************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 gap43.phase.inp gap43.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST gap43.phase.out_freqs : haplotype frequency estimates gap43.phase.out_pairs : most likely haplotype pairs for each individual gap43.phase.out_recom : estimates of recombination parameters gap43.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 90 Number of Loci: 53 Positions of loci: 911 1907 2089 8490 8900 22838 23521 24339 24715 24726 25044 31215 32129 32423 32489 40003 40496 40815 40990 41349 41765 51931 51932 52030 52165 52320 52568 52832 53399 54412 54945 54963 55222 55275 59992 60140 61146 62514 62624 88176 89501 89576 89726 89864 89903 89984 90179 90204 96991 97354 98868 99127 99942 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file gap43.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 IGAGGCGGADCCCGAGGGGCICCGTTGCCCGATCCCDCTTACCAADGTCGCAC 1.000000 2 IGAGGCGGADCCTGGGGGGCICCGATACTTGACCCCDCTTACCAADGTCGCGC 1.000000 3 IGAGGCGGADCTCGAGGGGTITCATCGCCCGATCACICGAGTAAGICCCGCGC 1.000000 4 IGAGGCGGADCTCGAGGATCICCGTTGCCCGATCCCICTTACCAADGTCGCAC 1.000000 5 IGAGGTAGGDTCCGAGGGGCDCCGTTGCCCGATTCCICGTACCAADGTCATGG 1.000000 6 IGAGGTAGGDTCCGGTGGGCICCGATATCCGCTCCCICGAGTAAGICCCGCGC 1.000000 7 IGAGGTAGGDTCCGGTGGGCICCGATATCCGCTCCCICGAGTACGICCCGCGC 3.000000 8 IGAGGTAGGDTCCGGTGGGCICCGATATCCGCTCCCICGTACCAADGTAGCAG 1.000000 9 IGAGGTAGGDTCCCAGGGGCDCCGTTGCCCGATTCCICGTACCAADGTAGCAG 1.000000 10 IGAGGTAGGDTCTGGGGGGCICCGATATCCGCTCCCICGAGTAAGICCCGCGC 1.000000 11 IGAGGTAGGDTCTGGGGAGCICTGTTGCCCGCTCCCICGTACCAADGTCACGG 3.000000 12 IGAGGTAGGDTCTGGGGAGCICTGTTGCCCGATCACICGTACCAADGTAGCAG 1.000000 13 IGAGGTAGGDTTCGAGGAGCICTGTTGCCCGCTCCCICGTACCAADGTCACGG 1.000000 14 IGAGGTAGGDTTCGAGGATCICCGTTGCCCGACCCCDCTTACCAADGCAGCAG 1.000000 15 IGAGGTGGGDTCTGGGGGGCICCGATATCCGCTCCCICGAGTAAGICCCGCGC 1.000000 16 IGAGGTGGGDCCCGAGGGGCICCGATACTCTATCCTDCTAGTAAGICCCGCGC 1.000000 17 IGAGGTGGGDCCCGAGGGGCICCGTTGCCCGCTCCCICGTACCAADGTCGCAG 1.000000 18 IGAGGTGGGDCCCGAGGGGCDCCGTTGCCCGCTCCCICGTACCAADGTAGCAG 1.000000 19 IGAGGTGGGDCCCGAGGAGCICTGTTGCTCGATCCCITGTACCAADGTAGCAG 1.000000 20 IGAGGTGGGDCCCGGTGGGCICCGATATCCGCTCCCICGTACCAADGTAGCAG 1.000000 21 IGAGGTGGGDCCCGGTGGGCICCGATATCCGCTCCCICGTACCAADGTCACGG 2.000000 22 IGAGGTGGGDCCCGGTGGGCICCGATATCCGATTCCICGTACCAADGTCATGG 1.000000 23 IGAGGTGGGDCCCGGTAGGTITCATCGCCCGATCACICGTACCAADGTCGCAG 1.000000 24 IGAGGTGGGDCCCCAGGGGCITCATCGCCCGATCCCITGAGTACGICCCGCGC 1.000000 25 IGAGGTGGGDCCCCAGAGGTITCATCGCCCGATCACICGTACCAADGTAGCAG 1.000000 26 IGAGGTGGGDCCTGGGGAGCICTGTTGCCCGCTCCCICGAGTAAGICCCGCGC 1.000000 27 IGAGGTGGGICCCGAGGGGCICCGATACTTGATTCCICGTACCAADGTCGCGC 1.000000 28 IGAGGTGGGICCCGAGGGGCICCGATACTTGACCCCDCTTACCAADGTCGCAG 1.000000 29 IGAGGTGGGICCCGAGGGGCICCGATACTTGACCCCDCTTACCAADGTCGCGC 1.000000 30 IGAGGTGGGICCCGAGGGGCITCATCGCCCGATCCCITGTACCAADGTCATGG 1.000000 31 IGAGGTGGGICCCGAGGGGCDCCGTTGCCCGATTCCICGAGTAAGICCCGCGC 1.000000 32 IGAGGTGGGICCCGGTGGGCICCGATATCCGCTCCCICGAGTACGICCCGCGC 2.000000 33 IGAGGTGGGICCCGGTGGGCITCATCGCCCGCTCCCICGAGTAAGICCCGCGC 1.000000 34 IGAGGTGGGICCCGGTGGGCITCATCGCCCGATCCCITGAGTAAGICCCGCGC 3.000000 35 IGAGGTGGGICCCGGTGGGCITCATCGCCCGATCCCITGAGTACGICCCGCGC 1.000000 36 IGAGGTGGGICCCCATGGGCICCGATATCCGCTCCCICGTACCAADGTAGCAG 1.000000 37 IGAGGTGGGICCCCAGGGGCICCGATACTCTATCCTDCTTACCAADGTAGCAG 4.000000 38 IGAGGTGGGICCCCAGGGGCICCGATACTTGACCCCDCTTACCAADGTCACGG 1.000000 39 IGAGGTGGGICCCCAGGGGCITCGTTGCCTGACCCCICGAGTAAGICCCGCGC 1.000000 40 IGAGGTGGGICCCCAGGGGCITCGTTGCCTGACCACDCTAGTACGICCCGCGC 1.000000 41 IGAGGTGGGICCCCAGGGGCITCGTCGCCCGACCCCITGAGTAAGICCCGCGC 2.000000 42 IGAGGTGGGICCCCAGGGGCDCCGTTGCCCGCTCCCICGTACCAADGTAGCAG 1.000000 43 IGAGGTGGGICCCCAGAGGTITCATCGCCCGATCACICGAGTAAGICCCGCGC 1.000000 44 IGAGGTGGGICCTGGGGAGCICTGTTGCCCGCTCCCICGAGTAAGICCCGCGC 2.000000 45 IGAGGTGGGICCTGGGGAGCICTGTTGCCCGCTCCCICGTACCAADGTCACGG 3.000000 46 IGAGGTGGGICTCGAGGATCICCGTTGCCCGCTCCCICTTACCAADGTCGCGG 1.000000 47 IGAGGTGAGDCCCGAGGGGCDCCGTTGCCCGATTCCICGTACCAADGTCATGG 1.000000 48 IGAGGTGAGDCCCCAGGGGCDCCGTTGCCCGATTCCICGAGTACGICCCGCGC 1.000000 49 IGGGGCGGADTCCGATGGGCICCGATATCCGCTCCCICGAGTAAGICCCGCGC 1.000000 50 IGGGGCGGADCCCGAGGGGCITCATCGCCCGATCCCITGAGTAAGICCAGCAG 1.000000 51 IGGGGCGGADCCCCAGGGGCITCATCGCCCGATCCCITGAGTAAGICCCGCGC 2.000000 52 IGGGGCGGADCCCCAGGGGCITCATCGCCCGATCCCITGAGTAAGICCCATGG 1.000000 53 IGGGGCGGADCCTGGGGAGCICTGTTGCCCGCTCCCICGTACCAADGTCATGG 1.000000 54 IGGGGTGGGDCCCGAGGAGCICTGTTGCTCTATCCTDCTAGTAAGICCCGCGC 1.000000 55 IGGGGTGGGICCCGAGGGGCDCCGTTGCCCGATTCCICGAGTCCGICCCGCGG 1.000000 56 IGGGGTGGGICCCGAGGGGCDCCGTTGCCCGATTCCICGTACCAADGTAGCAG 1.000000 57 IGGGGTGGGICTCGAGGATCICCGTTGCCCGATCACICGTACCAADGTCATGG 1.000000 58 IAAGGTAGGDTCCGAGGGGCDCCGTTGCCCGATTCCICGAGTAAGICCCGCGC 4.000000 59 IAAGGTAGGDTCCGGTGGGCICCGATATCCGCTCCCICGAGTACGICCCGCGC 1.000000 60 IAAGGTAGGDTCCGGTGGGCICCGATATCCGCTCCCICGTACCAADGTCACGG 1.000000 61 IAAGGTAGGDTCCGGTGGGCICCGATATCCGACCCCITGAGTACGICCCGCGC 1.000000 62 IAAGGTAGGDTCCGGGGGGCICTGTTGCCCGCTCCCICGAGTACGICCCGCGC 1.000000 63 IAAGGTAGGDTTCGAGGATCICCGTTGCCCGACCCCDCTTACCAADGTAGCAG 2.000000 64 IAAGGTGGGDCCCGAGGGGCDCCGTTGCCCGATTCCICGTACCAADGTCACGG 1.000000 65 IAAGGTGGGDCCCCAGGGGCITCATCGCCCGATCCCITGAGTACGICCCGCGC 3.000000 66 IAAGGTGGGDCCCCAGGGGCITCATCGCCCGATCCCITGTACCAADGTCACGG 1.000000 67 IAAGGTGGGICCCCAGAGGTITCATCGCCCGCTCCCICGTACCAADGTAGCAG 1.000000 68 IAAGGTGGGICCCCAGAGGTITCATCGCCCGCTCCCICGTACCAADGTCGCGC 1.000000 69 IAAGGTGAGDCCCGAGGGGCDCCGTTGCCCGCTCCCICGTACCAADGTAGCAG 1.000000 70 IAAGGTGAGDCCCGGTGGGCICCGATATCCGCTCCCICGAGTAAGICCCGCGC 1.000000 71 IAAGGTGAGDCCCCATGGGCICCGATATCCGCTCCCICGTACCAADGTCACGG 3.000000 72 IAAGGTGAGDCCCCAGAGGTITCATCGCCCGATCACICGTACCAADGTAGCAG 1.000000 73 IAAAGTAGGDTCCGAGGGGCDCCGTTGCCCGCTCCCICGTACCAADGTAGCAG 1.000000 74 IAAAGTAGGDTCCGAGGGGCDCCGTTGCCTGATTCCICGAGTAAGICCCGCGC 1.000000 75 IAAAGTGGGDCCCGAGGGGCDCCGTTGCCCGATCCCDCTTACCAADGTCGCAC 1.000000 76 IAAAGTGGGDCCCGAGGGGCDCCGTTGCTCTATCCTDCTTACCAADGTAGCAG 1.000000 77 IAAAGTGGGICCCGAGGGGCICCGATACTCTATCCTDCTTACCAADGTAGCAG 1.000000 78 IAAAGTGGGICCCCAGGGGCITCGTTGCCCGATCACICGAGTAAGICCCGCAG 1.000000 79 IAAAGTGGGICCCCAGGGGCITCGTTGCCCGATCACICGAGTAAGICCCGCGC 1.000000 80 IAAAGTGGGICCCCAGGGGCITCGTTGCCTGACCCCDCTAGTAAGICCCGCGC 2.000000 81 IAAAGTGGGICCCCAGAGGTITCATCGCCCGATCACICGAGTAAGICCCGCGC 1.000000 82 IAAAGTGGGICCTGGGGAGCICTGTTGCCCGCTCCCICGAGTACGICCCGCGC 1.000000 83 IAAAGTGGGICCTGGGGAGCICTGTTGCCCGCTCCCICGTACCAADGTCACGG 2.000000 84 DGAGGCGGADCCCGAGGGGCICCGTTGCCCGATCCCDCTTACCAADGTCGCAC 1.000000 85 DGAGGCGGADCCCGAGGGGCDCCGTTGCTCGATCCCITGAGTAAGICCCGCGC 1.000000 86 DGAGGCGGADCCCGAGGAGCICTGTTGCTCGATCACICGAGTAAGICCCGCGC 1.000000 87 DGAGGCGGADCCCCAGGGGTITCATCGCCCGCTCCCICGTACCAADGTCGCGC 1.000000 88 DGAGGTAGGDTCCGATGGGCICCGATATCCGCTCCCICGAGTAAGICCCGCGC 1.000000 89 DGAGGTGGGDCCCGAGGGGCICCGATACTCTATCCTDCTAGTAAGICCCGCGC 1.000000 90 DGAGGTGGGDCCCGAGGGGCITCATCGCCCGATCCCITGAGTAAGICCCGCGC 1.000000 91 DGAGGTGGGDCCCGAGGGGCDCCGTTGCCCGATTCCICGAGTAAGICCCGCGC 1.000000 92 DGAGGTGGGDCCCGAGGGGCDCCGTTGCCCGATTCCICGTACCAADGTCATGG 2.000000 93 DGAGGTGGGDCCCGAGGGGCDCCGTTGCTCGATCCCITGAGTAAGICCCGCGC 1.000000 94 DGAGGTGGGDCCCGAGGGGCDCCGTTGCTCGATCCTDCTTACCAADGTAGCAG 1.000000 95 DGAGGTGGGDCCCGAGGGGCDCCGTTGCTCTATCCTDCTAGTACGICCCGCGC 2.000000 96 DGAGGTGGGDCCCGAGGAGCICTGTTGCTCGATCCCITGAGTACGICCCGCGC 2.000000 97 DGAGGTGGGDCCCGAGGAGCICTGTTGCTCTATCCTDCTAGTAAGICCCGCGC 1.000000 98 DGAGGTGGGDCCCGGTGGGCICCGATATCCGCTCCCICGTACCAADGTCACGG 3.000000 99 DGAGGTGGGDCCCGGGGGGCICTGTTGCCCGCTCCCICGAGTACGICCCGCGC 3.000000 100 DGAGGTGGGDCCCGGGGGGCITCGTTGCCTGACCCCDCTTACCAADGTCGCAG 1.000000 101 DGAGGTGGGDCCCCAGAGGTITCATCGCCCGATCACICGTACCAADGTAGCAG 1.000000 102 DGAGGTGGGDCCTGGGGGGCICCGATATCCGCTCCCICGTACCAADGTCACGG 1.000000 103 DGAGGTGGGDCCTGGGGAGCICTGTTGCCCGCTCCCICGAGTAAGICCCGCGC 1.000000 104 DGAGGTGGGDCCTGGGGAGCICTGTTGCCCGCTCCCICGTACCAADGTCATGG 4.000000 105 DGAGGTGGGDCTCGAGGGGCITCGTTGCCCGATTCCICGTACCAADGTCATGG 1.000000 106 DGAGGTGGGICCCGAGGGGCITCATCGCCCGATCCCITGAGTAAGICCCGCGC 2.000000 107 DGAGGTGGGICCCGAGGGGCDCCGTTGCCCGATTCCICGAGTAAGICCCGCGC 3.000000 108 DGAGGTGGGICCCGAGGGGCDCCGTTGCCCGATTCCICGTACCAADGTCATGG 1.000000 109 DGAGGTGGGICCCGAGGATCICCGTTGCCCTATCCTDCTTACCAADGTAGCAG 1.000000 110 DGAGGTGGGICCCCAGGGGCITCATCGCCCGATCCCITGAGTAAGICCCGCGC 1.000000 111 DGAGGTGGGICCTGGGGAGCICTGTTGCCCGCTCCCICGTACCAADGTAGCAG 1.000000 112 DGAGGTGGGICCTGGGGAGCICTGTTGCCCGCTCCCICGTACCAADGTCACGG 1.000000 113 DGAGGTGAGDCCCCAGAGGCICCGATATCCGCTCCCICGAGTACGICCCGCGC 1.000000 114 DGAGATAGGDTCCGGTGGGCICCGATATCCGCTCCCICGAGTACGICCCGCGC 1.000000 115 DGAGATAGGDTCCGGTGGGCDCCGTTGCCCGATTCCICGAGTAAGICCCGCGC 1.000000 116 DGAGATGGGDCTCGAGGATCICCGTTGCCCGATCACICGTACCAADGTCGCAC 1.000000 117 DGAGATGAGDCCCGAGGGGCITCGTCGCCCGACCCCITGAGTACGICCCGCGC 1.000000 118 DGAGATGAGDCCCGAGGGGCDCCGTTGCCCGCTCCCICGTACCAADGTAGCAG 4.000000 119 DGAGATGAGDCCCGAGGGGCDCCGTTGCCCGATCCCICGAGTCCGICCCGCGG 1.000000 120 DGAGATGAGDCCCGAGGGGCDCCGTTGCCCGATCCCICGTACCAADGTCACGG 1.000000 121 DGAGATGAGDCCCGAGGGGCDCCGTTGCCCGATTCCICGAGTAAGICCCGCGC 3.000000 122 DGAGATGAGDCCCGGGGGGCDCCGTTGCCCGATTCCICGTACCAADGTCATGG 1.000000 123 DGAGATGAGDCCCCAGGGGCICCGATACTCTATCCTDCTAGTAAGICCCGCGC 1.000000 124 DGAGATGAGDCCCCAGGGGCICCGATACTCTATCCTDCTTACCAADGTAGCAG 2.000000 125 DGAGATGAGDCCCCAGGGGCITCATCGCCCGATCCCICGAGTAAGICCCGCGC 1.000000 126 DGAGATGAGDCCCCAGGGGCITCATCGCCCGATCCCITGAGTAAGICCCGCGC 1.000000 127 DGAGATGAGDCCCCAGGGGCDCCGTTGCCCGATTCCICGAGTAAGICCCGCGC 1.000000 128 DGAGATGAGDCCCCAGGAGCICTGTTGCCCGCTCCCICGTACCAADGTCATGG 1.000000 129 DGAGATGAGDCCTGGGGAGCICTGTTGCCCGATTCCICGAGTAAGICCAGCAG 1.000000 130 DGGGGCGGADCCCGAGGAGCICTGTTGCCCGATTCCICGAGTAAGICCCGCGC 2.000000 131 DGGGGCGGADCCCGGTGGGCDCCGTTGCCCGATTCCICGAGTAAGICCCGCGC 1.000000 132 DGGGGTGGGICCCGAGGGGCITCATCGCCCGATCCCITGAGTAAGICCCGCGC 1.000000 133 DGGGGTGGGICCCGAGGATCICCGTTGCCCGATCACICGTACCAADGTAGCAG 1.000000 134 DAAGGTGAGDCCCGAGGGGCICTGTTGCCCGCTCCCICGAGTACGICCCGCGC 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY P001: (49,8) P002: (30,47) P003: (27,54) P004: (81,94) P005: (24,120) P006: (45,55) P007: (99,118) P008: (25,107) P009: (42,98) P010: (21,123) P011: (21,96) P012: (41,65) P013: (108,101) P014: (22,53) P015: (7,32) P016: (18,130) P017: (59,97) P018: (84,115) P019: (32,44) P020: (37,102) P021: (100,109) P022: (88,134) P023: (63,99) P024: (33,34) P025: (50,119) P026: (106,16) P027: (26,107) P028: (58,70) P029: (74,116) P030: (5,117) P031: (67,90) P032: (86,89) P033: (58,118) P034: (11,105) P035: (34,35) P036: (51,126) P037: (80,110) P038: (17,23) P039: (65,104) P040: (58,82) P041: (91,98) P042: (19,75) P043: (61,66) P044: (58,73) P045: (124,129) P046: (7,11) P047: (51,111) P048: (7,113) P049: (11,133) P050: (85,96) P051: (31,41) P052: (68,92) P053: (56,83) P054: (121,128) P055: (37,118) P056: (37,78) P057: (3,107) P058: (62,36) P059: (46,104) P060: (60,65) P061: (57,93) P062: (44,124) P063: (63,104) P064: (29,79) P065: (13,45) P066: (34,71) P067: (103,104) P068: (72,98) P069: (71,92) P070: (64,106) P071: (48,52) P072: (122,131) P073: (39,121) P074: (12,40) P075: (125,132) P076: (87,130) P077: (10,37) P078: (14,121) P079: (28,112) P080: (6,43) P081: (69,95) P082: (9,95) P083: (15,38) P084: (83,118) P085: (20,127) P086: (45,114) P087: (1,4) P088: (2,76) P089: (77,80) P090: (71,99) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 P001 I G (G) G G (C) (G) G (A) D T C C G (A) T G G G C I C C G A T A T C C G C T C C C I C G A G T A A G I C C C G C G C I [G] (A) G G (T) (A) G (G) D T C C G (G) T G G G C I C C G A T A T C C G C T C C C I C G T A C C A A D G T A G C A G 0 P002 I G A G G T G (G) G (I) C C C G A G G G G C I T C A T C G C C C G A T C C C I [T] G T A C C A A D G T C A T G G I G A G G T G (A) G (D) C C C G A G G G G C D C C G T T G C C C G A T T C C I C G T A C C A A D G T C A T G G 0 P003 I G (A) G G T G G G (I) C C C G A G G (G) G C I C (C) G (A) T (A) C T T (G) A T (T) C (C) (I) C (G) (T) (A) (C) (C) A (A) (D) (G) (T) C G C G C I G (G) G G T G G G (D) C C C G A G G (A) G C I C (T) G (T) T (G) C T C (T) A T (C) C (T) (D) C (T) (A) (G) (T) (A) A (G) (I) (C) (C) C G C G C 0 P004 (I) (A) A (A) G T G G G (I) C C C (C) A G (A) G G (T) I (T) C (A) T (C) G C (C) C G A T C (A) (C) I C (G) (A) (G) (T) (A) A (G) (I) (C) (C) (C) G C (G) (C) (D) (G) A (G) G T G G G (D) C C C (G) A G (G) G G (C) [D] (C) C (G) T (T) G C (T) C G A T C (C) (T) [D] C (T) (T) (A) (C) (C) A (A) (D) (G) (T) (A) G C (A) (G) 0 P005 (I) G A G (G) T G (G) G D C C C (C) A G G G G C (I) (T) C (A) T (C) G C C C G [A] T C C C I (T) G A G T A C G I C C C G C G C (D) G A G (A) T G (A) G D C C C (G) A G G G G C (D) (C) C (G) T (T) G C C C G [A] T [C] C C I (C) G T A C C A A D G T C A C G G 0 P006 I G (A) G G T G G G I C C T G G G G A G C I C T G T T G C C C G C T C C C I C G T A C C A A D G T C A C G G I G (G) G G T G G G I C C C G A G G G G C D C C G T T G C C C G A T T C C I C G A G T C C G I C C C G C G G 0 P007 D G A G G T G G G D C C C G G G G G G C I C T G T T G C C C G C T C C C I C G A G T A C G I C C C G C G C D G A G A T G A G D C C C G A G G G G C D C C G T T G C C C G C T C C C I C G T A C C A A D G T A G C A G 0 P008 I G A G G T G G G D C C C C A G A G G T I T C A T C G C C C G A T C A C I C G T A C C A A D G T A G C A G D G A G G T G G G I C C C G A G G G G C D C C G T T G C C C G A T T C C I C G A G T A A G I C C C G C G C 0 P009 (I) G A G G T G G G (I) C C C (C) (A) G G G G C D C C G T T G C C C G C T C C C I C G T A C C A A D G T A G C A G (D) G A G G T G G G (D) C C C (G) (G) T G G G C I C C G A T A T C C G C T C C C I C G T A C C A A D G T C A C G G 0 P010 (I) G A G G T G G G D C C C G G T G G G C I C C G A T A T C C G C T C C C I C G (T) (A) (C) (C) A (A) (D) (G) (T) C (A) C G (G) (D) G A G A T G A G D C C C C A G G G G C I C C G A T A C T C T A T C C T D C T (A) (G) (T) (A) A (G) (I) (C) (C) C (G) C G (C) 0 P011 (I) G A G G T G G G D C C C G (G) (T) G (G) G C I C (C) G (A) T (A) (T) (C) C G (C) T C C C I (C) G T A C C A A D G T C A C G G (D) G A G G T G G G D C C C G (A) (G) G (A) G C I C (T) G (T) T (G) (C) (T) C G (A) T C C C I (T) G A G T A C G I C C C G C G C 0 P012 I G A G G T G G G I C C C C A G G G G C I T C G T C G C C C G A C C C C I T G A G T A A G I C C C G C G C I A A G G T G G G D C C C C A G G G G C I T C A T C G C C C G A T C C C I T G A G T A C G I C C C G C G C 0 P013 D G A G G T G G G (I) C C C G A G G G G C D C C G T T G C C C G A T T C C I C G T A C C A A D G T C A T G G D G A G G T G G G (D) C C C C A G A G G T I T C A T C G C C C G A T C A C I C G T A C C A A D G T A G C A G 0 P014 I G (A) G G (T) G G (G) [D] C C C G G T G G G C I C C G A T A T C C G (A) T [T] C C I C G T A C C A A D G T C A T G G I G (G) G G (C) G G (A) D C C T G G G G A G C I C T G T T G C C C G (C) T C C C I C G T A C C A A D G T C A T G G 0 P015 I G A G G T A G G D T C C G G T G G G C I C C G A T A T C C G C T C C C I C G A G T A C G I C C C G C G C I G A G G T G G G I C C C G G T G G G C I C C G A T A T C C G C T C C C I C G A G T A C G I C C C G C G C 0 P016 (I) G (A) G G (T) G G (G) [D] C C C G A G G (G) G C [D] C (C) G T T G C C C G (C) T (C) C C I C G T A C C A A D G T A G C A G (D) G (G) G G (C) G G (A) D C C C G A G G (A) G C I C (T) G T T G C C C G (A) T (T) C C I C G A G T A A G I C C C G C G C 0 P017 (I) (A) A G G T (A) G G D (T) C C G G T G G G C I C C G A T A T C C G C T C C C I C G A G T A (C) G I C C C G C G C (D) (G) A G G T (G) G G D (C) C C G A G G A G C I C T G T T G C T C T A T C C T D C T A G T A (A) G I C C C G C G C 0 P018 D G A G (G) (C) (G) G (A) D (C) C C G (A) (G) G G G C I C C G T T G C C C G A T C C C D C T T A C C A A D G T C G C A C D G A G (A) (T) (A) G (G) D (T) C C G (G) (T) G G G C D C C G T T G C C C G A T T C C I C G A G T A A G I C C C G C G C 0 P019 I G A G G T G G G I C C C G G T G G G C I C C G A T A T C C G C T C C C I C G A G T A (C) G I C C C G C G C I G A G G T G G G I C C T G G G G A G C I C T G T T G C C C G C T C C C I C G A G T A (A) G I C C C G C G C 0 P020 (I) G A G G T G G G (I) C C C C A G G G G C I C C G A T A C T C T A T C C T D C T T A C C A A D G T A G C A G (D) G A G G T G G G (D) C C T G G G G G G C I C C G A T A T C C G C T C C C I C G T A C C A A D G T C A C G G 0 P021 D G A G G T G G G (D) C C C G (G) G G G G C I T C G T T G C C T G A C C C C D C T T A C C A A D G T (C) G C A G D G A G G T G G G (I) C C C G (A) G G A T C I C C G T T G C C C T A T C C T D C T T A C C A A D G T (A) G C A G 0 P022 D (G) A G G T (A) (G) G D (T) C C G A T G G G C I C C G A T A T C C G C T C C C I C G A G T A (A) G I C C C G C G C D (A) A G G T (G) (A) G D (C) C C G A G G G G C I C T G T T G C C C G C T C C C I C G A G T A (C) G I C C C G C G C 0 P023 (I) A A G G T A G G D T T C G A G G A T C I C C G T T G C C C G A C C C C D C T T A C C A A D G T A G C A G (D) G A G G T G G G D C C C G G G G G G C I C T G T T G C C C G C T C C C I C G A G T A C G I C C C G C G C 0 P024 I G A G G T G G G I C C C G G T G G G C I T C A T C G C C C G C T C C C I C G A G T A A G I C C C G C G C I G A G G T G G G I C C C G G T G G G C I T C A T C G C C C G A T C C C I T G A G T A A G I C C C G C G C 0 P025 (I) G (G) G (G) (C) G (G) (A) D C C C G A G G G G C (I) (T) C (A) T (C) G C C C G A T C C C I (T) G A G T (A) (A) G I C C (A) G C (A) G (D) G (A) G (A) (T) G (A) (G) D C C C G A G G G G C (D) (C) C (G) T (T) G C C C G A T C C C I (C) G A G T (C) (C) G I C C (C) G C (G) G 0 P026 (D) G A G G T G G G (I) C C C G A G G G G C I T C A T C G C C C G A T C C C I T G A G T A A G I C C C G C G C (I) G A G G T G G G (D) C C C G A G G G G C I C C G A T A C T C T A T C C T D C T A G T A A G I C C C G C G C 0 P027 I G A G G T G G G D C C T G G G G A G C I C T G T T G C C C G C T C C C I C G A G T A A G I C C C G C G C D G A G G T G G G I C C C G A G G G G C D C C G T T G C C C G A T T C C I C G A G T A A G I C C C G C G C 0 P028 I A A G G T (A) (G) G D (T) C C G A G G G G C D C C G T T G C C C G A T T C C I C G A G T A A G I C C C G C G C I A A G G T (G) (A) G D (C) C C G G T G G G C I C C G A T A T C C G C T C C C I C G A G T A A G I C C C G C G C 0 P029 (I) (A) A (A) (G) T (A) G G D (T) (C) C G A G G (G) (G) C (D) C C G T T G C C (T) G A T (T) (C) C I C G A G T A A G I C C C G C G C (D) (G) A (G) (A) T (G) G G D (C) (T) C G A G G (A) (T) C (I) C C G T T G C C (C) G A T (C) (A) C I C G T A C C A A D G T C G C A C 0 P030 (I) G A G (G) T (A) (G) G D [T] C C G A G G G G C (D) (C) C G T (T) G C C C G A (T) (T) C C I (C) G T A C C A A D G T C A T G G (D) G A G (A) T (G) (A) G D [C] C C G A G G G G C (I) (T) C G T (C) G C C C G A (C) (C) C C I (T) G A G T A C G I C C C G C G C 0 P031 (I) (A) A G G T G G G (I) C C C (C) A G (A) G G (T) I T C A T C G C C C G C T C C C I (C) G T A C C A A D G T (A) G C (A) (G) (D) (G) A G G T G G G (D) C C C (G) A G (G) G G (C) I T C A T C G C C C G [A] T C C C I (T) G A G T A A G I C C (C) G C (G) (C) 0 P032 D G A G G (C) G G (A) D C C C G A G G (A) G C I C (T) G (T) T (G) C T C G A T C A C I C G A G T A A G I C C C G C G C D G A G G (T) G G (G) D C C C G A G G (G) G C I C (C) G (A) T (A) C T C T A T C C T D C T A G T A A G I C C C G C G C 0 P033 [I] (A) A G (G) T (A) (G) G D (T) C C G A G G G G C D C C G T T G C C C G A T T C C I C G A G T A A G I C C C G C G C [D] (G) A G (A) T (G) (A) G D (C) C C G A G G G G C D C C G T T G C C C G C T C C C I C G T A C C A A D G T A G C A G 0 P034 (I) G A G G T (A) G G D (T) (C) (T) G (G) G G A G C I C T G T T G C C C G C T C C C I C G T A C C A A D G T C A (C) G G (D) G A G G T (G) G G D (C) (T) (C) G (A) G G G G C I T C G T T G C C C G A T T C C I C G T A C C A A D G T C A (T) G G 0 P035 I G A G G T G G G I C C C G G T G G G C I T C A T C G C C C G A T C C C I T G A G T A A G I C C C G C G C I G A G G T G G G I C C C G G T G G G C I T C A T C G C C C G A T C C C I T G A G T A C G I C C C G C G C 0 P036 I G G G G C G G A D C C C C A G G G G C I T C A T C G C C C G A T C C C I T G A G T A A G I C C C G C G C D G A G A T G A G D C C C C A G G G G C I T C A T C G C C C G A T C C C I T G A G T A A G I C C C G C G C 0 P037 (I) A A A G T G G G I C C C C A G G G G C I T C G T T G C C T G A C C C C D C T A G T A A G I C C C G C G C (D) G A G G T G G G I C C C C A G G G G C I T C A T C G C C C G A T C C C I T G A G T A A G I C C C G C G C 0 P038 I G A G G T G G G D C C C G A G G G G C I C C G T T G C C C G C T C C C I C G T A C C A A D G T C G C A G I G A G G T G G G D C C C G G T A G G T I T C A T C G C C C G A T C A C I C G T A C C A A D G T C G C A G 0 P039 I A A G G T G G G D C C C C A G G G G C I T C A T C G C C C G A T C C C I T G A G T A C G I C C C G C G C D G A G G T G G G D C C T G G G G A G C I C T G T T G C C C G C T C C C I C G T A C C A A D G T C A T G G 0 P040 I A A (G) G T (A) G G (D) (T) C C G A G G G G C D C C G T T G C C C G A T T C C I C G A G T A (A) G I C C C G C G C I A A (A) G T (G) G G (I) (C) C T G G G G A G C I C T G T T G C C C G C T C C C I C G A G T A (C) G I C C C G C G C 0 P041 D G A G G T G G G D C C C G (A) (G) G G G C (D) C C G (T) T (G) (C) C C G (A) T (T) C C I C G A G T A A G I C C C G C G C D G A G G T G G G D C C C G (G) (T) G G G C (I) C C G (A) T (A) (T) C C G (C) T (C) C C I C G T A C C A A D G T C A C G G 0 P042 I (G) A (G) G T G G G D C C C G A G G (A) G C (I) C (T) G T T G C T C G A T C C C I T G T A C C A A D G T A G C A G I (A) A (A) G T G G G D C C C G A G G (G) G C (D) C (C) G T T G C [C] C G A T C C C [D] C T T A C C A A D G T C G C A C 0 P043 I A A G G T A G G D T C C G G T G G G C I C C G A T A T C C G A C C C C I T G (A) (G) (T) (A) (C) (G) (I) (C) (C) C (G) C G (C) I A A G G T G G G D C C C C A G G G G C I T C A T C G C C C G A T C C C I T G (T) (A) (C) (C) (A) (A) (D) (G) (T) C (A) C G (G) 0 P044 I A A (G) G T A G G D T C C G A G G G G C D C C G T T G C C C G A T T C C I C G A G T A A G I C C C G C G C I A A (A) G T A G G D T C C G A G G G G C D C C G T T G C C C G C T C C C I C G T A C C A A D G T A G C A G 0 P045 D G A G A T G A G D C C C C A G G G G C I C C G A T A C T C T A T C C T D C T (T) (A) (C) (C) A (A) (D) (G) (T) A G C A G D G A G A T G A G D C C T G G G G A G C I C T G T T G C C C G A T T C C I C G (A) (G) (T) (A) A (G) (I) (C) (C) A G C A G 0 P046 I G A G G T A G G D T C C G G T G G G C I C C G A T A T C C G C T C C C I C G A G T A C G I C C C G C G C I G A G G T A G G D T C T G G G G A G C I C T G T T G C C C G C T C C C I C G T A C C A A D G T C A C G G 0 P047 (I) G (G) G G (C) G G (A) (D) C C C C A G G G G C I T C A T C G C C C G A T C C C I T G (A) (G) (T) (A) A (G) (I) (C) (C) (C) G C (G) (C) (D) G (A) G G (T) G G (G) (I) C C T G G G G A G C I C T G T T G C C C G C T C C C I C G (T) (A) (C) (C) A (A) (D) (G) (T) (A) G C (A) (G) 0 P048 (I) [G] A G G T (A) (G) G D (T) C C G G T G G G C I C C G A T A T C C G C T C C C I C G A G T A C G I C C C G C G C (D) [G] A G G T (G) (A) G D (C) C C C A G A G G C I C C G A T A T C C G C T C C C I C G A G T A C G I C C C G C G C 0 P049 (I) G (A) G G T (A) G G D (T) C T G G G G A G C I C T G T T G C C C G (C) T C (C) C I C G T A C C A A D G T (C) (A) C [G] G (D) G (G) G G T (G) G G [I] (C) C C G A G G A T C I C C G T T G C C C G (A) T C (A) C I C G T A C C A A D G T (A) (G) C A G 0 P050 D G A G G (C) G G (A) D C C C G A G G G G C D C C G T T G C T C G A T C C C I T G A G T A A G I C C C G C G C D G A G G (T) G G (G) D C C C G A G G A G C I C T G T T G C T C G A T C C C I T G A G T A C G I C C C G C G C 0 P051 I G A G G T G G G I C C C G A G G G G C D C C G T T G C C C G A T T C C I C G A G T A A G I C C C G C G C I G A G G T G G G I C C C C A G G G G C I T C G T C G C C C G A C C C C I T G A G T A A G I C C C G C G C 0 P052 (I) (A) A G G T G G G (I) C C C C A G A G G T I T C A T C G C C C G C T C C C I C G T A C C A A D G T C (G) (C) G (C) (D) (G) A G G T G G G (D) C C C G A G G G G C D C C G T T G C C C G A T T C C I C G T A C C A A D G T C (A) (T) G (G) 0 P053 I (G) (G) (G) G T G G G I C C C G A G G G G C D C C G T T G C C C G A T T C C I C G T A C C A A D G T (A) (G) C (A) G I (A) (A) (A) G T G G G I C C T G G G G A G C I C T G T T G C C C G C T C C C I C G T A C C A A D G T (C) (A) C (G) G 0 P054 D G A G A T G A G D C C C (G) A G G (G) G C [D] C (C) G T T G C C C G (A) T (T) C C I C G A G T A A G I C C C G C G C D G A G A T G A G D C C C (C) A G G (A) G C [I] C (T) G T T G C C C G (C) T (C) C C I C G T A C C A A D G T C A T G G 0 P055 (I) G A G (G) T G (G) G (I) C C C C A G G G G C I C C G A T A C T C T A T C C T D C T T A C C A A D G T A G C A G (D) G A G (A) T G (A) G (D) C C C G A G G G G C D C C G T T G C C C G C T C C C I C G T A C C A A D G T A G C A G 0 P056 I G A G G T G G G I C C C C A G G G G C I C C G A T A C T C T A T C C T D C T (T) (A) (C) (C) A (A) (D) (G) (T) A G C A G I A A A G T G G G I C C C C A G G G G C I T C G T T G C C C G A T C A C I C G (A) (G) (T) (A) A (G) (I) (C) (C) C G C A G 0 P057 (I) G A G G (C) G G (A) (D) C T C G A G G G G T I T C A T C G C C C G A T C A C I C G A G T A A G I C C C G C G C (D) G A G G (T) G G (G) (I) C C C G A G G G G C D C C G T T G C C C G A T T C C I C G A G T A A G I C C C G C G C 0 P058 I (A) A G G T (A) G G (D) (T) C C (G) (G) (G) G G G C I C (T) G (T) T (G) (C) C C G C T C C C I C G A G T A C G I C C C G C G C I (G) A G G T (G) G G (I) (C) C C (C) (A) (T) G G G C I C (C) G (A) T (A) (T) C C G C T C C C I C G T A C C A A D G T A G C A G 0 P059 (I) G A G G T G G G (I) C T C G A G G A T C I C C G T T G C C C G C T C C C I C (T) T A C C A A D G T C (G) (C) G G (D) G A G G T G G G (D) C C T G G G G A G C I C T G T T G C C C G C T C C C I C (G) T A C C A A D G T C (A) (T) G G 0 P060 I A A G G T A G G D T C C G G T G G G C I C C G A T A T C C G C T C C C I C G (T) (A) (C) (C) (A) (A) (D) (G) (T) C (A) C G (G) I A A G G T G G G D C C C C A G G G G C I T C A T C G C C C G A T C C C I T G (A) (G) (T) (A) (C) (G) (I) (C) (C) C (G) C G (C) 0 P061 (I) G (G) G G T G G G (I) C (T) C G A G G [A] (T) C I C C G T T G C (C) C G A T C (A) C I (C) G (T) (A) (C) (C) A (A) (D) (G) (T) C (A) (T) G (G) (D) G (A) G G T G G G (D) C (C) C G A G G G (G) C [D] C C G T T G C (T) C G A T C (C) C I (T) G (A) (G) (T) (A) A (G) (I) (C) (C) C (G) (C) G (C) 0 P062 [I] G A G (G) T G (G) G (I) C C T G G G G A G C I C T G T T G C C C G C T C C C I C G (A) (G) (T) (A) A (G) (I) (C) (C) (C) G C (G) (C) [D] G A G (A) T G (A) G (D) C C C C A G G G G C I C C G A T A C T C T A T C C T D C T (T) (A) (C) (C) A (A) (D) (G) (T) (A) G C (A) (G) 0 P063 (I) A A G G T A G G D T T C G A G G A T C I C C G T T G C C C G A C C C C D C T T A C C A A D G T A G C A G (D) G A G G T G G G D C C T G G G G A G C I C T G T T G C C C G C T C C C I C G T A C C A A D G T C A T G G 0 P064 I G A G G T G G G I C C C G A G G G G C I C C G A T A C T (T) G A (C) C (C) C (D) C (T) T A C C A A D G T C G C G C I A A A G T G G G I C C C C A G G G G C I T C G T T G C C (C) G A (T) C (A) C (I) C (G) A G T A A G I C C C G C G C 0 P065 I [G] A G G T (A) G G (D) (T) T C G A G G A G C I C T G T T G C C C G C T C C C I C G T A C C A A D G T C A C G G I G A G G T (G) G G (I) (C) C T G G G G A G C I C T G T T G C C C G C T C C C I C G T A C C A A D G T C A C G G 0 P066 I G A G G T G G G I C C C G G T G G G C I T C A T C G C C C G A T C C C I T G A G T A A G I C C C G C G C I A A G G T G A G D C C C C A T G G G C I C C G A T A T C C G C T C C C I C G T A C C A A D G T C A C G G 0 P067 D G A G G T G G G D C C T G G G G A G C I C T G T T G C C C G C T C C C I C G A G T A A G I C C C G C G C D G A G G T G G G D C C T G G G G A G C I C T G T T G C C C G C T C C C I C G T A C C A A D G T C A T G G 0 P068 (I) (A) A G G T G (A) G D C C C C A G A G G T I T C A T C G C C C G A T C A C I C G T A C C A A D G T A G C A G (D) (G) A G G T G (G) G D C C C G G T G G G C I C C G A T A T C C G C T C C C I C G T A C C A A D G T C A C G G 0 P069 I A A G G T G A G D C C C C A T G G G C I C C G A T A T C C G C T C C C I C G T A C C A A D G T C A C G G D G A G G T G G G D C C C G A G G G G C D C C G T T G C C C G A T T C C I C G T A C C A A D G T C A T G G 0 P070 (I) (A) A G G T G G G (D) C C C G A G G G G C (D) (C) C (G) T (T) G C C C G A T (T) C C I (C) G T A C C A A D G T C A C G G (D) (G) A G G T G G G (I) C C C G A G G G G C (I) (T) C (A) T (C) G C C C G A T (C) C C I (T) G A G T A A G I C C C G C G C 0 P071 I G (A) G G (T) G (A) (G) D C C C C A G G G G C D C C G T T G C C C G A T T C C I C G A G T A (C) G I C C C (G) (C) G (C) I G (G) G G (C) G (G) (A) D C C C C A G G G G C I T C A T C G C C C G A T C C C I T G A G T A (A) G I C C C (A) (T) G (G) 0 P072 D G (A) G (A) (T) G (A) (G) D C C C G G (G) G G G C D C C G T T G C C C G A T T C C I C G T A C C A A D G T C A T G G D G (G) G (G) (C) G (G) (A) D C C C G G (T) G G G C D C C G T T G C C C G A T T C C I C G A G T A A G I C C C G C G C 0 P073 (I) G A G (G) T G (G) G (I) C C C C A G G G G C I T C G T T G C C T G A C C C C I C G A G T A A G I C C C G C G C (D) G A G (A) T G (A) G (D) C C C G A G G G G C D C C G T T G C C C G A T T C C I C G A G T A A G I C C C G C G C 0 P074 I G A G G T (A) G G (D) (T) C (T) (G) (G) G G (A) G C I C [T] G T T G C C (C) G A (T) C A C I C (G) T A C C A A D G T A G C A G I G A G G T (G) G G (I) (C) C (C) (C) (A) G G (G) G C I [T] C G T T G C C (T) G A (C) C A C [D] C (T) A G T A C G I C C C G C G C 0 P075 D G (A) G A T G A G D C C C (C) A G G G G C I T C A T C G C C C G A T C C C I (C) G A G T A A G I C C C G C G C D G (G) G G T G G G I C C C (G) A G G G G C I T C A T C G C C C G A T C C C I (T) G A G T A A G I C C C G C G C 0 P076 D G (A) G G C G G A D C C C (C) A G G G G T I T C A T C G C C C G (C) T (C) C C I C G T A C C A A D G T C G C G C D G (G) G G C G G A D C C C (G) A G G A G C I C T G T T G C C C G (A) T (T) C C I C G A G T A A G I C C C G C G C 0 P077 I G A G G T (A) G G (D) (T) C (T) (G) (G) G G G G C I C C G A T A T C C G C T C C C I C G A G T A A G I C C C G C G C I G A G G T (G) G G (I) (C) C (C) (C) (A) G G G G C I C C G A T A C T C T A T C C T D C T T A C C A A D G T A G C A G 0 P078 (I) G A G (G) T (A) (G) G D (T) T C G A G G A T C I C C G T T G C C C G A C C C C D C T T A C C A A D G C A G C A G (D) G A G (A) T (G) (A) G D (C) C C G A G G G G C D C C G T T G C C C G A T T C C I C G A G T A A G I C C C G C G C 0 P079 (I) G A G G T G G G I C C C G A G G G G C I C C G A T A C T T G A C C C C D C T T A C C A A D G T C (G) C (A) G (D) G A G G T G G G I C C T G G G G A G C I C T G T T G C C C G C T C C C I C G T A C C A A D G T C (A) C (G) G 0 P080 I G A G G T (A) G G (D) (T) C C G G T G G G C I C C G A T A T C C G C T C C C I C G A G T A A G I C C C G C G C I G A G G T (G) G G (I) (C) C C C A G A G G T I T C A T C G C C C G A T C A C I C G A G T A A G I C C C G C G C 0 P081 (I) (A) A G G T G (A) G D C C C G A G G G G C D C C G T T G C (C) C (G) (C) T C C [C] [I] C [G] T A C C A A D G T A G C A G (D) (G) A G G T G (G) G D C C C G A G G G G C D C C G T T G C (T) C (T) (A) T C C [T] [D] C [T] A G T A C G I C C C G C G C 0 P082 (I) G A G G T (A) G G D (T) C C (C) A G G G G C D C C G T T G C [C] C (G) A T [T] C (C) [I] C (G) (T) (A) (C) (C) (A) (A) (D) (G) (T) (A) G C (A) (G) (D) G A G G T (G) G G D (C) C C (G) A G G G G C D C C G T T G C [T] C (T) A T [C] C (T) [D] C (T) (A) (G) (T) (A) (C) (G) (I) (C) (C) (C) G C (G) (C) 0 P083 I G A G G T G G G (D) (T) C (T) (G) (G) G G G G C I C C G A T A (T) (C) (C) G (C) (T) C C C (I) C (G) A (G) (T) (A) A (G) (I) (C) (C) C (G) C G (C) I G A G G T G G G (I) (C) C (C) (C) (A) G G G G C I C C G A T A (C) (T) (T) G (A) (C) C C C (D) C (T) [T] (A) (C) (C) A (A) (D) (G) (T) C (A) C G (G) 0 P084 I A A A G T G G G I C C T G G G G A G C I C T G T T G C C C G C T C C C I C G T A C C A A D G T C A C G G D G A G A T G A G D C C C G A G G G G C D C C G T T G C C C G C T C C C I C G T A C C A A D G T A G C A G 0 P085 (I) G A G (G) T G (G) G D C C C (G) (G) (T) G G G C (I) C C G (A) T (A) (T) C C G (C) T (C) C C I C G T A C C A A D G T A G C A G (D) G A G (A) T G (A) G D C C C (C) (A) (G) G G G C (D) C C G (T) T (G) (C) C C G (A) T (T) C C I C G A G T A A G I C C C G C G C 0 P086 [I] G A G (G) T (G) G G (I) (C) C T G G G G A G C I C T G T T G C C C G C T C C C I C G T A C C A A D G T C A C G G [D] G A G (A) T (A) G G (D) (T) C C G G T G G G C I C C G A T A T C C G C T C C C I C G A G T A C G I C C C G C G C 0 P087 I G A G G C G G A D C C C G A G G G G C I C C G T T G C C C G A T C C C D C T T A C C A A D G T C G C A C I G A G G C G G A D C T C G A G G A T C I C C G T T G C C C G A [T] C C C I C T T A C C A A D G T C G C A C 0 P088 I [G] A (G) G (C) G G (A) D C C (T) G (G) G G G G C I C C G A T A C T T G A C C C C D C T T A C C A A D G T (C) G C (G) (C) I [A] A (A) G (T) G G (G) D C C (C) G (A) G G G G C D C C G T T G C T C T A T C C T D C T T A C C A A D G T (A) G C (A) (G) 0 P089 I A A A G T G G G [I] C C C G A G G G G C I C C G A T A C T C T A T C C T D C T T A C C A A D G T A G C A G I A A A G T G G G I C C C C A G G G G C I T C G T T G C C T G A C C C C D C T A G T A A G I C C C G C G C 0 P090 I A A G G T G A G D C C C C A T G G G C I C C G A T A T C C G C T C C C I C G T A C C A A D G T C A C G G D G A G G T G G G D C C C G G G G G G C I C T G T T G C C C G C T C C C I C G A G T A C G I C C C G C G C END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 P001 = ? (G) = = (C) (G) = (A) = = = = = (A) = = = = = = = = = = = = ? = = = = = ? = = = = = A G T A = G I C C C = = G C = ? (A) = = (T) (A) = (G) = = = = = (G) = = = = = = = = = = = = ? = = = = = ? = = = = = T A C C = A D G T A = = A G 0 P002 = = = = = = = (G) = (I) = = = = = = = = = = I T = A = C = ? = = = = = ? = = = ? = = = = = = = = = = = = = = = = = = = = = = (A) = (D) = = = = = = = = = = D C = G = T = ? = = = = = ? = = = ? = = = = = = = = = = = = = = = 0 P003 = = (A) = = = = = = (I) = = = = = = = (G) = = = = (C) = (A) = (A) = = T (G) = = (T) = (C) (I) = (G) (T) (A) (C) (C) = (A) (D) (G) (T) = = = = = = = (G) = = = = = = (D) = = = = = = = (A) = = = = (T) = (T) = (G) = = C (T) = = (C) = (T) (D) = (T) (A) (G) (T) (A) = (G) (I) (C) (C) = = = = = 0 P004 (I) (A) = (A) = = = = = (I) = = = (C) = = (A) = = (T) ? (T) = (A) = (C) = ? (C) = = = = = (A) (C) ? = (G) (A) (G) (T) (A) = (G) (I) (C) (C) (C) = = (G) (C) (D) (G) = (G) = = = = = (D) = = = (G) = = (G) = = (C) ? (C) = (G) = (T) = ? (T) = = = = = (C) (T) ? = (T) (T) (A) (C) (C) = (A) (D) (G) (T) (A) = = (A) (G) 0 P005 (I) = = = (G) = = (G) = = = = = (C) = = = = = = (I) (T) = (A) = (C) = ? = = ? ? ? ? = = = (T) = A G T A C G I C C = G = ? C (D) = = = (A) = = (A) = = = = = (G) = = = = = = (D) (C) = (G) = (T) = ? = = ? ? ? ? = = = (C) = T A C C A A D G T = A = ? G 0 P006 = = (A) = = = = = = = = = T = G = = A = = ? = T = = = = = = = = C = C = = = = = T A C = A A D G T = A = = = = = (G) = = = = = = = = = C = A = = G = = ? = C = = = = = = = = A = T = = = = = A G T = C G I C C = G = = = 0 P007 = = = = G = = G = = = = = = G = = = = = ? = T = = = = ? = = = = = = = = = = = A G T A C G I C C C = = G C = = = = A = = A = = = = = = A = = = = = ? = C = = = = ? = = = = = = = = = = = T A C C A A D G T A = = A G 0 P008 I = = = = = = = = D = = = C = ? A = = T ? T = A = C = ? = = ? = ? ? A = = ? ? T A C C = A D G T A = = A G D = = = = = = = = I = = = G = ? G = = C ? C = G = T = ? = = ? = ? ? C = = ? ? A G T A = G I C C C = = G C 0 P009 (I) = = = = = = = = (I) = = = (C) (A) G = = = = D = = = T = G C = = = = = = = = = = = = = = = = = = = = A G = A = (D) = = = = = = = = (D) = = = (G) (G) T = = = = I = = = A = A T = = = = = = = = = = = = = = = = = = = = C A = G = 0 P010 (I) = = = G = = G = = = = = G G T = = = = = = = = = = = ? C = G C = = = C I = G (T) (A) (C) (C) = (A) (D) (G) (T) = (A) = = (G) (D) = = = A = = A = = = = = C A G = = = = = = = = = = = ? T = T A = = = T D = T (A) (G) (T) (A) = (G) (I) (C) (C) = (G) = = (C) 0 P011 (I) = = = = = = = = = = = = = (G) (T) = (G) = = = = (C) = (A) = (A) (T) (C) = = (C) = = = = = (C) = T A C C A A D G T = A = = G (D) = = = = = = = = = = = = = (A) (G) = (A) = = = = (T) = (T) = (G) (C) (T) = = (A) = = = = = (T) = A G T A C G I C C = G = = C 0 P012 = G = = = = = = = I = = = = = = = = = = = = = G = = = = = = = = C = = = = = = = = = = A = = = = = = = = = = A = = = = = = = D = = = = = = = = = = = = = A = = = = = = = = T = = = = = = = = = = C = = = = = = = = = 0 P013 = = = = = = = = = (I) = = = G = = G = = C D C = G = T = = = = ? ? = T C = = = = = = = = = = = = = C A T G = = = = = = = = = = (D) = = = C = = A = = T I T = A = C = = = = ? ? = C A = = = = = = = = = = = = = A G C A = 0 P014 = = (A) = = (T) = = (G) ? = = C = = T = G = = = = C = A = A T = = = (A) = ? = = = = = = = = = = = = = = = = = = = = = (G) = = (C) = = (A) ? = = T = = G = A = = = = T = T = G C = = = (C) = ? = = = = = = = = = = = = = = = = = = = 0 P015 = = = = = = A = = D T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = I C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P016 (I) ? (A) = = (T) = = (G) ? = = = = = = = (G) = = ? = (C) = = = = = = = = (C) = (C) = = ? = = ? ? ? ? ? ? ? ? ? A = = A G (D) ? (G) = = (C) = = (A) ? = = = = = = = (A) = = ? = (T) = = = = = = = = (A) = (T) = = ? = = ? ? ? ? ? ? ? ? ? C = = G C 0 P017 (I) (A) = = = = (A) = = = (T) = = = G T = G = = = = C = A = A T C = G C = = = C I = G = = = = (C) = = = = = = = = = (D) (G) = = = = (G) = = = (C) = = = A G = A = = = = T = T = G C T = T A = = = T D = T = = = = (A) = = = = = = = = = 0 P018 = = = ? (G) (C) (G) = (A) = (C) = = = (A) (G) = = = = I = = = = = = = = = = = = C = = D = T T A C C = A D G T = = = A = = = = ? (A) (T) (A) = (G) = (T) = = = (G) (T) = = = = D = = = = = = = = = = = = T = = I = G A G T A = G I C C = = = G = 0 P019 = = = = = = = = = = = = C = = T = G = = = = C = A = A T = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = T = = G = A = = = = T = T = G C = = = = = = = = = = = = = = = (A) = = = = = = = = = 0 P020 (I) = = = = = = = = (I) = = C C A = = = = = = = = = = = = C T = T A = = = T D = T = = = = = = = ? ? A G = A = (D) = = = = = = = = (D) = = T G G = = = = = = = = = = = = T C = G C = = = C I = G = = = = = = = ? ? C A = G = 0 P021 = = = ? = = = = = (D) = = = = (G) = = G G = = T = = = = ? ? = T G = C = = C = = = = = = = = = = = = (C) = = = = = = = ? = = = = = (I) = = = = (A) = = A T = = C = = = = ? ? = C T = T = = T = = = = = = = = = = = = (A) = = = = 0 P022 = (G) = = = = (A) (G) = = (T) = = = = T = = = = = = C = A = A T = = = = = = = = = = = = = = = (A) = = = = = = = = = = (A) = = = = (G) (A) = = (C) = = = = G = = = = = = T = T = G C = = = = = = = = = = = = = = = (C) = = = = = = = = = 0 P023 (I) A = = = = A = = = T T = = A = = A T = = = C = = = = = = = = A C = = = ? = T T A C C A A D G T A = = A G (D) G = = = = G = = = C C = = G = = G G = = = T = = = = = = = = C T = = = ? = G A G T A C G I C C C = = G C 0 P024 = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = ? C = = = = = = = = = = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = = = ? T = = = = = = = = = = = = = = ? 0 P025 (I) ? (G) = (G) (C) = (G) (A) = = = = = = = = = = = (I) (T) = (A) = (C) = = = = = = = = = = = (T) = = = = (A) (A) = = = = (A) = = (A) = (D) ? (A) = (A) (T) = (A) (G) = = = = = = = = = = = (D) (C) = (G) = (T) = = = = = = = = = = = (C) = = = = (C) (C) = = = = (C) = = (G) = 0 P026 (D) = = = = = = = = (I) = = = = = = = = = = = T = A T C G = C = G = = = = C I T G = = = = = = = = = = = = = = (I) = = = = = = = = (D) = = = = = = = = = = = C = G A T A = T = T = = = = T D C T = = = = = = = = = = = = = = 0 P027 I = = = = = = = = D = = T = G = = A = = ? = T = = = = = = = = C = C = = = = = = = = = = = = = = = ? = = = D = = = = = = = = I = = C = A = = G = = ? = C = = = = = = = = A = T = = = = = = = = = = = = = = = ? = = = 0 P028 = = = = = = (A) (G) = = (T) = = = A G = = = = D = = = T = G C = = = A = T = = = = = = = = = = = = = = = = = = = = = = = = = (G) (A) = = (C) = = = G T = = = = I = = = A = A T = = = C = C = = = = = = = = = = = = = = = = = = = 0 P029 (I) (A) = (A) (G) = (A) = = = (T) (C) = = = = = (G) (G) = (D) = = = ? = = = = (T) = = = (T) (C) = = = = A G T A = G I C C = = = G = (D) (G) = (G) (A) = (G) = = = (C) (T) = = = = = (A) (T) = (I) = = = ? = = = = (C) = = = (C) (A) = = = = T A C C = A D G T = = = A = 0 P030 (I) = = = (G) = (A) (G) = = ? = = = = = = = = = (D) (C) = = = (T) = ? ? = = = (T) (T) = = ? (C) = T A C C A A D G T = A T = G (D) = = = (A) = (G) (A) = = ? = = = = = = = = = (I) (T) = = = (C) = ? ? = = = (C) (C) = = ? (T) = A G T A C G I C C = G C = C 0 P031 (I) (A) = = = = = = = (I) = = = (C) = = (A) = = (T) = = = = = = = = = = ? ? = ? = = = (C) = T A C C = A D G T (A) = = (A) (G) (D) (G) = = = = = = = (D) = = = (G) = = (G) = = (C) = = = = = = = = = = ? ? = ? = = = (T) = A G T A = G I C C (C) = = (G) (C) 0 P032 = ? = = = (C) = = (A) = = = = = = = ? (A) = = = = (T) = (T) = (G) = = = G = = ? A C I = G = = = = = = = = = = = = = = = ? = = = (T) = = (G) = = = = = = = ? (G) = = = = (C) = (A) = (A) = = = T = = ? C T D = T = = = = = = = = = = = = = = 0 P033 ? (A) = = (G) = (A) (G) = = (T) = = = = = = = = = = = = = = = = = ? = = A = T = = ? = = A G T A = G I C C C = = G C ? (G) = = (A) = (G) (A) = = (C) = = = = = = = = = = = = = = = = = ? = = C = C = = ? = = T A C C = A D G T A = = A G 0 P034 (I) = = = = = (A) = = = (T) (C) (T) = (G) = ? A = ? = C T = = = = = = = = C = C = = = = = = = = = = = = = = = = (C) = = (D) = = = = = (G) = = = (C) (T) (C) = (A) = ? G = ? = T C = = = = = = = = A = T = = = = = = = = = = = = = = = = (T) = = 0 P035 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = 0 P036 I = G = G C = G A = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = D = A = A T = A G = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = 0 P037 (I) A = A = = = = = = = = = = = = = = = = ? = = G = T = = = T = = C = = = D C T = = = = = = = = ? = = = = = (D) G = G = = = = = = = = = = = = = = = = ? = = A = C = = = C = = T = = = I T G = = = = = = = = ? = = = = = 0 P038 = = = = = = = = = = = = = = A G G = = C = C = G = T = = = = = C = ? C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G T A = = T = T = A = C = = = = = A = ? A = = = = = = = = = = = = = = = = = = 0 P039 I A = = = = = = = = = = C C A = = G = = = T C A = C = = = = = A = = = = = T = A G T A C G I C C = G C = C D G = = = = = = = = = = T G G = = A = = = C T G = T = = = = = C = = = = = C = T A C C A A D G T = A T = G 0 P040 = = = (G) = = (A) = = (D) (T) = C = A = = G = = ? = C = = = = = = = = A = T = = = = = = = = = (A) = = = = ? = = = = = = = (A) = = (G) = = (I) (C) = T = G = = A = = ? = T = = = = = = = = C = C = = = = = = = = = (C) = = = = ? = = = = 0 P041 = = = = = = = = = = = = = = (A) (G) = = = = (D) = = = (T) = (G) (C) = = = (A) = (T) = = = = = A G T A = G I C C = G = = C = = = = = = = = = = = = = = (G) (T) = = = = (I) = = = (A) = (A) (T) = = = (C) = (C) = = = = = T A C C = A D G T = A = = G 0 P042 = (G) = (G) = = = = = = = = = = = = = (A) = = (I) = (T) = = = = = ? = = = = = = = ? T G = = = = = = = = = A ? = = G = (A) = (A) = = = = = = = = = = = = = (G) = = (D) = (C) = = = = = ? = = = = = = = ? C T = = = = = = = = = C ? = = C 0 P043 = = = = = = A = = = T = = G G T = = = = = C = G A T A T = = = = C = = = = = = (A) (G) (T) (A) (C) (G) (I) (C) (C) = (G) = = (C) = = = = = = G = = = C = = C A G = = = = = T = A T C G C = = = = T = = = = = = (T) (A) (C) (C) (A) (A) (D) (G) (T) = (A) = = (G) 0 P044 = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = A = T = = = = = A G T A = G I C C C ? = G C = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = C = C = = = = = T A C C = A D G T A ? = A G 0 P045 = = = = = = = = = = = = C C A = = G = = = = C = A = A = T = T = = C = T D = T (T) (A) (C) (C) = (A) (D) (G) (T) = = = = = = = = = = = = = = = = = T G G = = A = = = = T = T = G = C = G = = T = C I = G (A) (G) (T) (A) = (G) (I) (C) (C) = = = = = 0 P046 = = = = = = = = = = = = C = = T = G = = = = C = A = A T = = = = = = = = ? ? = A G T A C G I C C = G = = C = = = = = = = = = = = = T = = G = A = = = = T = T = G C = = = = = = = = ? ? = T A C C A A D G T = A = = G 0 P047 (I) = (G) = = (C) = = (A) (D) = = C C A = = G = = = T C A = C = = = = = A = = = = = T = (A) (G) (T) (A) = (G) (I) (C) (C) (C) = = (G) (C) (D) = (A) = = (T) = = (G) (I) = = T G G = = A = = = C T G = T = = = = = C = = = = = C = (T) (A) (C) (C) = (A) (D) (G) (T) (A) = = (A) (G) 0 P048 (I) ? = = = = (A) (G) = = (T) = = G G T G = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = (D) ? = = = = (G) (A) = = (C) = = C A G A = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = 0 P049 (I) = (A) ? = = (A) = ? ? (T) = T = G = = = G = = = T = = = = = ? = = (C) = = (C) = = = = = = = = = = = = = (C) (A) = ? = (D) = (G) ? = = (G) = ? ? (C) = C = A = = = T = = = C = = = = = ? = = (A) = = (A) = = = = = = = = = = = = = (A) (G) = ? = 0 P050 = = = = = (C) = = (A) = = = = = = = = G = = ? = C = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = (T) = = (G) = = = = = = = = A = = ? = T = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = 0 P051 = = = = = = = = = = = = = G = = = = = = D C = = = T = = = = = = T T = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = I T = = = C = = = = = = C C = = = T = = = = = = = = = = = = = = = 0 P052 (I) (A) = = = = = = = (I) = = = C = = A = = T I T = A = C = = = = = C = C = = = = = = = = = = = = = = = (G) (C) = (C) (D) (G) = = = = = = = (D) = = = G = = G = = C D C = G = T = = = = = A = T = = = = = = = = = = = = = = = (A) (T) = (G) 0 P053 = (G) (G) (G) = = = = = = = = C = A = = G = = ? = C = = = = = = = = A = T = = ? = = = = = = = = = = = (A) (G) = (A) = = (A) (A) (A) = = = = = = = = T = G = = A = = ? = T = = = = = = = = C = C = = ? = = = = = = = = = = = (C) (A) = (G) = 0 P054 = = = = = = = = = = = = = (G) = = = (G) = = ? = (C) = = = = = ? = = (A) = (T) = = = ? = A G T A = G I C C = G C = C = = = = = = = = = = = = = (C) = = = (A) = = ? = (T) = = = = = ? = = (C) = (C) = = = ? = T A C C = A D G T = A T = G 0 P055 (I) = = = (G) = = (G) = (I) = = = C = = = = = = I = = = A = A = T = T A = = = T D = T = = = = = = = = = = = = = = (D) = = = (A) = = (A) = (D) = = = G = = = = = = D = = = T = G = C = G C = = = C I = G = = = = = = = = = = = = = = 0 P056 ? G = G = = = = = = = = = = = = = = = = = C = = A = A = T = T = = = C T ? = T (T) (A) (C) (C) = (A) (D) (G) (T) A = = = = ? A = A = = = = = = = = = = = = = = = = = T = = T = G = C = G = = = A C ? = G (A) (G) (T) (A) = (G) (I) (C) (C) C = = = = 0 P057 (I) = = = = (C) = = (A) (D) = T = = = = = = = T I T = A = C = = = = = = = ? A = = = = = = = = = = = = = = = = = = (D) = = = = (T) = = (G) (I) = C = = = = = = = C D C = G = T = = = = = = = ? C = = = = = = = = = = = = = = = = = = 0 P058 = (A) = = = = (A) = = (D) (T) = = (G) (G) (G) = = = = = = (T) = (T) = (G) (C) = = = = = = = = = = = A G T A C G I C C C ? = G C = (G) = = = = (G) = = (I) (C) = = (C) (A) (T) = = = = = = (C) = (A) = (A) (T) = = = = = = = = = = = T A C C A A D G T A ? = A G 0 P059 (I) = = = = = = = = (I) = T C = A = = = T = = = C = = = = = = = = = = ? = = = = (T) = = = = = = = = = = (G) (C) = = (D) = = = = = = = = (D) = C T = G = = = G = = = T = = = = = = = = = = ? = = = = (G) = = = = = = = = = = (A) (T) = = 0 P060 = = = = = = A = = = T = = G G T = = = = = C = G A T A T = = = C = = = = ? C = (T) (A) (C) (C) (A) (A) (D) (G) (T) = (A) = = (G) = = = = = = G = = = C = = C A G = = = = = T = A T C G C = = = A = = = = ? T = (A) (G) (T) (A) (C) (G) (I) (C) (C) = (G) = = (C) 0 P061 (I) = (G) = = = = = = (I) = (T) = = = = = ? (T) ? ? = = = = = = = (C) = = = = = (A) = = (C) = (T) (A) (C) (C) = (A) (D) (G) (T) = (A) (T) = (G) (D) = (A) = = = = = = (D) = (C) = = = = = ? (G) ? ? = = = = = = = (T) = = = = = (C) = = (T) = (A) (G) (T) (A) = (G) (I) (C) (C) = (G) (C) = (C) 0 P062 ? = = = (G) = = (G) = (I) = = T G G = = A = = = = T = T = G = C = G C = = = C ? = G (A) (G) (T) (A) = (G) (I) (C) (C) (C) = = (G) (C) ? = = = (A) = = (A) = (D) = = C C A = = G = = = = C = A = A = T = T A = = = T ? = T (T) (A) (C) (C) = (A) (D) (G) (T) (A) = = (A) (G) 0 P063 (I) A = = = = A = = = T T C = A = = = T = = = C = = = = = = = = A C = = = D = T = = = = = = = = = A G C A = (D) G = = = = G = = = C C T = G = = = G = = = T = = = = = = = = C T = = = I = G = = = = = = = = = C A T G = 0 P064 = ? = G = = = = = = = = = G = = = = = = ? C = = A = A = T (T) = = (C) = (C) = (D) = (T) T A C C = A D G ? = ? = = = = ? = A = = = = = = = = = C = = = = = = ? T = = T = G = C (C) = = (T) = (A) = (I) = (G) A G T A = G I C ? = ? = = = 0 P065 = ? = = = = (A) = = (D) (T) T C = A = = = ? = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = ? = = ? = = = = (G) = = (I) (C) C T = G = = = ? = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = ? = 0 P066 = G = = = = = G = I = = = G G = = = = = = T = A T C G C = = = A = = = = = T = A G T A = G I C C = G = = C = A = = = = = A = D = = = C A = = = = = = C = G A T A T = = = C = = = = = C = T A C C = A D G T = A = = G 0 P067 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A G T A = G I C C = G C = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T A C C = A D G T = A T = G 0 P068 (I) (A) = = = = = (A) = = = = = C A G A = = T = T = A T C G C = = = A = = A = = = = = = = = = = = = = A G = A = (D) (G) = = = = = (G) = = = = = G G T G = = C = C = G A T A T = = = C = = C = = = = = = = = = = = = = C A = G = 0 P069 I A = = = = = A = = = = = C = T = = = ? I = = = A = A T = = = C = C = = = = = = = = = = = = = = = = C = = D G = = = = = G = = = = = G = G = = = ? D = = = T = G C = = = A = T = = = = = = = = = = = = = = = = T = = 0 P070 (I) (A) = = = = = = = (D) = = = = = = = = = = (D) (C) = (G) = (T) = = ? = = = = (T) = = = (C) = T A C C = A D G T = A = = G (D) (G) = = = = = = = (I) = = = = = = = = = = (I) (T) = (A) = (C) = = ? = = = = (C) = = = (T) = A G T A = G I C C = G = = C 0 P071 = = (A) = = (T) = (A) (G) = = = = = = = = = = = D C = G = T = = = = = = = T = = = C = = = = = (C) = = = = = (G) (C) = (C) = = (G) = = (C) = (G) (A) = = = = = = = = = = = I T = A = C = = = = = = = C = = = T = = = = = (A) = = = = = (A) (T) = (G) 0 P072 = ? (A) = (A) (T) = (A) (G) = = = = = = (G) = = = = = = = = = = = = = = = = = = = ? = = = T A C C ? A D G T ? A T = G = ? (G) = (G) (C) = (G) (A) = = = = = = (T) = = = = = = = = = = = = = = = = = = = ? = = = A G T A ? G I C C ? G C = C 0 P073 (I) = = ? (G) = = (G) = (I) = = = C = = = = = = I T = = = = = = = T = = C C = = = = = = = = = = = = = = = = = = = (D) = = ? (A) = = (A) = (D) = = = G = = = = = = D C = = = = = = = C = = T T = = = = = = = = = = = = = = = = = = = 0 P074 = = = = = = (A) = = (D) (T) = (T) (G) (G) = = (A) = = ? ? ? ? = = = = ? (C) = = (T) = = = ? = (G) T A C C A A ? ? ? A ? = ? G = = = = = = (G) = = (I) (C) = (C) (C) (A) = = (G) = = ? ? ? ? = = = = ? (T) = = (C) = = = ? = (T) A G T A C G ? ? ? C ? = ? C 0 P075 = = (A) = A = = A = D = = = (C) = = = = = = = = = = = = = = = = = = = ? = = = (C) = = = = = = = = = = = = = = = = = (G) = G = = G = I = = = (G) = = = = = = = = = = = = = = = = = = = ? = = = (T) = = = = = = = = = = = = = = = 0 P076 = = (A) = = = = = = = = = = (C) = = = G = T = T C A = C = = = = = (C) = (C) = = = = = T A C C = A D G T = = = = = = = (G) = = = = = = = = = = (G) = = = A = C = C T G = T = = = = = (A) = (T) = = = = = A G T A = G I C C = = = = = 0 P077 = = = = = = (A) = = (D) (T) = (T) (G) (G) = = = = = = = = = = = = T ? = G C = = = C I = G A G T A = G I C C C = = G C = = = = = = (G) = = (I) (C) = (C) (C) (A) = = = = = = = = = = = = C ? = T A = = = T D = T T A C C = A D G T A = = A G 0 P078 (I) = = = (G) = (A) (G) = = (T) T = = = = = A T = I = = = = = = = = ? = = C C = = D = T T A C C = A D G = A = = A G (D) = = = (A) = (G) (A) = = (C) C = = = = = G G = D = = = = = = = = ? = = T T = = I = G A G T A = G I C = C = = G C 0 P079 (I) = = = = = = = = = = = C = A = = G = = = = C = A = A = T T = A C = = = ? = T = = ? = = = = = = = (G) = (A) = (D) = = = = = = = = = = = T = G = = A = = = = T = T = G = C C = C T = = = ? = G = = ? = = = = = = = (A) = (G) = 0 P080 = = = = = = (A) = = (D) (T) = = G G T G = = C = C = G A T A T = = = C = = C = = = = = = = = = = = = = = = = = = = = = = = = (G) = = (I) (C) = = C A G A = = T = T = A T C G C = = = A = = A = = = = = = = = = = = = = = = = = = 0 P081 (I) (A) = = = = = (A) = = = ? = = = = = ? = = = = = = = = = = (C) = (G) (C) = = ? ? ? ? ? T A C C A A D G T A = = A ? (D) (G) = = = = = (G) = = = ? = = = = = ? = = = = = = = = = = (T) = (T) (A) = = ? ? ? ? ? A G T A C G I C C C = = G ? 0 P082 (I) = = = = = (A) = = = (T) = = (C) = = = = = = = = = = = = = = ? = (G) = = ? = (C) ? = (G) (T) (A) (C) (C) (A) (A) (D) (G) (T) (A) = = (A) (G) (D) = = = = = (G) = = = (C) = = (G) = = = = = = = = = = = = = = ? = (T) = = ? = (T) ? = (T) (A) (G) (T) (A) (C) (G) (I) (C) (C) (C) = = (G) (C) 0 P083 = ? = = = = = = = (D) (T) = (T) (G) (G) = = = = = = = = = = = = (T) (C) (C) = (C) (T) = = = (I) = (G) ? (G) (T) (A) = (G) (I) (C) (C) = (G) = = (C) = ? = = = = = = = (I) (C) = (C) (C) (A) = = = = = = = = = = = = (C) (T) (T) = (A) (C) = = = (D) = (T) ? (A) (C) (C) = (A) (D) (G) (T) = (A) = = (G) 0 P084 I A = A G = = G = I = = T = G = = A = = ? = T = = = = = = = = = = = = = = = = = = = = = = = = = C A = G = D G = G A = = A = D = = C = A = = G = = ? = C = = = = = = = = = = = = = = = = = = = = = = = = = A G = A = 0 P085 (I) ? = = (G) = = (G) = = = = = (G) (G) (T) = = = = (I) = = = (A) = (A) (T) = = = (C) = (C) = = = = = ? A C C = A D ? ? A = = A G (D) ? = = (A) = = (A) = = = = = (C) (A) (G) = = = = (D) = = = (T) = (G) (C) = = = (A) = (T) = = = = = ? G T A = G I ? ? C = = G C 0 P086 ? = = = (G) = (G) = = (I) (C) = T = = G = A = = = = T = T = G ? ? = = = = = = = = = = T A C C A A D G T = A = = G ? = = = (A) = (A) = = (D) (T) = C = = T = G = = = = C = A = A ? ? = = = = = = = = = = A G T A C G I C C = G = = C 0 P087 = = = = = = = = = = = C = = = = = G G = = = = = = = = ? = = = = ? ? = = D = = = ? = = = = = = = = = = = = = = = = = = = = = = = T = = = = = A T = = = = = = = = ? = = = = ? ? = = I = = = ? = = = = = = = = = = = = 0 P088 = ? = (G) = (C) = = (A) = = = (T) = (G) ? = = = = ? = = = A = A = = T G = C = = C = = = = = = = = = = = = (C) = = (G) (C) = ? = (A) = (T) = = (G) = = = (C) = (A) ? = = = = ? = = = T = G = = C T = T = = T = = = = = = = = = = = = (A) = = (A) (G) 0 P089 = = ? = = = = = = ? = = = G = = = ? = = = C = = A = A = T C T = T = ? ? ? ? = T A C C = A ? ? ? ? = ? A ? = = ? = = = = = = ? = = = C = = = ? = = = T = = T = G = C T G = C = ? ? ? ? = A G T A = G ? ? ? ? = ? G ? 0 P090 I A = = = = = A = = = = = C A T = = = = = = C = A = A T ? ? = = = = = = = = = T ? C ? A A ? ? ? = A = = G D G = = = = = G = = = = = G G G = = = = = = T = T = G C ? ? = = = = = = = = = A ? T ? C G ? ? ? = G = = C END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = ? 0.59 = = 0.59 0.59 = 0.59 = = = = = 0.74 = = = = = = = = = = = = ? = = = = = ? = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = = = = 0.59 = 0.60 = = = = = = = = = = 1.00 1.00 = 1.00 = 1.00 = ? = = = = = ? = = = ? = = = = = = = = = = = = = = = = = 0.57 = = = = = = 0.77 = = = = = = = 0.83 = = = = 0.83 = 0.83 = 0.83 = = 0.91 0.89 = = 0.89 = 0.89 0.89 = 0.89 0.77 0.77 0.77 0.77 = 0.77 0.77 0.77 0.77 = = = = = 0.61 0.59 = 0.59 = = = = = 0.86 = = = 0.84 = = 0.84 = = 0.84 ? 0.84 = 0.84 = 0.84 = ? 0.84 = = = = = 0.84 0.84 ? = 0.84 0.62 0.62 0.62 0.62 = 0.62 0.62 0.62 0.62 0.62 = = 0.62 0.62 0.56 = = = 0.57 = = 0.57 = = = = = 0.69 = = = = = = 0.65 0.65 = 0.65 = 0.65 = ? = = ? ? ? ? = = = 0.65 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = ? 1.00 = = 0.53 = = = = = = = = = 1.00 = 1.00 = = 1.00 = = ? = 1.00 = = = = = = = = 1.00 = 1.00 = = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = 0.94 = = 0.94 = = = = = = 0.98 = = = = = ? = 0.98 = = = = ? = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = = = = = = 1.00 = = = 1.00 = ? 1.00 = = 1.00 ? 1.00 = 1.00 = 1.00 = ? = = ? = ? ? 1.00 = = ? ? 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 0.64 = = = = = = = = 0.75 = = = 0.85 0.89 1.00 = = = = 1.00 = = = 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = 0.90 0.90 = 0.90 = 0.73 = = = 0.92 = = 0.92 = = = = = 0.91 0.93 0.94 = = = = = = = = = = = ? 0.94 = 0.94 0.94 = = = 0.94 0.94 = 0.94 0.85 0.85 0.85 0.85 = 0.85 0.85 0.85 0.85 = 0.85 = = 0.85 0.56 = = = = = = = = = = = = = 0.86 0.86 = 0.86 = = = = 0.86 = 0.86 = 0.86 0.86 0.86 = = 0.86 = = = = = 0.86 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = 0.98 = = = = = = = 0.99 = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = 0.97 = = = = = = = = = = = = = = = = = = 0.50 = = = 1.00 = = 1.00 = = 1.00 1.00 1.00 = 1.00 = 1.00 = = = = ? ? = 1.00 1.00 = = = = = = = = = = = = = 0.95 0.95 0.95 0.95 = = = 0.65 = = 0.63 = = 0.63 ? = = 0.92 = = 0.92 = 0.92 = = = = 0.92 = 0.92 = 0.92 0.92 = = = 0.78 = ? = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.77 ? 0.65 = = 0.79 = = 0.79 ? = = = = = = = 0.77 = = ? = 0.77 = = = = = = = = 0.87 = 0.87 = = ? = = ? ? ? ? ? ? ? ? ? 1.00 = = 1.00 1.00 0.78 0.80 = = = = 0.87 = = = 0.87 = = = 1.00 1.00 = 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 = 1.00 = = = = 0.90 = = = = = = = = = = = = ? 0.58 0.68 0.68 = 0.68 = 0.68 = = = 0.83 0.83 = = = = 1.00 = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = 0.83 = = = = = = = = = 0.65 = = = = = = = = 0.68 = = 0.96 0.96 0.96 = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 = 1.00 = = = = = = = ? ? 0.92 0.92 = 0.92 = = = = ? = = = = = 0.62 = = = = 0.73 = = 0.96 0.96 = = 0.96 = = = = ? ? = 0.98 0.93 = 0.93 = = 0.93 = = = = = = = = = = = = 0.82 = = = = = 0.51 = = = = 0.58 0.58 = = 0.58 = = = = 1.00 = = = = = = 1.00 = 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = 0.87 = = = = = = = = = 0.89 0.94 = = = = 0.94 = = = 0.94 1.00 = = 1.00 = = 1.00 1.00 = = = 1.00 = = = = = = = = 1.00 1.00 = = = ? = 1.00 0.99 0.99 0.99 0.99 0.99 0.99 0.99 0.99 0.99 0.99 = = 0.99 0.99 = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = ? 1.00 = = = = = = = = = = = = = = ? 0.63 ? 0.66 = 0.66 0.66 = 0.66 0.66 = = = = = = = = = = = 0.90 0.90 = 0.90 = 0.90 = = = = = = = = = = = 0.78 = = = = 0.84 0.84 = = = = 0.84 = = 0.84 = 0.51 = = = = = = = = 0.65 = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = 1.00 = 1.00 = = 1.00 = = ? = 1.00 = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = = = ? = = = = = = = = = 0.54 0.55 = = 0.54 = = = 0.99 1.00 = = = = 1.00 = = = 1.00 = 1.00 1.00 = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = 0.63 0.63 = 0.63 0.63 = 0.67 = = = 0.67 0.78 = = = = = 0.78 0.78 = 0.78 = = = ? = = = = 0.53 = = = 0.78 0.78 = = = = 0.91 0.91 0.91 0.91 = 0.91 0.91 0.91 0.91 = = = 0.91 = 0.63 = = = 0.63 = 0.53 0.53 = = ? = = = = = = = = = 0.88 0.88 = = = 0.88 = ? ? = = = 0.88 0.88 = = ? 0.88 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 0.67 0.70 = = = = = = = 0.54 = = = 0.87 = = 0.87 = = 0.87 = = = = = = = = = = ? ? = ? = = = 0.87 = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 0.75 = = 0.75 0.75 = ? = = = 0.80 = = 0.80 = = = = = = = ? 0.66 = = = = 0.66 = 0.66 = 0.66 = = = 0.92 = = ? 0.92 0.92 0.92 = 0.92 = = = = = = = = = = = = = = ? 0.70 = = 0.70 = 0.71 0.71 = = 0.71 = = = = = = = = = = = = = = = = = ? = = 0.97 = 0.97 = = ? = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 0.52 = = = = = 0.52 = = = 0.52 0.79 0.80 = 0.80 = ? 1.00 = ? = 1.00 1.00 = = = = = = = = 0.98 = 0.98 = = = = = = = = = = = = = = = = 0.77 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = 0.93 = 1.00 = 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = 0.88 0.92 = 0.92 = = = = = = = = = = = = = = = = ? = = 1.00 = 1.00 = = = 1.00 = = 1.00 = = = 1.00 1.00 1.00 = = = = = = = = ? = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 = 1.00 = 1.00 = 1.00 = = = = = 1.00 = ? 1.00 = = = = = = = = = = = = = = = = = = 0.97 0.98 = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 = = = 1.00 1.00 1.00 = 1.00 = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = = 0.77 = = 0.83 = = 0.83 0.83 = 1.00 = 1.00 = = 1.00 = = ? = 1.00 = = = = = = = = 1.00 = 1.00 = = = = = = = = = 0.76 = = = = ? = = = = = = = = = = = = = = = = = = 0.87 0.87 = = = = 0.87 = = = 0.87 = 0.87 0.87 = = = 0.87 = 0.87 = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = 0.76 = 0.76 = = = = = = = = = = = = = 0.90 = = 0.90 = 0.90 = = = = = ? = = = = = = = ? 0.99 0.99 = = = = = = = = = 0.99 ? = = 0.99 = = = = = = 0.97 = = = 0.97 = = 0.99 0.99 0.99 = = = = = 0.99 = 0.99 0.99 0.99 0.99 0.99 = = = = 0.99 = = = = = = 0.54 0.54 0.54 0.54 0.54 0.54 0.54 0.54 0.54 = 0.54 = = 0.54 = = = 0.53 = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.96 = 0.96 = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 ? = 1.00 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 = 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 0.74 0.74 0.74 0.74 = 0.74 0.74 0.74 0.74 = = = = = = = = = = = = = = = = = 0.94 = = 0.94 = 0.94 = = = = 0.94 = 0.94 = 0.94 0.94 = = = = = = = = ? ? = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 0.62 = 0.81 = = 0.84 = = 0.84 0.84 = = 0.95 0.95 0.95 = = 0.95 = = = 0.95 0.95 0.95 = 0.95 = = = = = 0.95 = = = = = 0.95 = 0.81 0.81 0.81 0.81 = 0.81 0.81 0.81 0.81 0.81 = = 0.81 0.81 0.61 ? = = = = 0.83 0.83 = = 0.83 = = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = 0.69 = 0.65 ? = = 0.73 = ? ? 0.73 = 0.95 = 0.95 = = = 0.95 = = = 0.95 = = = = = ? = = 0.82 = = 0.82 = = = = = = = = = = = = = 0.86 0.86 = ? = = = = = = 0.52 = = 0.52 = = = = = = = = 1.00 = = ? = 1.00 = = = = = = = = = = = = = = = = = = = = 0.91 = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = 1.00 1.00 = = = 1.00 = = = = = = 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = 0.77 0.82 = = = = = = = 0.53 = = = 1.00 = = 1.00 = = 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = 0.94 = 0.94 = = = = = = = = = = = = = = = 0.84 0.84 = 0.84 = 0.62 0.62 0.62 = = = = = = = = 1.00 = 1.00 = = 1.00 = = ? = 1.00 = = = = = = = = 0.98 = 0.98 = = ? = = = = = = = = = = = 0.83 0.83 = 0.83 = = = = = = = = = = = = = = 0.59 = = = 0.71 = = ? = 0.71 = = = = = ? = = 0.71 = 0.71 = = = ? = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 0.76 = = = 0.77 = = 0.77 = 0.77 = = = 0.98 = = = = = = 1.00 = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 = = = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = ? 0.93 = 0.95 = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 = 1.00 = 1.00 = = = 1.00 1.00 ? = 1.00 0.80 0.80 0.80 0.80 = 0.80 0.80 0.80 0.80 0.94 = = = = 0.77 = = = = 0.80 = = 0.80 0.80 = 0.95 = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = = = ? 1.00 = = = = = = = = = = = = = = = = = = = 0.51 = = = = 0.51 = = 0.51 0.51 = = 0.51 0.51 0.66 = = = = = = 0.66 = 0.66 = 0.66 0.66 = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? = 1.00 1.00 0.60 = = = = = = = = 0.61 = 1.00 1.00 = 1.00 = = = 1.00 = = = 1.00 = = = = = = = = = = ? = = = = 0.69 = = = = = = = = = = 0.72 0.65 = = = = = = = = 0.98 = = = 0.98 = = 0.98 0.98 0.98 = = = = = 0.98 = 0.98 0.98 0.98 0.98 0.98 = = = 0.98 = = = = ? 0.98 = 0.59 0.59 0.59 0.59 0.59 0.59 0.59 0.59 0.59 = 0.59 = = 0.59 0.68 = 0.74 = = = = = = 0.73 = 0.73 = = = = = ? 0.85 ? ? = = = = = = = 0.85 = = = = = 0.85 = = 0.85 = 0.87 0.87 0.87 0.87 = 0.87 0.87 0.87 0.87 = 0.87 0.87 = 0.87 ? = = = 0.72 = = 0.72 = 0.72 = = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 = 1.00 = 1.00 = 1.00 = 1.00 1.00 = = = 1.00 ? = 1.00 0.76 0.76 0.76 0.76 = 0.76 0.76 0.76 0.76 0.76 = = 0.76 0.76 0.90 0.96 = = = = 0.96 = = = 0.96 1.00 1.00 = 1.00 = = = 1.00 = = = 1.00 = = = = = = = = 1.00 1.00 = = = 1.00 = 1.00 = = = = = = = = = 0.99 0.99 0.99 0.99 = = ? = 0.95 = = = = = = = = = 1.00 = = = = = = ? 1.00 = = 1.00 = 1.00 = 1.00 0.79 = = 0.79 = 0.79 = 0.79 = 0.79 0.99 0.99 0.99 0.99 = 0.99 0.99 0.99 ? = ? = = = = ? = = = = 0.76 = = 0.76 0.76 0.95 0.95 = 0.95 = = = ? = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = ? = = 0.99 = = = = = 0.99 = 0.99 = = = 1.00 1.00 = = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = = = = = 1.00 = 0.98 0.98 0.98 0.98 = 0.98 0.98 0.98 0.98 = 0.98 = = 0.98 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 0.54 0.50 = = = = = 0.50 = = = = = 0.93 0.93 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = = 1.00 = = = = = = = = = = = = = 0.95 0.95 = 0.95 = 0.94 0.96 = = = = = 0.96 = = = = = 1.00 = 1.00 = = = ? 1.00 = = = 1.00 = 1.00 1.00 = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = 0.97 = = 0.53 0.54 = = = = = = = 0.56 = = = = = = = = = = 0.53 0.53 = 0.53 = 0.53 = = ? = = = = 0.53 = = = 0.53 = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = 0.84 = = 0.87 = 0.86 0.87 = = = = = = = = = = = 0.94 0.94 = 0.94 = 0.94 = = = = = = = 0.94 = = = 0.94 = = = = = 0.62 = = = = = 0.56 0.56 = 0.56 = ? 0.51 = 0.52 0.53 = 0.53 0.53 = = = = = = 0.71 = = = = = = = = = = = = = = = = = = = ? = = = 1.00 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 ? 1.00 1.00 = 1.00 0.70 = = ? 0.69 = = 0.70 = 0.70 = = = 0.98 = = = = = = 1.00 1.00 = = = = = = = 1.00 = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = 0.60 = = 0.60 0.60 = 0.84 0.84 0.84 = = 0.84 = = ? ? ? ? = = = = ? 0.84 = = 0.84 = = = ? = 0.84 1.00 1.00 1.00 1.00 1.00 1.00 ? ? ? 1.00 ? = ? 1.00 = = 0.87 = 1.00 = = 1.00 = 1.00 = = = 0.62 = = = = = = = = = = = = = = = = = = = ? = = = 0.52 = = = = = = = = = = = = = = = = = 0.66 = = = = = = = = = = 0.83 = = = 0.92 = 0.92 = 0.92 0.92 0.92 = 0.92 = = = = = 0.89 = 0.89 = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = = = = = = = = = 0.72 = = 0.72 0.72 = 0.88 0.88 0.88 = = = = = = = = = = = = 0.94 ? = 0.94 0.94 = = = 0.94 0.94 = 0.94 0.93 0.93 0.93 0.93 = 0.93 0.93 0.93 0.93 0.93 = = 0.93 0.93 0.73 = = = 0.76 = 0.77 0.77 = = 0.77 1.00 = = = = = 1.00 1.00 = 1.00 = = = = = = = = ? = = 1.00 1.00 = = 1.00 = 1.00 0.98 0.98 0.98 0.98 = 0.98 0.98 0.98 = 0.98 = = 0.98 0.98 0.60 = = = = = = = = = = = 1.00 = 1.00 = = 1.00 = = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = = ? = 1.00 = = ? = = = = = = = 0.84 = 0.84 = = = = = = = 0.69 = = 0.69 0.69 = = 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = 0.55 0.56 = = = = = 0.56 = = = ? = = = = = ? = = = = = = = = = = 0.52 = 0.52 0.52 = = ? ? ? ? ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 ? 0.75 = = = = = 0.75 = = = 0.75 = = 0.79 = = = = = = = = = = = = = = ? = 0.63 = = ? = 0.63 ? = 0.63 0.76 0.76 0.76 0.76 0.76 0.76 0.76 0.76 0.76 0.76 = = 0.76 0.76 = ? = = = = = = = 0.79 0.79 = 0.75 0.75 0.75 = = = = = = = = = = = = 0.67 0.67 0.67 = 0.67 0.67 = = = 0.67 = 0.67 ? 0.77 0.77 0.77 = 0.77 0.77 0.77 0.77 = 0.77 = = 0.77 0.92 0.93 = 0.93 0.93 = = 0.93 = 0.93 = = 0.99 = 0.99 = = 0.99 = = ? = 0.99 = = = = = = = = = = = = = = = = = = = = = = = = = 0.93 0.93 = 0.93 = 0.56 ? = = 0.59 = = 0.60 = = = = = 0.51 0.54 0.60 = = = = 0.63 = = = 0.63 = 0.63 0.63 = = = 0.63 = 0.63 = = = = = ? 1.00 1.00 1.00 = 1.00 1.00 ? ? 1.00 = = 1.00 1.00 ? = = = 0.53 = 0.67 = = 0.67 0.67 = 0.96 = = 0.96 = 0.96 = = = = 0.96 = 0.96 = 0.96 ? ? = = = = = = = = = = 0.96 0.96 0.96 0.96 0.96 0.96 0.96 0.96 0.96 = 0.96 = = 0.96 = = = = = = = = = = = 1.00 = = = = = 1.00 1.00 = = = = = = = = ? = = = = ? ? = = 1.00 = = = ? = = = = = = = = = = = = = ? = 0.58 = 0.63 = = 0.63 = = = 0.70 = 0.70 ? = = = = ? = = = 1.00 = 1.00 = = 0.92 0.92 = 0.92 = = 0.92 = = = = = = = = = = = = 0.88 = = 0.88 0.88 = = ? = = = = = = ? = = = 0.93 = = = ? = = = 0.97 = = 0.97 = 0.97 = 0.97 0.97 0.97 = 0.97 = ? ? ? ? = 1.00 1.00 1.00 1.00 = 1.00 ? ? ? ? = ? 1.00 ? 0.95 0.97 = = = = = 0.97 = = = = = 0.97 0.97 1.00 = = = = = = 1.00 = 1.00 = 1.00 1.00 ? ? = = = = = = = = = 1.00 ? 1.00 ? 1.00 1.00 ? ? ? = 1.00 = = 1.00 END PHASEPROBS