FOXC1 Color FASTA

The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.

*Display courtesy of GeneSNPs

TTTAATAGAT GGTCGGAAAT CAGGGGCAGC GGAGCTGTTA AATGCGTCAC 50 GCACGCTTCT TCGCAGTCTC CTGAGCTCGC CACTTCCCCC AGCTTCTAGT 100 GAACGACTTG GGATTCAGCC TCCGGGAGGG TCTCTCCTCA AGTCGCTAAA 150 ATGCAGAATC GCCGTGCCGG GGGAGGGAGG CCTGGCTCTT TCCCGCTCCT 200 | var(163):[A:0.0724] | var(195):[A:0.0063] TCGTTTCTTT CCCTCATTTC TCTTCTTCCT GTCCCATTCC AACCACCCAG 250 CGACGGCGAA TCTCAGGCGT GTGCACAACG AGCGGGGGCC CTTCCGTGCG 300 TGTCCCCCCA GAATCCTTGA ACCGCCCTCT AGGTGCGACC CTGGACGTTC 350 CCCCAGACAC ACCCGTTGTC TCTGCGAGCC GGCAGCCCCG CGCATGTGGA 400 GATGGAGACT GGCCTGGGGA AGCGTTAAGC TCTTAGACAT ATTTATTTGC 450 TTCTTGTCAT CACACCTGCT AATGTCACCG AGCCCGCAGC CTGACCCCTC 500 ATCTGAGCCG AAACGGGCCT GACGGGATCA GAGGGGGCGG CGGCGCGGCG 550 | var(533):[T:0.0053] | var(542):[T:0.0053] AGCCGGTGGG ACCCTCGCGG GCGGGCAGGG GAGCGCGGGG CAGCAGCCGG 600 | var(598):[T:0.0053] GCTCCGGCAG CCCTCGCCGC CCGCACCCTC AGGCCGCCAA GGGCCGGCCC 650 CCCGGGGAGG GGGGCGAGAA GCAGGGCGGC CCGCAGCGGG GCGGGCTCAT 700 CCTTCGCGGG TGAACGGCCG TCGGAAACTC CCAGCAGGGC CCCGCACCCC 750 TTGCCTTCAT TTCGGCTGGG GAGGGGTCAT GGAGGGGGGC CAGATGGGCG 800 ACGAACCTTC TTCCCCACCG CGAGCAGGGC CTGGCTGTGA CCGAGCCCTC 850 AAAATCATGT CCTTTGTAGC CGAGTTCAGG ACAGGAGAAC CTCCAAGTGG 900 AGAAAAGCCG GAGACGTCAG TGACCCGAGT GAGACTGGCG TTGGAGAAGG 950 | var(950):[T:0.0056] GAGGGAAGGG GCTGCGGGAG GGGAGAGGCG GCGGGGAGGA GAGGCTGGGG 1000 CAACCCCAGC GCTGGCGTCG GCGGGGCTGG CGAAGGAATG AGAGCGAGCC 1050 | var(1011):[T:0.4222] AGCACGAGGC GGGGCGGAGA CGCCAGGGCC ACTCGGGAGC CGTGGGCGAA 1100 GGAAGGGTCT GCACGGGGTC CCGGGAGGAC CCAGGAAGTC TGCGCGAACG 1150 | var(1105):[A:0.0120] GCGGGCGTGG GTCCGGAGGG CCCGGGGTGG GAGGTCTGCC GGGCGCCGGC 1200 GGCAGGCAGG TGGACTGCGG GGGGCGAACC GACGGCGGGC CGGGCGCCGG 1250 CGCGGGCGCA GGGCCGGGGC CCGGGCCAGG GCGGCCGGCG CGCGTGTGGT 1300 CAGCCCCGCG GTCCTCCGGC CTCCGGGAGC GGGCCGGCAG GGCTCGGCCT 1350 CCGGCTCATT CGGAGGCGGT TCTCACCTCC CATTGGCTGC CGCCGCTGGC 1400 GGGGCGGGGC TCCGCTGCCC GGAAAAAAGT GTAACTGCGT AAAAAAGTCC 1450 TCGCCTGGGT GACGGATGCT CAAAAGTTCA GAAGTTTTCC CAATGCTTCC 1500 TTAAGCGGCT GGCGCGCGAG AGACCGAGAA AAGGTGACGC GGGGCCCGGG 1550 CAGGCGGCCG GCGCGCGGCC CCCCCCCCCC CCGCCCTGGT TATTTGGCCG 1600 | var(1570):[G:0.0064] CCTTCGCCGG CAGCTCAGGG CAGAGTCTCC TGGAAGGCGC AGGCAGTGTG 1650 GCGAGAAGGG CGCCTGCTTG TTCTTTCTTT TTGTCTGCTT TCCCCCGTTT 1700 GCGCCTGGAA GCTGCGCCGC GAGTTCCTGC AAGGCGGTCT GCCGCGGCCG 1750 GGCCCGGCCT TCTCCCCTCG CAGCGACCCC GCCTCGCGGC CGCGCGGGCC 1800 CCGAGGTAGC CCGAGGCGCC GGAGGAGCCA GCCCCAGCGA GCGCCGGGAG 1850 AGGCGGCAGC GCAGCCGGAC GCACAGCGCA GCGGGCCGGC ACCAGCTCGG 1900 CCGGGCCCGG ACTCGGACTC GGCGGCCGGC GCGGCGCGGC GCGGCCCGGC 1950 | var(1941):[:0.9940] CCGAGCGAGG GTGGGGGGCG GCGGGCGGCG CGGGGCGGCG GCGAGCGGGG 2000 | var(1951):[T:0.0060] GCCATGCAGG CGCGCTACTC CGTGTCCAGC CCCAACTCCC TGGGAGTGGT 2050 | Exon 1 M Q A R Y S V S S P N S L G V V 16 GCCCTACCTC GGCGGCGAGC AGAGCTACTA CCGCGCGGCG GCCGCGGCGG 2100 P Y L G G E Q S Y Y R A A A A A 32 CCGGGGGCGG CTACACCGCC ATGCCGGCCC CCATGAGCGT GTACTCGCAC 2150 A G G G Y T A M P A P M S V Y S H 49 CCTGCGCACG CCGAGCAGTA CCCGGGCGGC ATGGCCCGCG CCTACGGGCC 2200 P A H A E Q Y P G G M A R A Y G P 66 CTACACGCCG CAGCCGCAGC CCAAGGACAT GGTGAAGCCG CCCTATAGCT 2250 Y T P Q P Q P K D M V K P P Y S 82 ACATCGCGCT CATCACCATG GCCATCCAGA ACGCCCCGGA CAAGAAGATC 2300 Y I A L I T M A I Q N A P D K K I 99 ACCCTGAACG GCATCTACCA GTTCATCATG GACCGCTTCC CCTTCTACCG 2350 T L N G I Y Q F I M D R F P F Y R 116 GGACAACAAG CAGGGCTGGC AGAACAGCAT CCGCCACAAC CTCTCGCTCA 2400 D N K Q G W Q N S I R H N L S L 132 ACGAGTGCTT CGTCAAGGTG CCGCGCGACG ACAAGAAGCC GGGCAAGGGC 2450 | var(2408):[T:0.0263] N E C F V K V P R D D K K P G K G 149 AGCTACTGGA CGCTGGACCC GGACTCCTAC AACATGTTCG AGAACGGCAG 2500 S Y W T L D P D S Y N M F E N G S 166 CTTCCTGCGG CGGCGGCGGC GCTTCAAGAA GAAGGACGCG GTGAAGGACA 2550 F L R R R R R F K K K D A V K D 182 AGGAGGAGAA GGACAGGCTG CACCTCAAGG AGCCGCCCCC GCCCGGCCGC 2600 K E E K D R L H L K E P P P P G R 199 CAGCCCCCGC CCGCGCCGCC GGAGCAGGCC GACGGCAACG CGCCCGGTCC 2650 Q P P P A P P E Q A D G N A P G P 216 GCAGCCGCCG CCCGTGCGCA TCCAGGACAT CAAGACCGAG AACGGTACGT 2700 Q P P P V R I Q D I K T E N G T 232 GCCCCTCGCC GCCCCAGCCC CTGTCCCCGG CCGCCGCCCT GGGCAGCGGC 2750 C P S P P Q P L S P A A A L G S G 249 AGCGCCGCCG CGGTGCCCAA GATCGAGAGC CCCGACAGCA GCAGCAGCAG 2800 S A A A V P K I E S P D S S S S S 266 CCTGTCCAGC GGGAGCAGCC CCCCGGGCAG CCTGCCGTCG GCGCGGCCGC 2850 L S S G S S P P G S L P S A R P 282 TCAGCCTGGA CGGTGCGGAT TCCGCGCCGC CGCCGCCCGC GCCCTCCGCC 2900 | var(2892):[T:0.0141] L S L D G A D S A P P P P A P S A 299 CCGCCGCCGC ACCATAGCCA GGGCTTCAGC GTGGACAACA TCATGACGTC 2950 P P P H H S Q G F S V D N I M T S 316 GCTGCGGGGG TCGCCGCAGA GCGCGGCCGC GGAGCTCAGC TCCGGCCTTC 3000 L R G S P Q S A A A E L S S G L 332 TGGCCTCGGC GGCCGCGTCC TCGCGCGCGG GGATCGCACC CCCGCTGGCG 3050 L A S A A A S S R A G I A P P L A 349 CTCGGCGCCT ACTCGCCCGG CCAGAGCTCC CTCTACAGCT CCCCCTGCAG 3100 L G A Y S P G Q S S L Y S S P C S 366 CCAGACCTCC AGCGCGGGCA GCTCGGGCGG CGGCGGCGGC GGCGGCGCGG 3150 | var(3145):[:0.6937] Q T S S A G S S G G G G G G G A 382 GGGCCGCGGG GGGCGCGGGC GGCGCCGGGA CCTACCACTG CAACCTGCAA 3200 G A A G G A G G A G T Y H C N L Q 399 GCCATGAGCC TGTACGCGGC CGGCGAGCGC GGGGGCCACT TGCAGGGCGC 3250 A M S L Y A A G E R G G H L Q G A 416 GCCCGGGGGC GCGGGCGGCT CGGCCGTGGA CGACCCCCTG CCCGACTACT 3300 P G G A G G S A V D D P L P D Y 432 CTCTGCCTCC GGTCACCAGC AGCAGCTCGT CGTCCCTGAG TCACGGCGGC 3350 | var(3339):[C:0.0054] S L P P V T S S S S S S L S H G G 449 GGCGGCGGCG GCGGCGGCGG GGGAGGCCAG GAGGCCGGCC ACCACCCTGC 3400 G G G G G G G G G Q E A G H H P A 466 GGCCCACCAA GGCCGCCTCA CCTCGTGGTA CCTGAACCAG GCGGGCGGAG 3450 A H Q G R L T S W Y L N Q A G G 482 ACCTGGGCCA CTTGGCGAGC GCGGCGGCGG CGGCGGCGGC CGCAGGCTAC 3500 | var(3462):[C:0.0058] D L G H L A S A A A A A A A A G Y 499 CCGGGCCAGC AGCAGAACTT CCACTCGGTG CGGGAGATGT TCGAGTCACA 3550 P G Q Q Q N F H S V R E M F E S Q 516 GAGGATCGGC TTGAACAACT CTCCAGTGAA CGGGAATAGT AGCTGTCAAA 3600 | var(3572):[G:0.0211] R I G L N N S P V N G N S S C Q 532 TGGCCTTCCC TTCCAGCCAG TCTCTGTACC GCACGTCCGG AGCTTTCGTC 3650 M A F P S S Q S L Y R T S G A F V 549 TACGACTGTA GCAAGTTTTG ACACACCCTC AAAGCCGAAC TAAATCGAAC 3700 | UTR Y D C S K F 555 CCCAAAGCAG GAAAAGCTAA AGGAACCCAT CAAGGCAAAA TCGAAACTAA 3750 | var(3723):[A:0.0215] AAAAAAAAAA TCCAATTAAA AAAAACCCCT GAGAATATTC ACCACACCAG 3800 CGAACAGAAT ATCCCTCCAA AAATTCAGCT CACCAGCACC AGCACGAAGA 3850 AAACTCTATT TTCTTAACCG ATTAATTCAG AGCCACCTCC ACTTTGCCTT 3900 GTCTAAATAA ACAAACCCGT AAACTGTTTT ATACAGAGAC AGCAAAATCT 3950 TGGTTTATTA AAGGACAGTG TTACTCCAGA TAACACGTAA GTTTCTTCTT 4000 GCTTTTCAGA GACCTGCTTT CCCCTCCTCC CGTCTCCCCT CTCTTGCCTT 4050 CTTCCTTGCC TCTCACCTGT AAGATATTAT TTTATCCTAT GTTGAAGGGA 4100 GGGGGAAAGT CCCCGTTTAT GAAAGTCGCT TTCTTTTTAT TCATGGACTT 4150 GTTTTAAAAT GTAAATTGCA ACATAGTAAT TTATTTTTAA TTTGTAGTTG 4200 GATGTCGTGG ACCAAACGCC AGAAAGTGTT CCCAAAACCT GACGTTAAAT 4250 | var(4218):[A:0.0316] | var(4247):[C:0.0211] TGCCTGAAAC TTTAAATTGT GCTTTTTTTC TCATTATAAA AAGGGAAACT 4300 GTATTAATCT TATTCTATCC TCTTTTCTTT CTTTTTGTTG AACATATTCA 4350 | var(4331):[:0.0053] TTGTTTGTTT ATTAATAAAT TACCATTCAG TTTGAATGAG ACCTATATGT 4400 CTGGATACTT TAATAGAGCT TTAATTATTA CGAAAAAAGA TTTCAGAGAT 4450 AAAACACTAG AAGTTACCTA TTCTCCACCT AAATCTCTGA AAAATGGAGA 4500 AACCCTCTGA CTAGTCCATG TCAAATTTTA CTAAAAGTCT TTTTGTTTAG 4550 ATTTATTTTC CTGCAGCATC TTCTGCAAAA TGTACTATAT AGTCAGCTTG 4600 CTTTGAGGCT AGTAAAAAGA TATTTTTCTA AACAGATTGG AGTTGGCATA 4650 TAAACAAATA CGTTTTCTCA CTAATGACAG TCCATGATTC GGAAATTTTA 4700 AGCCCATGAA TCAGCCGCGG TCTTACCACG GTGATGCCTG TGTGCCGAGA 4750 GATGGGACTG TGCGGCCAGA TATGCACAGA TAAATATTTG GCTTGTGTAT 4800 TCCATATAAA ATTGCAGTGC ATATTATACA TCCCTGTGAG CCAGATGCTG 4850 AATAGATTTT TTCCTATTAT TTCAGTCCTT TATAAAAGGA AAAATAAACC 4900 | var(4858):[A:0.2000] | var(4899):[A:0.0158] AGTTTTTAAA TGTATGTATA TAATTCTCCC CCATTTACAA TCCTTCATGT 4950 | var(4922):[:0.0053] ATTACATAGA AGGATTGCTT TTTTAAAAAT ATACTGCGGG TTGGAAAGGG 5000 ATATTTAATC TTTGGGAAAC TATTTTAGAA AATATGTTTG TAGAACAATT 5050 | var(5015):[A:0.3053] ATTTTTGAAA AAGATTTAAA GCAATAACAA GAAGGAAGGC GAGAGGAGCA 5100 GAACATTTTG GTCTAGGGTG GTTTCTTTTT AAACCATTTT TTCTTGTTAA 5150 TTTACAGTTA AACCTAGGGG ACAATCCGGA TTGGCCCTCC CCCTTTTGTA 5200 AATAACCCAG GAAATGTAAT AAATTCATTA TCTTAGGGTG ATCTGCCCTG 5250 CCAATCAGAC TTTGGGGAGA TGGCGATTTG ATTACAGACG TTCGGGGGGG 5300 TGGGGGGCTT GCAGTTTGTT TTGGAGATAA TACAGTTTCC TGCTATCTGC 5350 CGCTCCTATC TAGAGGCAAC ACTTAAGCAG TAATTGCTGT TGCTTGTTGT 5400 CAAAATTTGA TCATTGTTAA AGGATTGCTG CAAATAAATA CACTTTAATT 5450 TCAGTCAAAA ACTGCTCTAC GTGGCCTGTG ATTCGCTCGG TCCCCTCCCC 5500 CAGGGTCGTA ACCTAATCGC CGGGAAGATC GCAGCGGCGC TGGCGCGGGT 5550 GTCTCCTCGG GGCAGGCGGG CTGGGGGTGG CCTCACGGCC CCGTTTAAAT 5600 CTCGCTGGGC TGTCGCGGCG CTAGGTCCCG GGGCTGCCTC CAGCTTCCTC 5650 GGGTTACAGC CTCTTTCGGG GCGGGGGGAA GGGGAGGGGG TGACGGGAGA 5700 | var(5697):[T:0.4176] GACTCCACCG CCAGTCTCCA GGAGTTTGGT GTGATCGCTC CACTTTGGGG 5750 AGCCCGGCGA GGAGCTGGGA TTTGCGGACA AAGGGCCCGC GGCCGGAGCT 5800 GGGGTGTCGA GGCCCGGAAG GGGAGCTGCA GCAGGTGACT CACGGCCCTG 5850 TCCCCACGGG CGGGCTGGCC CAGCCCGAGG CGGAGCAGCT CGGCCGCCGG 5900 | var(5857):[T:0.0330] AGACGGTACC GTTCTCGACG TGTCCGGTCG GACTCTGTGG AGTAGGGGGT 5950 | var(5929):[G:0.0326] GGCGGGTGGA GACCCGCGCG GCCCACGCCT GGCTTTCCGG CTGGGGCGTT 6000 TCTCGCAGGC CCGGTCCCTT CCGAGTCGCG CCCGCCCCGA CGCCGGCCTC 6050 | var(6007):[G:0.0053] CTGGACGCCG CTCGCGACGG CAACGCTCTC CAGCTAATGA GCTGTAATTA 6100 CCCGCGGCGG CGCGGGGCCC GGCTTCGGTT TGCGTTTGGA GCTCCTTCCT 6150 | var(6117):[A:0.0536] CCCCACACCC CCCTCCCCAG ATTAGCCCCC GGCCTCCGCG GCCTCCTCCT 6200 | var(6180):[:0.9812] GAAATTAGTC GTTGGAGAAA AGCGAGTCAA AGGGAGACCC CTGTTAGTTT 6250 CGCTGGGTTC CTCGCGGGCT GGGTCGGGGT GCCGGGAAGC GCGCGCTGAG 6300 GGAGGGTGGC AGGCGCGCGG TGCCGGGGAC GGGGACGGGG CGGGGGGCGC 6350 CGAGCCGGGA GAAGCGCCCT CGGGGCTCCG GCCGAGAAGC TCGGAGGAGC 6400 CCGCTCCCTC GCCCGGTCAC CCCGCGTCTC CGCCTGGCGC CGCAGGGCCC 6450 CGCCGAGCTC TCACTTCCTC CTCGCTGGCC TCCTTTGTTG TGAAGACGCA 6500 CGTGTGTTTA GGAGCGCAGC TGGGGTGGAA AGGTCAGAGG CACTTCATTG 6550 CTCACGGGTG ACAGCTCGCC CCGCGCCGGC CCGCAGCCTC CAGGCGCGGG 6600 ACCCGGAGCT GCGCGTTTGC AGGGCCACCC CCGGCCCACC CGCCTCGGCC 6650 TGGCCGCACC AGACCTGCCC GGGCCGGCGC TGCGGCCCCA GGCGGCCTCC 6700 CCGGCAGGGC TGCGTCCTCG CGCGGTGTGT GAGGTTTGCA GAGGCCACCA 6750 GTCGCTTGGC AGTGGCCGTG CGGGGAGTCG CTCGGCCTCA AGGATGCCAG 6800 | var(6795):[C:0.1813] AAGCCCTCGG GCGAGCTGCA GGCTCAGCGT GTTCCGAGCC CACGTGCCTG 6850 | var(6835):[T:0.2340] CGACTCTCCA CTCTCCTTGG GTCTCGGCTT TGCGGCCCGG AGGAGGTGGC 6900 | var(6852):[A:0.0053] GGCCGCAGTC AGCCCCGGCC TAGGCCCAGG TCGGCAGTGG AAAGCTCGGC 6950 GGGCTTTTCT GCACCGTTCC CAGCGGCGGG AGCGAGCTGC TGGGGGGACC 7000 | var(6990):[:0.3152] TGGGCGAGGG AAAGAGTCGA CCCGCTCCCG GCTGGGGGCC CTGCCGAGTC 7050 TGGCCTGCCG AGGAGTGGGC CGAGAGCAGC CCCTGTCCTT CCTTGCGGGG 7100 CTCCAGTCCC AGCTGCAGGA GAGGAAGCGG GTACGGGGCG AAGCGCGGTG 7150 CTTCGGTTTC CGTGGCCAGC GAGGAGCCCC TGGCCCACAG GTCGAGAGTG 7200 TTTATAGGCG TGCGCGAGCA AAGCTTCTTA GCAACTTGCT TTACCCTCTT 7250 CTATTCGAAT GTTTGAAAAT TAGGCATGAA ACACACATGT GTCTAAGAAG 7300 GTGTTTGTGT TAAACATACA TGACGTAGTC ATTTCTGCAC TCGTTGCCTG 7350 TGCAAGTTTA GAAGCTATGT TGAGTGGAAG GAGAGAAGTT CTGCTCATTA 7400 TTCGGATT