LOCUS AY785560 7528 bp DNA linear PRI 23-OCT-2004 DEFINITION Homo sapiens glutathione peroxidase 2 (gastrointestinal) (GPX2) gene, complete cds. ACCESSION AY785560 VERSION AY785560.1 GI:54288834 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 7528) AUTHORS Livingston,R.J., Rieder,M.J., Chung,M.-W., Ritchie,T.K., Olson,A.N., Nguyen,C.P., Nguyen,D.A., Poel,C.L., Chambers,S.W., Schackwitz,W.S., Sherwood,J.K., Sherwood,A.M., Leithauser,B.J. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (15-OCT-2004) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..7528 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 236 /frequency="0.01" /replace="a" variation 262 /frequency="0.07" /replace="a" variation 709 /frequency="0.01" /replace="a" variation 914 /frequency="0.02" /replace="t" variation 915 /frequency="0.34" /replace="a" variation 1019 /frequency="0.01" /replace="a" variation 1142 /frequency="0.07" /replace="c" variation 1261 /frequency="0.31" /replace="" variation 1461 /frequency="0.07" /replace="g" variation 1473 /frequency="0.11" /replace="t" variation 1557 /frequency="0.01" /replace="a" variation 1608 /frequency="0.01" /replace="g" variation 1803 /frequency="0.01" /replace="a" variation 1819 /frequency="0.06" /replace="c" gene 1931..5594 /gene="GPX2" mRNA join(1931..2239,4910..5594) /gene="GPX2" /product="glutathione peroxidase 2 (gastrointestinal)" CDS join(2018..2239,4910..5260) /gene="GPX2" /note="selenocysteine" /codon_start=1 /transl_except=(pos:2135..2137,aa:Sec) /product="glutathione peroxidase 2 (gastrointestinal)" /protein_id="AAV31780.1" /db_xref="GI:54288835" /translation="MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTT RDFTQLNELQCRFPRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLV QKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIG PEGEPFRRYSRTFPTINIEPDIKRLLKVAI" variation 2248 /gene="GPX2" /frequency="0.01" /replace="" variation 2321 /gene="GPX2" /frequency="0.01" /replace="g" variation 2328 /gene="GPX2" /frequency="0.06" /replace="t" variation 2366 /gene="GPX2" /frequency="0.06" /replace="a" variation 2405 /gene="GPX2" /frequency="0.01" /replace="g" repeat_region 2445..2567 /rpt_family="L2" /rpt_type=dispersed repeat_region 2592..2755 /rpt_family="MIR" /rpt_type=dispersed variation 2661 /gene="GPX2" /frequency="0.07" /replace="c" variation 2827 /gene="GPX2" /frequency="0.01" /replace="c" variation 2881 /gene="GPX2" /frequency="0.01" /replace="a" variation 2953 /gene="GPX2" /frequency="0.48" /replace="t" variation 3244 /gene="GPX2" /frequency="0.01" /replace="t" variation 3348 /gene="GPX2" /frequency="0.02" /replace="g" repeat_region 3381..3689 /rpt_family="Alu" /rpt_type=dispersed variation 3489 /gene="GPX2" /frequency="0.46" /replace="c" variation 3695 /gene="GPX2" /frequency="0.01" /replace="t" variation 3805 /gene="GPX2" /frequency="0.24" /replace="c" variation 3887 /gene="GPX2" /frequency="0.01" /replace="c" variation 4302 /gene="GPX2" /frequency="0.25" /replace="c" variation 4462 /gene="GPX2" /frequency="0.47" /replace="a" variation 4472 /gene="GPX2" /frequency="0.01" /replace="t" repeat_region 4613..4757 /rpt_family="Alu" /rpt_type=dispersed variation 4702 /gene="GPX2" /frequency="0.01" /replace="c" variation 4787..4790 /gene="GPX2" /frequency="0.75" /replace="" variation 5064 /gene="GPX2" /frequency="0.01" /replace="t" variation 5123 /gene="GPX2" /frequency="0.01" /replace="t" variation 5170 /gene="GPX2" /frequency="0.01" /replace="a" variation 5703 /frequency="0.01" /replace="c" variation 5744 /frequency="0.07" /replace="a" variation 5875 /frequency="0.01" /replace="c" variation 6036..6037 /frequency="0.01" /replace="" variation 6084 /frequency="0.24" /replace="t" repeat_region 6138..6437 /rpt_family="Alu" /rpt_type=dispersed variation 6205 /frequency="0.03" /replace="a" variation 6534 /frequency="0.24" /replace="c" variation 6567 /frequency="0.24" /replace="t" variation 7024 /frequency="0.24" /replace="g" variation 7350 /frequency="0.25" /replace="c" variation 7358 /frequency="0.01" /replace="c" variation 7380 /frequency="0.07" /replace="t" variation 7407 /frequency="0.02" /replace="t" variation 7428 /frequency="0.01" /replace="g" ORIGIN 1 ccaggctttc tgcctaagcc agtgctgtgt ccagagcaag cactgtccca cagaaagcca 61 taagaatcat acgctgctta gtgtatgctt aaagttgtaa gcttttggaa agcgaggcca 121 gtttgaggta aatttggaga cagagatatt ttaggagagc ctcaccaagt atattccatt 181 aggaaaggtg agaaccctgg gagtctgaag ggtccaaggt cacaccagga gaaaagggat 241 ggcatgtacc taaggaagag ggaaccccca cactcctcat cttgggaact cccatggcct 301 tcttgaagaa ggcttgcaaa agagcagaga ataagaggtg tctctggagg cccagagagt 361 actaggggga agctctaggt atgcacataa atccggcaag ttacagttct gcccactatc 421 agtgccaagt ccttgtgact cagtggcttg gtggggactc tttcttattg gttgcttcta 481 ggaactccac ccagcttcag caggggacac acttccctct acacttcctg tcactccttc 541 tgtccactta ggtaatggaa acttgttttt agggagcagc cagctgagac acatggtccc 601 tgtatacttg aacagccatg gaaaagctgc aaggcagctt ggcgctccct ggtgataatt 661 acttcatctc atctcaacaa atcagattct caagaccagc tgctccccgg acttgcttat 721 tctttgttcc aaggagacag ttcccaatgg atgtgcccct gtgaaaacac cctagtaaac 781 atttgctttg ttattgaaat ttcactctaa aatcccaaag ctaggtcaag ccccattgct 841 agttttactg atgaagaaat caaggcattt ttaaaagagt aacttgttga gttggcgggt 901 gcttgggtct tttcggtttc tgtggcttcc aggggtgggc ctctgagatg gcccttagca 961 gatgtcctgc gatgcactgc acgcctcttg ttgaaagcat caggggtgac ctgcctgcgt 1021 ctggaaccac agcagcttca acttcctcca cacacttcct tctgtgggaa ggtgaccagc 1081 acaaacccgc tctgaaaagt cttggggacc aaatctctgt ctgagaggaa ggtaggtgca 1141 gttcatccac taagtttatc cacctgttct gtgactcctc ttcaccattc tcccagcaac 1201 gactgagcct catgacttgg gggctggggg atgaggtgga ggtgggggat ataatatagg 1261 agatggtaca gtgcaggggc agaggctggt gtgttctcca ggacaagtgg caccacgcac 1321 tgaaagactt ttcaagataa acacaacttt gtctcttcag cctggcaaga gctgaggcac 1381 tgaaaacttc ttttttcccc tagaaaatga cacactctcc tcctaagggt ccctttgatt 1441 ttgtcctggt ggaaagcaac aaagagaaga acgtgaacag gaatatgtat atttcagttg 1501 tcatctgagt cccatggata ggaggctcaa ttctcttctt catctttcag atctccgcag 1561 accctgccct ctcactgtac aattcagaga ttgacactca gcaggcattc aataaacgtc 1621 tgtgtcaaat gagaacaact tgatggggca agtaggagtc aatcctgcat ccctccctcc 1681 ctttttttcc tctccattcg acctttaggg ctctggtttc ctgtaagcag tgaattattt 1741 acctctgctc atagatatca aattggccct tcccaggttg cagcagggtg gggcggggag 1801 gcggccttgt tcagtctgtt aataggagga gcaacctcct tgttcaaaca gcacttacag 1861 gtggggacct gtttttgcta agtcatcctg gggatgctca aagctccatt gttagatcct 1921 ttctgtcctc cttcctggct cctccttcct ccccacccct ctaataggct cataagtggg 1981 ctcaggcctc tctgcggggc tcactctgcg cttcaccatg gctttcattg ccaagtcctt 2041 ctatgacctc agtgccatca gcctggatgg ggagaaggta gatttcaata cgttccgggg 2101 cagggccgtg ctgattgaga atgtggcttc gctctgaggc acaaccaccc gggacttcac 2161 ccagctcaac gagctgcaat gccgctttcc caggcgcctg gtggtccttg gcttcccttg 2221 caaccaattt ggacatcagg tgaggggtcc ctccttgtaa tgcaccaaaa gtgttgggtt 2281 ggtgtagctc aggtgggata aaaggagagg ctgaatgacc atgttttgga gtgtctggaa 2341 taatggggta tgttttgtta agctaggtct ttaggtgcat gtgacatacc aagagaaggt 2401 atatattttt taagattaaa cactgaggct gtgtgatttt tatagtttac tgtctttcta 2461 ctatattact ccatgagggc tggttccagg tctgtgtttc tctccactgt gtcctcagtg 2521 cctagggcac agaaagcact cattaaatat ttgttgaata aatgagtgga gaaagtagag 2581 gccaggaatc aaacaagaat tggacagact caagagacct tagctctagc tggacttggt 2641 tttgctattt aatggctctg tgccctcgga aagggcgctt catttttcgg tttagtttcc 2701 tcatctgtaa attggggata ataccactta gctcatagga ttattatgat gtttagggga 2761 caggatatac aaaagtaact tgaaaaatat aaagtactat gcaaatgcaa gcaaactgtt 2821 atttagattg aggatgattt ttgttggttt aaattagcca agtggaaaga aaataagcag 2881 gaaagagaaa ggttttcaaa aggcacgtgc ctctgggcat tacatgcacc tatttctgat 2941 taatgggtca agctgttata gatcttcagc ccacacacct cgagttctct tttagggatt 3001 cttctatttc cacctatgat tttaacgtac aagcagggag aatgaaccca agcgaaccct 3061 ctcgttataa tccccttagt tcaattcaca gtggtatgaa ggtgaggaag acaggaaagc 3121 aggaaggctg aagcatcact ggctgtgaca aacctgagcc caaactgttc actgctctca 3181 ctgttcttcc ctaagttttc tgtctggcct tttctagagc aggagagaca gaagtagcaa 3241 accctctttc gagatgtccc tccagcccca gaagtacctc cagcctcaca ccatctcttc 3301 agcctagcaa gttgctggag ggagtctata acctaccagg agccagccag ccatttgtat 3361 caagaaatag aaatctgcca gggtacagtg gctcacacct ataatcccag cgctttggga 3421 ggctaaggta ggcagattgc ttgagctcag gagttcaaga ttagcctgag caacatggtg 3481 aaaccttgtt tctacaaaaa attgcaaaaa ttagccaggc atggtggcat gtgcctgtag 3541 tcacagctac ttgggacgct gaagtagcag gatcgcctga gcctgggaag tcgaggctgc 3601 agtgagctat gattgtgcca ccgcacccca gcctaggtga cagagtgagg ccctgtctca 3661 ggaaaaaaaa cagaaacaaa aacagagaag tccactagag atcagctctg ggctcatgat 3721 gtcatgatgg cctggaactg actgaactag ttagttctca caggtcagaa gcaggaactt 3781 tctcccagag gaaggtatct gtctgttaaa ttggaaaggt agaggtggaa aagaagggtt 3841 cccataggcc ttttggattg tcatgaatgg tgatgctgag agggaatagg acagggatgg 3901 cagtggggag ggaaaggcag ggaccaggtt ttgagccaaa gcatgcgtag ctgagagcag 3961 tgagtggata ggaggtgcag cagtctttgg gtagcagcct actcaagaaa agaatgataa 4021 ttacatactc acaatcttta gccatcaagc acttatttcc tcaactcccc ctccccctgg 4081 cctattgcca aaccctaaat cctgtatcct atttacttca tgcctgttgg ttactaagta 4141 gttccattta gagtacacat tcattgttgc cttgaacttg ctctgctgtt atggcacctg 4201 aaaactagat gttcttggat gggggtcttc cttcatcaaa gcttcttccc atttgtactt 4261 cagttctagg acaaggcaag aagaaagcaa gaagctgtaa atcccattcc tctgggtctc 4321 aatttcaccc tcagttcaag gagctgagta ggcagaggca aaggctatac tcaacacacg 4381 tgcaattgaa agcaggcgag gcaaaaccag ggcagaggaa aggaaagggg tgtgtgtgta 4441 ggtatggatt tatgggtagg tgggtcggta ggttagttga agaggaggtt ctaagcagta 4501 taacctaagc ctcttttctc tttcttctgc ttcaaacacc ttaagaactg ctcagggtag 4561 actggagaca aaagcaacag ctcagaagtg ctaaatcttg aagagcagcc aaagcatggg 4621 caacaaagtg agaccccatc tctacaaaaa aaaaaaaaaa ttagccgggc atggtggcct 4681 gtgtctgtag tctcagctac taaagaggct gaagcaggag gaatgcttga gcccagaagt 4741 tcaaggctgc agtgagcaac acctcgtctg tcttgtctct ctctctctcc ttcacagtga 4801 aaaagaatga ccctggggag ggagtgtagg agggtgaaag agtttcatgt tgtggatctt 4861 tctcttcccc cacccactgt ccacgcactt tgtctttttc ctcccctagg agaactgtca 4921 gaatgaggag atcctgaaca gtctcaagta tgtccgtcct gggggtggat accagcccac 4981 cttcaccctt gtccaaaaat gtgaggtgaa tgggcagaac gagcatcctg tcttcgccta 5041 cctgaaggac aagctcccct acccttatga tgacccattt tccctcatga ccgatcccaa 5101 gctcatcatt tggagccctg tgcgccgctc agatgtggcc tggaactttg agaagttcct 5161 catagggccg gagggagagc ccttccgacg ctacagccgc accttcccaa ccatcaacat 5221 tgagcctgac atcaagcgcc tccttaaagt tgccatatag atgtgaactg ctcaacacac 5281 agatctccta ctccatccag tcctgaggag ccttaggatg cagcatgcct tcaggagaca 5341 ctgctggacc tcagcattcc cttgatatca gtccccttca ctgcagagcc ttgcctttcc 5401 cctctgcctg tttccttttc ctctcccaac cctctggttg gtgattcaac ttgggctcca 5461 agacttgggt aagctctggg ccttcacaga atgatggcac cttcctaaac cctcatgggt 5521 ggtgtctgag aggcgtgaag ggcctggagc cactctgcta gaagagacca ataaagggca 5581 ggtgtggaaa cggccagcct gtgtgtgtgt tctttgacag agggcggagg gaagctacaa 5641 actgcaggtg ggatagagga gctgctagca cacaaagctt tgggagggga ggatctgacg 5701 gatcaaggga tgccctaatt actgacagga aagcaagcgc tggccaaggt ctgcagtggc 5761 aggtgcagtt acgggaaatg tgaattatat tattccttta cagctcttct tcagaactgg 5821 ggaaaaagag aaagtgataa tgggaggtag aggaggaaaa gacaatgagc cctttggttg 5881 gggatattgg gaggctgtta ggaggattac agtcaggaag catcaatagc actgtgggta 5941 ctgggccaac tagatctgac ttgtgccttg ggaaattcct gggcagtcag cttagttaat 6001 gtttaccaat agcaagggca tagagggtgt agttactgag aacacaaaca gcactttatc 6061 tttttcctga tcatcaaaca tctcgggtgt ttgatccttt gctagactga ttctccctcc 6121 tttttaaagt tcatggcccg ggtgtggtgg ctcacaccta taatcccagc actttgagag 6181 gccgagacag gcggatcact tgaggtcagg agttcgagac cagcctggcc aacatgatga 6241 aactctgtct gtactaaaaa tacaaaaaat tagccaggtg tggtggcgca cgcctgtaat 6301 cccagctact caggaggctg aggtgagaga ctcatttgaa cccgggaggt ggaggctgca 6361 gtgagccaag atggcggcgc cactacactc cagcctgggc gacagagtga gactccgtct 6421 caaaataaat aaataaagtt cacattacac cctcattctt ctcaaaatca catattcaca 6481 aattcaggct ccagacaaat agaggcagga atgactggac tcatttcttc ctctgtaaga 6541 aggaaggggt tggggatggg agagagcctc ccttcagagt caggctgttt ataatctgcc 6601 atttgcaaca tcattattcc tcactgtgag gacagttttg ctcagaggcc ttgcaaggat 6661 ggtgtcccca attcctcatc cagtgcagac ataatcaaaa catatcacca ccgccaaggt 6721 caggttctat catgttctgg aaaagatacc tgctgagagg ccactgcctg tcaccttgcc 6781 ccacagacct catcctggaa acttctcatt tcatcttccc ttctttgacc actagatgga 6841 atattttcac ttctattcac tgaaaccctg aagggacagt tttccaaact ggacacactg 6901 cttgagaagc ccaatgctga agggaaaatg tttttccttt aattgttctg cttaccctaa 6961 ccattttcta agcacttgca tcatatgaga gtgaatgtgg aatagatgtt taggatcccc 7021 actttctgac cttcaactaa acctgtcaac aacagtgctt tatttcaaaa gggtaacctg 7081 agtattacag tgggaatccc ctgacacctt tctgcagggc cttctgctaa cttaaggcta 7141 cccttacctt cactcttgaa acctcaagcc tttcagattc ctgctcttaa agtcaacagc 7201 tggggtatga attattatgg ggcaggacca tgtactgatt ttagagcagt aactgcagac 7261 aaattgcttt cctgacaaaa tagagaattc ttcttggatg ctagtcatca ccttgacagt 7321 accatagcct gttgttacat ccagtaacag agccagctat ctcgggtgtt ggaaacatgc 7381 cacaggcaac ttagagcctg agacaccagt acaatgtgtt cagtctttcc cttgaggccc 7441 aagttcaaag aattatttag ggattcccaa aggaatggga attacagtat aagttattct 7501 gcagaaagtc aagagaaggc cataaagc //