Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000079 00000 ------------ T 0.90 0.96 0.86 0.95 0.78 0.88 C 0.10 0.04 0.14 0.05 0.22 0.12 0000 --- --- --- --- 000091 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000262 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 000562 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 000651 00000 ------------ C 0.87 0.92 0.86 0.95 0.72 0.86 T 0.13 0.08 0.14 0.05 0.28 0.14 0000 --- --- --- --- 000739 00000 ------------ - 0.07 0.04 0.00 0.00 0.00 0.02 + 0.93 0.96 1.00 1.00 1.00 0.98 0000 --- --- --- --- 000754 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000769 00000 ------------ T 0.77 0.71 0.70 0.73 0.71 0.72 G 0.23 0.29 0.30 0.27 0.29 0.28 0000 --- --- --- --- 001359 00000 ------------ A 1.00 1.00 1.00 1.00 0.97 0.99 T 0.00 0.00 0.00 0.00 0.03 0.01 0000 --- --- --- --- 001365 00000 ------------ - 0.12 0.00 0.06 0.32 0.22 0.16 + 0.88 1.00 0.94 0.68 0.78 0.84 0000 --- --- --- --- 001758 00000 ------------ T 0.96 1.00 1.00 0.98 1.00 0.99 C 0.04 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 001785 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 001810 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 001834 00000 ------------ A 0.93 1.00 1.00 1.00 1.00 0.99 T 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001916 00000 ------------ C 1.00 1.00 0.95 0.84 0.79 0.90 A 0.00 0.00 0.05 0.16 0.21 0.10 0000 --- --- --- --- 001944 00000 ------------ A 0.47 0.54 0.57 0.68 0.42 0.54 G 0.53 0.46 0.43 0.32 0.58 0.46 0000 --- --- --- --- 001968 00024 5' UTR - 0.83 0.91 0.86 0.95 0.76 0.86 + 0.17 0.09 0.14 0.05 0.24 0.14 0000 --- --- --- --- 004972 00000 ------------ C 1.00 0.96 0.95 0.84 0.81 0.90 A 0.00 0.04 0.05 0.16 0.19 0.10 0000 --- --- --- --- 004992 00000 ------------ T 1.00 1.00 0.95 1.00 1.00 0.99 C 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 005257 00000 ------------ A 1.00 0.88 1.00 1.00 1.00 0.98 C 0.00 0.12 0.00 0.00 0.00 0.02 0000 --- --- --- --- 005749 00000 ------------ G 1.00 1.00 0.97 0.97 1.00 0.99 A 0.00 0.00 0.03 0.03 0.00 0.01 0000 --- --- --- --- 005913 00000 ------------ - 0.00 0.00 0.00 0.00 0.05 0.01 + 1.00 1.00 1.00 1.00 0.95 0.99 0000 --- --- --- --- 006894 00000 ------------ - 0.75 0.94 0.88 0.97 0.70 0.84 + 0.25 0.06 0.12 0.03 0.30 0.16 0000 --- --- --- --- 007160 00000 ------------ G 0.75 0.81 0.78 0.86 0.92 0.83 A 0.25 0.19 0.22 0.14 0.08 0.17 0000 --- --- --- --- 007666 00000 ------------ A 1.00 1.00 0.95 0.84 0.81 0.90 G 0.00 0.00 0.05 0.16 0.19 0.10 0000 --- --- --- --- 007740 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 008191 00000 ------------ T 0.93 0.96 1.00 1.00 1.00 0.98 C 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 008607 00000 ------------ A 0.93 0.96 1.00 1.00 1.00 0.98 G 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 011794 00000 ------------ A 0.58 0.59 0.57 0.71 0.44 0.57 T 0.42 0.41 0.43 0.29 0.56 0.43 0000 --- --- --- --- 011841 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 012056 00000 ------------ A 0.92 0.83 1.00 1.00 1.00 0.97 G 0.08 0.17 0.00 0.00 0.00 0.03 0000 --- --- --- --- 012110 00000 ------------ T 0.96 1.00 0.75 0.83 1.00 0.90 A 0.04 0.00 0.25 0.17 0.00 0.10 0000 --- --- --- --- 012558 00000 ------------ T 1.00 1.00 0.95 0.84 0.78 0.90 A 0.00 0.00 0.05 0.16 0.22 0.10 0000 --- --- --- --- 013392 00000 ------------ T 1.00 0.96 0.95 0.84 0.79 0.90 A 0.00 0.04 0.05 0.16 0.21 0.10 0000 --- --- --- --- 013536 00000 ------------ C 0.80 0.83 0.75 0.89 0.95 0.84 A 0.20 0.17 0.25 0.11 0.05 0.16 0000 --- --- --- --- 013909 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 014122 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 015578 00000 ------------ - 0.93 0.96 1.00 1.00 1.00 0.98 + 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 015630 00000 ------------ - 0.23 0.27 0.30 0.27 0.27 0.27 + 0.77 0.73 0.70 0.73 0.73 0.73 0000 --- --- --- --- 015699 00000 ------------ C 1.00 1.00 0.95 0.84 0.81 0.91 T 0.00 0.00 0.05 0.16 0.19 0.09 0000 --- --- --- --- 016126 00000 ------------ A 0.47 0.54 0.57 0.68 0.44 0.54 G 0.53 0.46 0.43 0.32 0.56 0.46 0000 --- --- --- --- 016152 00000 ------------ A 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 016337 00000 ------------ T 0.93 1.00 0.86 0.95 0.77 0.89 G 0.07 0.00 0.14 0.05 0.23 0.11 0000 --- --- --- --- 016401 00000 ------------ G 0.93 1.00 1.00 1.00 1.00 0.99 A 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 016408 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 016679 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 016772 00000 ------------ C 0.97 1.00 0.75 0.84 0.83 0.86 T 0.03 0.00 0.25 0.16 0.17 0.14 0000 --- --- --- --- 016844 00000 ------------ G 0.83 0.92 0.86 0.95 0.71 0.85 T 0.17 0.08 0.14 0.05 0.29 0.15 0000 --- --- --- --- 017091 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 018409 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 018470 00000 ------------ T 0.93 0.96 1.00 1.00 1.00 0.98 G 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 019423 00000 ------------ G 0.83 0.96 0.86 0.95 0.77 0.87 A 0.17 0.04 0.14 0.05 0.23 0.13 0000 --- --- --- --- 019555 00000 ------------ A 1.00 1.00 1.00 0.98 1.00 0.99 G 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 019756 00000 ------------ A 1.00 1.00 1.00 0.98 1.00 0.99 G 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 019884 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 T 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 019963 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 020216 00000 ------------ G 1.00 0.96 0.75 0.89 1.00 0.91 T 0.00 0.04 0.25 0.11 0.00 0.09 0000 --- --- --- --- 020318 00000 ------------ T 0.93 0.96 1.00 1.00 1.00 0.98 G 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 020441 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 020454 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 020477 00000 ------------ T 0.57 0.62 0.57 0.68 0.43 0.57 C 0.43 0.38 0.43 0.32 0.57 0.43 0000 --- --- --- --- 020497 00000 ------------ C 1.00 1.00 1.00 1.00 0.93 0.98 T 0.00 0.00 0.00 0.00 0.07 0.02 0000 --- --- --- --- 020557 00000 ------------ A 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 020699 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 020776 00000 ------------ G 1.00 0.96 1.00 1.00 0.94 0.98 A 0.00 0.04 0.00 0.00 0.06 0.02 0000 --- --- --- --- 020832 00000 ------------ A 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 020969 00000 ------------ C 0.93 0.96 0.86 0.95 0.77 0.88 T 0.07 0.04 0.14 0.05 0.23 0.12 0000 --- --- --- --- 020976 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 020998 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 021010 00000 ------------ A 1.00 1.00 0.95 1.00 1.00 0.99 G 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 021089 00000 ------------ C 1.00 1.00 1.00 1.00 0.93 0.98 T 0.00 0.00 0.00 0.00 0.07 0.02 0000 --- --- --- --- 021324 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 021628 00000 ------------ G 0.83 0.92 0.86 0.95 0.71 0.85 T 0.17 0.08 0.14 0.05 0.29 0.15 0000 --- --- --- --- 021686 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 021944 00000 ------------ C 0.53 0.50 0.61 0.68 0.44 0.55 T 0.47 0.50 0.39 0.32 0.56 0.45 0000 --- --- --- --- 023037 00000 ------------ G 0.80 0.83 0.75 0.88 0.92 0.84 A 0.20 0.17 0.25 0.12 0.08 0.16 0000 --- --- --- --- 023095 00000 ------------ C 0.93 0.96 1.00 1.00 1.00 0.98 T 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 023187 00000 ------------ A 0.83 0.92 0.86 0.95 0.71 0.85 T 0.17 0.08 0.14 0.05 0.29 0.15 0000 --- --- --- --- 023529 00000 ------------ G 0.53 0.45 0.57 0.72 0.44 0.54 A 0.47 0.55 0.43 0.28 0.56 0.46 0000 --- --- --- --- 023669 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 023765 00000 ------------ - 0.90 0.95 0.98 0.97 1.00 0.97 + 0.10 0.05 0.02 0.03 0.00 0.03 0000 --- --- --- --- 024067 00000 ------------ A 1.00 0.95 1.00 1.00 1.00 0.99 G 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 024132 00000 ------------ A 0.77 0.70 0.77 0.88 0.92 0.82 G 0.23 0.30 0.23 0.12 0.08 0.18 0000 --- --- --- --- 024681 00000 ------------ C 0.79 0.68 0.70 0.74 0.73 0.73 T 0.21 0.32 0.30 0.26 0.27 0.27 0000 --- --- --- --- 024865 00000 ------------ A 0.89 0.95 0.75 0.81 0.85 0.84 G 0.11 0.05 0.25 0.19 0.15 0.16 0000 --- --- --- --- 024872 00000 ------------ A 0.86 0.91 0.86 0.95 0.70 0.85 G 0.14 0.09 0.14 0.05 0.30 0.15 0000 --- --- --- --- 024917 00000 ------------ C 1.00 0.96 1.00 1.00 0.93 0.98 T 0.00 0.04 0.00 0.00 0.07 0.02 0000 --- --- --- --- 025198 01075 SYNON A 1.00 1.00 1.00 1.00 0.94 0.98 T 0.00 0.00 0.00 0.00 0.06 0.02 0329 CTA CTT LEU(L) LEU(L) 025347 00000 ------------ T 1.00 1.00 1.00 1.00 0.94 0.98 C 0.00 0.00 0.00 0.00 0.06 0.02 0000 --- --- --- --- 025367 00000 ------------ T 0.96 1.00 1.00 1.00 1.00 0.99 G 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 025386 00000 ------------ T 0.96 1.00 1.00 0.78 0.98 0.94 C 0.04 0.00 0.00 0.23 0.02 0.06 0000 --- --- --- --- 025436 00000 ------------ A 1.00 0.95 1.00 1.00 1.00 0.99 T 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 025602 00000 ------------ C 0.93 0.82 1.00 1.00 1.00 0.97 T 0.07 0.18 0.00 0.00 0.00 0.03 0000 --- --- --- --- 025619 00000 ------------ G 0.93 0.95 1.00 1.00 1.00 0.98 A 0.07 0.05 0.00 0.00 0.00 0.02 0000 --- --- --- --- 026188 00000 ------------ G 0.81 0.68 0.70 0.73 0.74 0.73 A 0.19 0.32 0.30 0.27 0.26 0.27 0000 --- --- --- --- 026395 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 026505 00000 ------------ - 0.00 0.05 0.00 0.00 0.00 0.01 + 1.00 0.95 1.00 1.00 1.00 0.99 0000 --- --- --- --- 027222 00000 ------------ T 1.00 1.00 0.96 1.00 1.00 0.99 C 0.00 0.00 0.04 0.00 0.00 0.01 0000 --- --- --- --- 027583 00000 ------------ A 0.93 0.95 1.00 1.00 1.00 0.98 T 0.07 0.05 0.00 0.00 0.00 0.02 0000 --- --- --- --- 027637 00000 ------------ G 0.83 0.90 1.00 1.00 0.91 0.94 A 0.17 0.10 0.00 0.00 0.09 0.06 0000 --- --- --- --- 027762 00000 ------------ C 0.77 0.70 0.79 0.89 0.91 0.83 T 0.23 0.30 0.21 0.11 0.09 0.17 0000 --- --- --- --- 028075 00000 ------------ A 0.77 0.75 0.79 0.89 0.91 0.83 G 0.23 0.25 0.21 0.11 0.09 0.17 0000 --- --- --- --- 028101 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 028117 00000 ------------ T 0.53 0.54 0.60 0.68 0.43 0.56 G 0.47 0.46 0.40 0.32 0.57 0.44 0000 --- --- --- --- 028262 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 028264 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 028330 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 028391 00000 ------------ C 0.93 1.00 1.00 1.00 1.00 0.99 G 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 028889 00000 ------------ C 1.00 1.00 1.00 1.00 0.96 0.99 G 0.00 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- 028926 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 029293 00000 ------------ G 1.00 0.96 0.94 0.83 0.81 0.89 A 0.00 0.04 0.06 0.17 0.19 0.11 0000 --- --- --- --- 029385 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 029990 00000 ------------ C 1.00 1.00 1.00 1.00 0.95 0.99 A 0.00 0.00 0.00 0.00 0.05 0.01 0000 --- --- --- --- 030111 00000 ------------ A 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 030202 00000 ------------ T 1.00 1.00 1.00 0.97 1.00 0.99 C 0.00 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- 030338 00000 ------------ - 0.82 0.96 0.88 1.00 0.79 0.88 + 0.18 0.04 0.12 0.00 0.21 0.12 0000 --- --- --- --- 032154 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 032171 00000 ------------ C 0.92 1.00 1.00 1.00 1.00 0.99 G 0.08 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 034387 01540 SYNON T 0.95 1.00 1.00 1.00 1.00 0.99 C 0.05 0.00 0.00 0.00 0.00 0.01 0484 GAT GAC ASP(D) ASP(D) 034897 02050 3' UTR G 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 000739: AGAT 001365: AT 001968: TAGCTGCCGCCG 005913: AAC 006894: GG 015578: A 015630: T 023765: AAGTGGATGAAGATTTTTATATTTT 026505: CCATCC 030338: TC