaa agaatgcagt tagatgggag gccagcgctc 4981 ctacctcctg taggtacacc tgatatgctc atggacttga tacttaatct agattcaaca 5041 tggaatggaa ggagtgtcct aaatttcaaa gtgaaaaaac gggtacattc actggcttgc 5101 tgagttatac acatgtgctt tagttgtcat cttttaaaat ggaagggttt ggctcgatgc 5161 ctctctcatg actgaaagca tactgaaata gaaatgtcac attcttagca gttatcacct 5221 acaatttaag tacgccagtg agcacccggg ccaggaagac ctacagactt cactcccatg 5281 cactttccct tggagatgct tcatgcccca gccgctagca tcctagaagt aattccctcc 5341 tccttggaaa acgcccacta caatccttaa agctcccgga gtgagccctt ttaaaaatga 5401 attgtatctg gccgggcgtg ctggctcatg cctgtaatcc cagcactttg ggaggctgag 5461 gcaggcggat cacctgaggt caggagttcg agaccagcct ggccaacatg gtgaggaccc 5521 cccccaccac ccacctcctg cactaaaagt acaaaaatca gccaggcgcg atggtgtgcg 5581 cctgtaatcc cagctattcg ggaggctgag gcaggcgaat cgtttgaact caaaggcaga 5641 ggtttcagtg agccgagatt gcgccactgc actccagcct aggtgacaga gcgagactcc 5701 atctcaaaaa ataaaaattg tgtcggccag gcgcagtggc tcatgcctgt aatcccagca 5761 ctttgggagg ccgaggtggg tggatcacct gaggtcagga gttcaagacc agcctggcca 5821 acagggtgaa accccatctc tactaaaaat acaaaaaatt agctgggcgt ggtggcgggc 5881 acctataatc ccagcaactt gggaggctga ggcagaagaa tcggttgaac ccaggaggtg 5941 gatgttgcag tgagccaaga tcgtgccatt gcactccagc ctgaacaatg agtgaaattc 6001 tgtctcagtg aataaataaa taaatagtat ctaagggcga tgaaaatgtt ttggaaccag 6061 agttgacggt tgcataacat tgtaaaggtc aaggctgcag tgagccatga ctgtaccact 6121 gcactccagc ctgagcaaca gagtgagacc ctgtctctaa aaaaaaaaaa aagaaaaaaa 6181 aatcaattgt atcaatatta cattaaagca ctttatgagc ttatgtgtac ctcaaagccc 6241 atcaaaccat tcactaaata cttgttaatg aagaaaatcc agtgttatgg gaaatgatac 6301 ataaaggtag accttgcttt gg //