LOCUS FOXC2 5396 bp DNA linear PRI 28-APR-2008 DEFINITION Homo sapiens FOXC2 forkhead box C2 (MFH-1, mesenchyme forkhead 1) (FOXC2) gene, complete cds. ACCESSION FOXC2 VERSION tmp KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5396) AUTHORS Livingston,R.J., Rieder,M.J., Shaffer,T., Bertucci,C., Baier,C.N., Rajkumar,N., Willa,H.T.., Stanaway,I.B., Nguyen,C.P., Gildersleeve,H., Johnson,E.J., Swanson,J.E., McFarland,I., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (28-APR-2008) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..5396 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 110..113 /frequency="0.1064" /replace="" variation 277 /frequency="0.0053" /replace="T" variation 411 /frequency="0.1263" /replace="G" variation 422 /frequency="0.1316" /replace="C" variation 446 /frequency="0.0263" /replace="T" variation 473 /frequency="0.0211" /replace="T" variation 532 /frequency="0.0056" /replace="G" variation 533 /frequency="0.1292" /replace="C" variation 694 /frequency="0.0056" /replace="T" variation 780 /frequency="0.0278" /replace="G" variation 862 /frequency="0.0053" /replace="C" variation 1057 /frequency="0.0053" /replace="C" variation 1108 /frequency="0.0053" /replace="G" variation 1176..1179 /frequency="0.0235" /replace="" variation 1253 /frequency="0.0211" /replace="T" variation 1437 /frequency="0.4062" /replace="T" variation 1473 /frequency="0.0063" /replace="A" variation 1599 /frequency="0.1159" /replace="T" gene 1949..3454 /gene="FOXC2" mRNA 1949..3454 /gene="FOXC2" /product="foxc2" CDS 1949..3454 /gene="FOXC2" /codon_start=1 /product="FOXC2 forkhead box C2 (MFH-1, mesenchyme forkhead 1)" /translation="MQARYSVSDPNALGVVPYLSEQNYYRAAGSYGGMASPMGVYSGH PEQYSAGMGRSYAPYHHHQPAAPKDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFI MDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGS FLRRRRRFKKKDVSKEKEERAHLKEPPPAASKGAPATPHLADAPKEAEKKVVIKSEAA SPALPVITKVETLSPESALQGSPRSAASTPAGSPDGSLPEHHAAAPNGLPGFSVENIM TLRTSPPGGELSPGAGRAGLVVPPLALPYAAAPPAAYGQPCAQGLEAGAAGGYQCSMR AMSLYTGAERPAHMCVPPALDEALSDHPSGPTSPLSALNLAAGQEGALAATGHHHQHH GHHHPQAPPPPPAPQPQPTPQPGAAAAQAASWYLNHSGDLNHLPGHTFAAQQQTFPNV REMFNSHRLGIENSTLGESQVSGNASCQLPYRSTPPLYRHAAPYSYDCTKY" variation 2383 /gene="FOXC2" /frequency="0.0118" /replace="T" variation 2520 /gene="FOXC2" /frequency="0.0067" /replace="T" variation 2596 /gene="FOXC2" /frequency="0.0172" /replace="A" variation 3043 /gene="FOXC2" /frequency="0.0299" /replace="G" variation 3496 /frequency="0.0269" /replace="T" variation 3617 /frequency="0.0106" /replace="T" variation 3650 /frequency="0.0947" /replace="T" variation 3714 /frequency="0.0842" /replace="A" variation 3851 /frequency="0.0053" /replace="T" variation 4148 /frequency="0.0174" /replace="C" variation 4273 /frequency="0.0053" /replace="A" variation 4283 /frequency="0.0105" /replace="T" variation 4381 /frequency="0.2158" /replace="T" variation 4451 /frequency="0.0323" /replace="G" variation 4535 /frequency="0.0474" /replace="G" variation 4563 /frequency="0.0316" /replace="G" variation 4607 /frequency="0.0211" /replace="A" variation 4796 /frequency="0.0053" /replace="T" variation 4820 /frequency="0.0316" /replace="C" variation 4868 /frequency="0.0160" /replace="C" variation 5000..5001 /frequency="0.0106" /replace="" variation 5083 /frequency="0.0269" /replace="A" BASE COUNT 1193 a 1589 c 1408 g 1206 t ORIGIN 1 cccgtgttta gccttgttaa aggggtgtct cactccttca gggaaagtgg gaaaagggga 61 tctgattatt gaggtgtgga aggaataaat aatcagtcca caaataaaca aactgtccgg 121 gattcctaga gggaaggaga aatccttgaa ggagatccaa gtcgctccag gtctgcctgc 181 cgaataatat catcccgaag ggatcttgaa ccgtttgcaa tcaaccgctc acccagtctt 241 cccacggagc gcgctcccta actcacccta cccacccaac aaaacaaaaa aaaggctgaa 301 atatagaaaa gcaacttgga ggctcccagg gggacgttgc caggagcagg aggcagggac 361 agcgccctag ggtcggtgtt agcggccggc gccggcctgg gccacgggaa acgtccacgc 421 ttggtgcccg cggtgcgcgg cgctcattgc gcgcgccttc gagccaagcc cccgcggaaa 481 acaggctcgg gtttctcctc gcagggccca ggaactcggc tctgcctggc ccgggtgggt 541 cgctgcattg tcccggtctt ctgggagtgc ggggtcagct tgttagaggg aatttctacc 601 tgggaaaagg gagacgagtt tcgaagctga agttggtagg ctgcgagtgt ccacgcggga 661 gacgaaaggg ggaaatagca gagtcacttc acccttttcc ccaaacccca caaaactgct 721 cgcagcgacg cggatgatct accgaattcc ccgcgaattc ggaggattaa gttgtcagtc 781 agcacgttgc taccttcccc tctatgcact ccgctgcctg gctcctcggc ggggagcgag 841 ggaaactcag tttgtagggt ttacctctaa aacctcgata ggttatcctt gacgaccccg 901 agcctggaaa ctccctgttg atgattaatt atttgattaa ataagtataa catccaggag 961 aggccctgcc attccaatcc agcgcgtttg ctttgaatcc attacacctg ggcccccata 1021 attaggaaat ctaattattc gcttcatcac tcattaataa gaaaaatgtc ccaggatcat 1081 tgctacttac aaggtctttg ggagagatat tttactctat taatccattc tattttatat 1141 ttcaaattga ttttttttaa cagaggaaag tggctatctt tttgttttgg gcatgtgggc 1201 ccattcacca aaatgtgatc ataaaataaa ttttaataag atataacttt ttaaaaagtt 1261 ttcaagtgaa gacggagtcg ccgcggaggc cggggcggcg gggtcttaga gccgacggat 1321 tcctgcgctc ctcgccccga ttggcgccga ctcctctcag ctgccgggtg attggctcaa 1381 agttccggga gggggcgtgg cccgaggaaa gtaaaaactc gctttcagca agaagacttt 1441 tgaaactttt cccaatccct aaaagggact tggcctcttt ttctgggctc agcggggcag 1501 ccgctcggac cccggcgcgc tgaccctcgg ggctgccgat tcgctggggg cttggagagc 1561 ctcctgcgcc cctcctcgcg cgggccgagg gtccacctgg gtccccaggc cgcggcgtct 1621 ccgctgggtc cgcggccgcc cgcctgcccg cgctgccgcc gccgggtcct ggagccagcg 1681 aggagcgggg ccggcgctgc gcttgcccgg ggcgcgccct ccaggatgcc gatccgcccg 1741 gtccgctgaa agcgcgcgcc cctgctcggc ccgagcgccg ccgcccgcgc accctcgccc 1801 cggaggctgc caggagcccg gggccgcccc tcccgctccc ctcctctccc cctctggctc 1861 tctcgcgctc tctcgctctc agggcccccc tcgctccccc ggccgcagtc cgtgcgcgag 1921 ggcgccggcg agccgtctcg gaagcagcat gcaggcgcgc tactccgtgt ccgaccccaa 1981 cgccctggga gtggtgccct acctgagcga gcagaattac taccgggctg cgggcagcta 2041 cggcggcatg gccagcccca tgggcgtcta ttccggccac ccggagcagt acagcgcggg 2101 gatgggccgc tcctacgcgc cctaccacca ccaccagccc gcggcgccta aggacctggt 2161 gaagccgccc tacagctaca tcgcgctcat caccatggcc atccagaacg cgcccgagaa 2221 gaagatcacc ttgaacggca tctaccagtt catcatggac cgcttcccct tctaccggga 2281 gaacaagcag ggctggcaga acagcatccg ccacaacctc tcgctcaacg agtgcttcgt 2341 caaggtgccc cgcgacgaca agaagcccgg caagggcagt tactggaccc tggacccgga 2401 ctcctacaac atgttcgaga acggcagctt cctgcggcgc cggcggcgct tcaaaaagaa 2461 ggacgtgtcc aaggagaagg aggagcgggc ccacctcaag gagccgcccc cggcggcgtc 2521 caagggcgcc ccggccaccc cccacctagc ggacgccccc aaggaggccg agaagaaggt 2581 ggtgatcaag agcgaggcgg cgtccccggc gctgccggtc atcaccaagg tggagacgct 2641 gagccccgag agcgcgctgc agggcagccc gcgcagcgcg gcctccacgc ccgccggctc 2701 ccccgacggc tcgctgccgg agcaccacgc cgcggcgccc aacgggctgc ctggcttcag 2761 cgtggagaac atcatgaccc tgcgaacgtc gccgccgggc ggagagctga gcccgggggc 2821 cggacgcgcg ggcctggtgg tgccgccgct ggcgctgccc tacgccgccg cgccgcccgc 2881 cgcctacggc cagccgtgcg ctcagggcct ggaggccggg gccgccgggg gctaccagtg 2941 cagcatgcga gcgatgagcc tgtacaccgg ggccgagcgg ccggcgcaca tgtgcgtccc 3001 gcccgccctg gacgaggccc tctcggacca cccgagcggc cccacgtcgc ccctgagcgc 3061 tctcaacctc gccgccggcc aggagggcgc gctcgccgcc acgggccacc accaccagca 3121 ccacggccac caccacccgc aggcgccgcc gcccccgccg gctccccagc cccagccgac 3181 gccgcagccc ggggccgccg cggcgcaggc ggcctcctgg tatctcaacc acagcgggga 3241 cctgaaccac ctccccggcc acacgttcgc ggcccagcag caaactttcc ccaacgtgcg 3301 ggagatgttc aactcccacc ggctggggat tgagaactcg accctcgggg agtcccaggt 3361 gagtggcaat gccagctgcc agctgcccta cagatccacg ccgcctctct atcgccacgc 3421 agccccctac tcctacgact gcacgaaata ctgacgtgtc ccgggacctc ccctccccgg 3481 cccgctccgg cttcgcttcc cagccccgac ccaaccagac aattaagggg ctgcagagac 3541 gcaaaaaaga aacaaaacat gtccaccaac cttttctcag acccgggagc agagagcggg 3601 cacgctagcc cccagccgtc tgtgaagagc gcaggtaact ttaattcgcc gccccgtttc 3661 tgggatccca ggaaacccct ccaaagggac gcagcccaac aaaatgagta ttggtcttaa 3721 aatccccctc ccctaccagg acggctgtgc tgtgctcgac ctgagctttc aaaagttaag 3781 ttatggacca aatcccatag cgagccccta gtgactttct gtaggggtcc ccataggtgt 3841 atgggggtct ctatagataa tatatgtgct gtgtgtaatt ttaaatttct ccaaccgtgc 3901 tgtacaaatg tgtggatttg taatcaggct attttgttgt tgttgttgtt gttcagagcc 3961 attaatataa tatttaaagt tgagttcact ggataagttt ttcatcttgc ccaaccattt 4021 ctaactgcca aattgaattc aagaaaccga tgtgggtttt gtttcctgta caattatgag 4081 atataattct ttttcccatt gtaggtcttt tacaaaacaa gaaaataatt tatttttttg 4141 ttggtggata aagaagtcaa gtatctgata ctttttattt acaaagtgtg atggttttgt 4201 atagtaggtt ccaccctgag tattcctaaa agaaaaaaaa aaaaaaagct taaaaactct 4261 aacttcatct gtgtttgtct tacgtggtct taatcgttgt acttacctta aaataaaccc 4321 atgttgtttt ttctgcccaa agtttggaca gtgtgtttgt gttgttgcat tttttacaaa 4381 cgaggtgtgt ttgcaaaccc acctgctttg attatttttg ttacacaggt gggtatatgt 4441 gtagacacat aaaaacgacc agagaatagg agcacacacc tgctgtcttg tttagtgaca 4501 gaaaaaggct tttgattaat tttaaaatcc cactctagga ttttttcttt tcgagaaacc 4561 gcccagttgg agggggctgc ctgaaggacc ggaccatgag tttgccgtga tgcattttct 4621 taaatgcaca aaaacatgct aattgtcaaa acaaacagtg ccactccatc tcagtgtcca 4681 gccgtcccca gtttaggagg tgaaggaagg gaagaataaa catttcccgt ttgctaactg 4741 caacccaggg tgagtcctgc tttcccccga ttttataaaa tttgagcctc tttgcctgct 4801 ttaatagttt tccagagaat ttgaactggg ccaatgaagg tctgaagggg acggattttc 4861 tagcgtttga tatccatccc ccttagcggc cagatcagag gggaatttca gactttatta 4921 cttctcaatg tcatgtctaa atctacaccc tcatcgcagt gaaaaatttt aaaacctcat 4981 tacccttcaa aaataattta tgatattttt agagttctaa attcaagttt ttcaatatgt 5041 taaataatag agattatttt ttgttttcaa tgttaatatc tcgtctttta catttttaat 5101 agtaacatag tttttgtgaa atgtagctga cgaaatggct ttattatcta tttcaatggc 5161 tgaagtccac cactcccctg ctggcctcta tgtgtgaatt tggggaccaa agcttcatca 5221 attcccaccc cagcaggtga gctgtacctt gctaatgctg aagttctttg tgagcttaac 5281 gtttcaagac cagatgattt tgctaaaggt gattttgctt gatgcagtgg cgctgaacgt 5341 aacccgggtg tttttcttgt tgttttcaac atggcacttt atctccacgc tatgtt //