LOCUS GPX1 4877 bp DNA linear PRI 24-JUN-2003 DEFINITION Homo sapiens glutathione peroxidase 1 (GPX1) gene, complete cds. ACCESSION GPX1 VERSION KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4877) AUTHORS Rieder,M.J., Livingston,R.J., Daniels,M.R., Chung,M.-W., Miyamoto,K.E., Nguyen,C.P., Nguyen,D.A., Poel,C.L., Robertson,P.D., Schackwitz,W.S., Sherwood,J.K., Witrak,L.A. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (24-JUN-2003) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..4877 /organism="Homo sapiens" /db_xref="taxon:9606" variation 307 /frequency="0.99" /replace="" variation 593 /frequency="0.01" /replace="T" variation 1033 /frequency="0.01" /replace="C" variation 1126 /frequency="0.16" /replace="A" variation 1169 /frequency="0.01" /replace="G" gene 1843..3265 /gene="GPX1" mRNA join(1843..2417,2697..3265) /gene="GPX1" /product="GPX1" variation 2061 /gene="GPX1" /frequency="0.01" /replace="G" variation 2120 /gene="GPX1" /frequency="0.13" /replace="T" variation 2153 /gene="GPX1" /frequency="0.01" /replace="A" CDS join(2166..2417,2697..3056) /gene="GPX1" /codon_start=1 /product="glutathione peroxidase 1" /translation="MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIEN VASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPG GGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDV AWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPSCA" variation 2179 /gene="GPX1" /frequency="0.02" /replace="C" variation 3024 /gene="GPX1" /frequency="0.02" /replace="A" variation 3043 /gene="GPX1" /frequency="0.17" /replace="T" variation 3241 /gene="GPX1" /frequency="0.01" /replace="G" misc_feature 3269..3320 /note="Region not scanned for variation" repeat_region 3307..3619 /rpt_family="Alu" /rpt_type=dispersed variation 4270 /frequency="0.01" /replace="T" repeat_region 4290..4576 /rpt_family="Alu" /rpt_type=dispersed variation 4468 /frequency="0.18" /replace="G" variation 4527 /frequency="0.01" /replace="A" variation 4610 /frequency="0.03" /replace="A" variation 4699 /frequency="0.01" /replace="T" BASE COUNT 1007 a 1309 c 1234 g 1327 t ORIGIN 1 ttacttacta tatgtatgcc acactattag ctaaaaggac tatttttttt tctttgctag 61 gagccggtga aacctgaaga aggcagagat atggcaaaca ggattggcgc ttttgggtac 121 atggagtgtt cagcaaagac caaagatgga gtgagagagg tttttgaaat ggctacgaga 181 gctgctctgc aagctagacg tgggaagaaa aaatctgggt gccttgtctt gtgaaacctt 241 gctgcaagca cagcccttat gcggttaatt ttgaagtgct gtttattaat cttagtgtat 301 gattacttgg cctttttcat ttatctataa tttacctaag attacaaatc agaagtcatc 361 ttgctaccag tatttagaag ccaactatga ttattaacga tgtccaaccc gtctggccca 421 ccagggtcct tttgacactg ctctaacagc cctcctctgc actcccacct gacacaccag 481 gcgctaattc aaggaatttc ttaacttctt gcttctttct agaaagagaa acagttggta 541 acttttgtga attaggctgt aactacttta taactaacat gtcctgccta ttatctgtca 601 gctgcaaggt actctggtga gtcaccactt cagggcttta ctccgtaaca gattttgttg 661 gcatagctct ggggtgggca gttttttgaa aatgggctca accagaaaag cccaagttca 721 tgcagctgtg gcagagttac agttctgtgg tttcatgtta gttaccttat agttactgtg 781 taattagtgc cacttaatgt atgttaccaa aaataaatat atctacccca gactagatgt 841 agtatttttt gtataattgg atttcctaat actgtcatcc tcaaagaaag tgtattggtt 901 ttttaaaaaa gaaagtgtat ttggaaataa agtcagatgg aaaattcatt ttttaaattc 961 ccgttttgtc actttttctg ataaaagatg gccatattac cccttttcgg ccccatgtat 1021 ctcagtaccc catggagctg ggctaagtaa ataggaattg gtttcacgcc tgaggcaatt 1081 agacactttg gaagatggca taacctgtct cacctggact taagcgtctg gctctaattc 1141 acagtgctct tttctcctca ctgtatccag gttccctccc agaggagcca ccagttctca 1201 tgggtggcac tcagtctctc ttctctccag ctgactaaac tttttttctg taccagttaa 1261 tttttccaac tactaataga ataaaggcag ttttctaaac ttcctgtatc ctgttgtttg 1321 tgttgctctc tccagggctg ggggtaggag gatgcaagga cttcctggcc tagctcaccc 1381 tggagaggtt tgttgagtgc aaaggactag cttgtgcccc acctcccacc cacccagcag 1441 ctaatctggt ccctcccaac aacatggaaa tgattaccct gtaccgcatt ctggttcaga 1501 tttgggggta gggtgaatgc agcctgagga ggccagggag ggaggactcc ggcagcgttt 1561 ccttggcctc ggcgagctac tgggctccac ttaaggaggc tggggcagag cttccaggac 1621 tctgcccggt tagaaaaccc gcacgagggc ggtgccgctt tggagacagg gaggagggag 1681 accggaagcc tagatccctc tggctgtccc ctgcactgcc ggtaacatgg cacaggagag 1741 gagggctgtt tgtgcacggg cagctcctgc agctgctgcc gtcgcccacc agcctcctat 1801 gccaaacccc acatcctaac tcaggaacct ctgagaaaaa acggagccct cgagggcccc 1861 agcccttgga agggtaacct ggaccgctgc cgcctggttg cctgggccag accagacatg 1921 cctgctgctc cttccggctt aggaggagca cgcgtcccgc tcgggcgcac tctccagcct 1981 tttcctggct gaggaggggc cgagccctcc gggtagggcg ggggccggat gaggcgggac 2041 cctcaggccc ggaaaactgc ctgtgccacg tgacccgccg ccggccagtt aaaaggaggc 2101 gcctgctggc ctccccttac agtgcttgtt cggggcgctc cgctggcttc ttggacaatt 2161 gcgccatgtg tgctgctcgg ctagcggcgg cggcggcggc ggcccagtcg gtgtatgcct 2221 tctcggcgcg cccgctggcc ggcggggagc ctgtgagcct gggctccctg cggggcaagg 2281 tactacttat cgagaatgtg gcgtccctct gaggcaccac ggtccgggac tacacccaga 2341 tgaacgagct gcagcggcgc ctcggacccc ggggcctggt ggtgctcggc ttcccgtgca 2401 accagtttgg gcatcaggtg cgccgggcgg agcggggcgg ggcgggggcg gacgtgcagt 2461 agtggctggg ggcgccggcg gtgtgctggt gggtgccgtc ggctccatgc gcggagagtc 2521 tggctactct ctcgtttcct ttctgttgct cgtagctgct gaaattcctc tccgcccttg 2581 ggattgcgca tggagggcaa aatcccggtg actcatagaa aatctccctt gtttgtggtt 2641 agaacgtttc tctcctcctc ttgaccccgg gttctagctg cccttctctc ctgtaggaga 2701 acgccaagaa cgaagagatt ctgaattccc tcaagtacgt ccggcctggt ggtgggttcg 2761 agcccaactt catgctcttc gagaagtgcg aggtgaacgg tgcgggggcg caccctctct 2821 tcgccttcct gcgggaggcc ctgccagctc ccagcgacga cgccaccgcg cttatgaccg 2881 accccaagct catcacctgg tctccggtgt gtcgcaacga tgttgcctgg aactttgaga 2941 agttcctggt gggccctgac ggtgtgcccc tacgcaggta cagccgccgc ttccagacca 3001 ttgacatcga gcctgacatc gaagccctgc tgtctcaagg gcccagctgt gcctagggcg 3061 cccctcctac cccggctgct tggcagttgc agtgctgctg tctcgggggg gttttcatct 3121 atgagggtgt ttcctctaaa cctacgaggg aggaacacct gatcttacag aaaataccac 3181 ctcgagatgg gtgctggtcc tgttgatccc agtctctgcc agaccaaggc gagtttcccc 3241 actaataaag tgccgggtgt cagcagaact gtgtgtatgt cctgtgtcat tgtcatttgg 3301 gaattctttt tcttttcttt tttttttttt ttttttgaga cggagttttt tgctctattg 3361 cccaggctgg agtgcagtgg cgcaatctag gctcactgca agctccgcct cccgggttca 3421 cgccattctc ctgcctcaac ctcctgagta gctgggacta caggtgcctg ccaccacgcc 3481 cggctaattt tttgtatttt tagtagagac agggtttcac cgtgttagcc aggatggtat 3541 cgatctcctg acctcgtgat ccacccgcct cggcctccca aagtgctggg attacaggta 3601 tgagccaccg cacccggcct ggcgatactt tttctaacct cattgtcata gtggtgggaa 3661 cttaatcctc cttcccttat cctagccaag tctgaacttt ctgtcctttt gtctgcagcg 3721 tgtaggatcc actctttcct ttgtgggaag tctggctcct ggcctgcatt tctgccttca 3781 ccagaacatg caaagggcca tctcaagacc cagttacaac aaagtcctta cttcaaaaaa 3841 gacacaaggc aatggttgac tgcctaactc aaatgataga cttctgacta cttgctgcac 3901 gctgaaatga ctgtcacaaa ataacatgag cccccactca catttggagt catggcctct 3961 ccaattgtta ggtccacaca atcccatttt acacggaagc tcatgcaatg ttataaattc 4021 tgttatctgg ctagatcttt ccatgttgct accaagtgcc tgtatctgct gtgacgatga 4081 tcttacaagt ttctgcctca tatattcaag agtgagaaaa ctataattta actggccctt 4141 ctgactatgc cctgcccaac acttaacgtg caattaattg cacattcagg cccaggataa 4201 gggcttgtct ttgaagccag ctgctgcttc tcgggcacca ctcaggtcca gcctctccat 4261 ctgttgaccc tgctgccaat aatctttaat tttttttttt tttttttttt ttttgagaca 4321 gtcttgctct gttgcgcagg ctggagtgca gtggtgtaat ctcggctcac tgcaagctcc 4381 gcctcccggg ttcacgccat tctgcctcag cctcccgagt agctgggact acaggcgccc 4441 gccaccacgc ccggctaatt tttttctatt ttttagtaga cggggtttca ccgtgttagc 4501 caggatggtc tcgatctcct gacctcgtga tccacccgcc ttggcctccc aaagtgctgg 4561 gattacaggc ttgagcagca ataatctttc aagacagatt tggagccatt tcctaacgca 4621 gtgcagggga ctgcagggcc tgggtgtagc ttccgcttgt gcaaacaggt acccagagac 4681 atggtagtgc tgttcacccg ctgactgtgg accagaggtt ctggagtccc agcatttgtg 4741 ttcaaattcg tgactcaagg tccttcttag tctgaaccaa ctctcaagga cttttcctct 4801 tgccctaagc agtgatcttt gctgctgctt tccccctttg tctgccctta ggtcactaag 4861 gattgtaggg ccttctg //