LOCUS FOXC1 7408 bp DNA linear PRI 22-APR-2008 DEFINITION Homo sapiens FOXC1 forkhead box C1 (FOXC1) gene, complete cds. ACCESSION FOXC1 VERSION tmp KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 7408) AUTHORS Livingston,R.J., Rieder,M.J., Shaffer,T., Bertucci,C., Baier,C.N., Rajkumar,N., Willa,H.T.., Stanaway,I.B., Nguyen,C.P., Gildersleeve,H., Johnson,E.J., Swanson,J.E., McFarland,I., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (22-APR-2008) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..7408 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 163 /frequency="0.0724" /replace="A" variation 195 /frequency="0.0063" /replace="A" variation 533 /frequency="0.0053" /replace="T" variation 542 /frequency="0.0053" /replace="T" variation 598 /frequency="0.0053" /replace="T" variation 950 /frequency="0.0056" /replace="T" variation 1011 /frequency="0.4222" /replace="T" variation 1105 /frequency="0.0120" /replace="A" variation 1570 /frequency="0.0064" /replace="G" variation 1941..1945 /frequency="0.9940" /replace="" variation 1951 /frequency="0.0060" /replace="T" gene 2004..5461 /gene="FOXC1" mRNA 2004..5461 /gene="FOXC1" /product="foxc1" CDS 2004..3671 /gene="FOXC1" /codon_start=1 /product="FOXC1 forkhead box C1" /translation="MQARYSVSSPNSLGVVPYLGGEQSYYRAAAAAAGGGYTAMPAPM SVYSHPAHAEQYPGGMARAYGPYTPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLN GIYQFIMDRFPFYRDNKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYN MFENGSFLRRRRRFKKKDAVKDKEEKDRLHLKEPPPPGRQPPPAPPEQADGNAPGPQP PPVRIQDIKTENGTCPSPPQPLSPAAALGSGSAAAVPKIESPDSSSSSLSSGSSPPGS LPSARPLSLDGADSAPPPPAPSAPPPHHSQGFSVDNIMTSLRGSPQSAAAELSSGLLA SAAASSRAGIAPPLALGAYSPGQSSLYSSPCSQTSSAGSSGGGGGGGAGAAGGAGGAG TYHCNLQAMSLYAAGERGGHLQGAPGGAGGSAVDDPLPDYSLPPVTSSSSSSLSHGGG GGGGGGGGQEAGHHPAAHQGRLTSWYLNQAGGDLGHLASAAAAAAAAGYPGQQQNFHS VREMFESQRIGLNNSPVNGNSSCQMAFPSSQSLYRTSGAFVYDCSKF" variation 2408 /gene="FOXC1" /frequency="0.0263" /replace="T" variation 2892 /gene="FOXC1" /frequency="0.0141" /replace="T" variation 3145..3147 /gene="FOXC1" /frequency="0.6937" /replace="" variation 3339 /gene="FOXC1" /frequency="0.0054" /replace="C" variation 3462 /gene="FOXC1" /frequency="0.0058" /replace="C" variation 3572 /gene="FOXC1" /frequency="0.0211" /replace="G" variation 3723 /gene="FOXC1" /frequency="0.0215" /replace="A" variation 4218 /gene="FOXC1" /frequency="0.0316" /replace="A" variation 4247 /gene="FOXC1" /frequency="0.0211" /replace="C" variation 4331..4334 /gene="FOXC1" /frequency="0.0053" /replace="" variation 4858 /gene="FOXC1" /frequency="0.2000" /replace="A" variation 4899 /gene="FOXC1" /frequency="0.0158" /replace="A" variation 4922..4923 /gene="FOXC1" /frequency="0.0053" /replace="" variation 5015 /gene="FOXC1" /frequency="0.3053" /replace="A" variation 5697 /frequency="0.4176" /replace="T" variation 5857 /frequency="0.0330" /replace="T" variation 5929 /frequency="0.0326" /replace="G" variation 6007 /frequency="0.0053" /replace="G" variation 6117 /frequency="0.0536" /replace="A" variation 6180 /frequency="0.9812" /replace="" variation 6795 /frequency="0.1813" /replace="C" variation 6835 /frequency="0.2340" /replace="T" variation 6852 /frequency="0.0053" /replace="A" variation 6990..7008 /frequency="0.3152" /replace="" BASE COUNT 1404 a 2254 c 2335 g 1415 t ORIGIN 1 tttaatagat ggtcggaaat caggggcagc ggagctgtta aatgcgtcac gcacgcttct 61 tcgcagtctc ctgagctcgc cacttccccc agcttctagt gaacgacttg ggattcagcc 121 tccgggaggg tctctcctca agtcgctaaa atgcagaatc gccgtgccgg gggagggagg 181 cctggctctt tcccgctcct tcgtttcttt ccctcatttc tcttcttcct gtcccattcc 241 aaccacccag cgacggcgaa tctcaggcgt gtgcacaacg agcgggggcc cttccgtgcg 301 tgtcccccca gaatccttga accgccctct aggtgcgacc ctggacgttc ccccagacac 361 acccgttgtc tctgcgagcc ggcagccccg cgcatgtgga gatggagact ggcctgggga 421 agcgttaagc tcttagacat atttatttgc ttcttgtcat cacacctgct aatgtcaccg 481 agcccgcagc ctgacccctc atctgagccg aaacgggcct gacgggatca gagggggcgg 541 cggcgcggcg agccggtggg accctcgcgg gcgggcaggg gagcgcgggg cagcagccgg 601 gctccggcag ccctcgccgc ccgcaccctc aggccgccaa gggccggccc cccggggagg 661 ggggcgagaa gcagggcggc ccgcagcggg gcgggctcat ccttcgcggg tgaacggccg 721 tcggaaactc ccagcagggc cccgcacccc ttgccttcat ttcggctggg gaggggtcat 781 ggaggggggc cagatgggcg acgaaccttc ttccccaccg cgagcagggc ctggctgtga 841 ccgagccctc aaaatcatgt cctttgtagc cgagttcagg acaggagaac ctccaagtgg 901 agaaaagccg gagacgtcag tgacccgagt gagactggcg ttggagaagg gagggaaggg 961 gctgcgggag gggagaggcg gcggggagga gaggctgggg caaccccagc gctggcgtcg 1021 gcggggctgg cgaaggaatg agagcgagcc agcacgaggc ggggcggaga cgccagggcc 1081 actcgggagc cgtgggcgaa ggaagggtct gcacggggtc ccgggaggac ccaggaagtc 1141 tgcgcgaacg gcgggcgtgg gtccggaggg cccggggtgg gaggtctgcc gggcgccggc 1201 ggcaggcagg tggactgcgg ggggcgaacc gacggcgggc cgggcgccgg cgcgggcgca 1261 gggccggggc ccgggccagg gcggccggcg cgcgtgtggt cagccccgcg gtcctccggc 1321 ctccgggagc gggccggcag ggctcggcct ccggctcatt cggaggcggt tctcacctcc 1381 cattggctgc cgccgctggc ggggcggggc tccgctgccc ggaaaaaagt gtaactgcgt 1441 aaaaaagtcc tcgcctgggt gacggatgct caaaagttca gaagttttcc caatgcttcc 1501 ttaagcggct ggcgcgcgag agaccgagaa aaggtgacgc ggggcccggg caggcggccg 1561 gcgcgcggcc cccccccccc ccgccctggt tatttggccg ccttcgccgg cagctcaggg 1621 cagagtctcc tggaaggcgc aggcagtgtg gcgagaaggg cgcctgcttg ttctttcttt 1681 ttgtctgctt tcccccgttt gcgcctggaa gctgcgccgc gagttcctgc aaggcggtct 1741 gccgcggccg ggcccggcct tctcccctcg cagcgacccc gcctcgcggc cgcgcgggcc 1801 ccgaggtagc ccgaggcgcc ggaggagcca gccccagcga gcgccgggag aggcggcagc 1861 gcagccggac gcacagcgca gcgggccggc accagctcgg ccgggcccgg actcggactc 1921 ggcggccggc gcggcgcggc gcggcccggc ccgagcgagg gtggggggcg gcgggcggcg 1981 cggggcggcg gcgagcgggg gccatgcagg cgcgctactc cgtgtccagc cccaactccc 2041 tgggagtggt gccctacctc ggcggcgagc agagctacta ccgcgcggcg gccgcggcgg 2101 ccgggggcgg ctacaccgcc atgccggccc ccatgagcgt gtactcgcac cctgcgcacg 2161 ccgagcagta cccgggcggc atggcccgcg cctacgggcc ctacacgccg cagccgcagc 2221 ccaaggacat ggtgaagccg ccctatagct acatcgcgct catcaccatg gccatccaga 2281 acgccccgga caagaagatc accctgaacg gcatctacca gttcatcatg gaccgcttcc 2341 ccttctaccg ggacaacaag cagggctggc agaacagcat ccgccacaac ctctcgctca 2401 acgagtgctt cgtcaaggtg ccgcgcgacg acaagaagcc gggcaagggc agctactgga 2461 cgctggaccc ggactcctac aacatgttcg agaacggcag cttcctgcgg cggcggcggc 2521 gcttcaagaa gaaggacgcg gtgaaggaca aggaggagaa ggacaggctg cacctcaagg 2581 agccgccccc gcccggccgc cagcccccgc ccgcgccgcc ggagcaggcc gacggcaacg 2641 cgcccggtcc gcagccgccg cccgtgcgca tccaggacat caagaccgag aacggtacgt 2701 gcccctcgcc gccccagccc ctgtccccgg ccgccgccct gggcagcggc agcgccgccg 2761 cggtgcccaa gatcgagagc cccgacagca gcagcagcag cctgtccagc gggagcagcc 2821 ccccgggcag cctgccgtcg gcgcggccgc tcagcctgga cggtgcggat tccgcgccgc 2881 cgccgcccgc gccctccgcc ccgccgccgc accatagcca gggcttcagc gtggacaaca 2941 tcatgacgtc gctgcggggg tcgccgcaga gcgcggccgc ggagctcagc tccggccttc 3001 tggcctcggc ggccgcgtcc tcgcgcgcgg ggatcgcacc cccgctggcg ctcggcgcct 3061 actcgcccgg ccagagctcc ctctacagct ccccctgcag ccagacctcc agcgcgggca 3121 gctcgggcgg cggcggcggc ggcggcgcgg gggccgcggg gggcgcgggc ggcgccggga 3181 cctaccactg caacctgcaa gccatgagcc tgtacgcggc cggcgagcgc gggggccact 3241 tgcagggcgc gcccgggggc gcgggcggct cggccgtgga cgaccccctg cccgactact 3301 ctctgcctcc ggtcaccagc agcagctcgt cgtccctgag tcacggcggc ggcggcggcg 3361 gcggcggcgg gggaggccag gaggccggcc accaccctgc ggcccaccaa ggccgcctca 3421 cctcgtggta cctgaaccag gcgggcggag acctgggcca cttggcgagc gcggcggcgg 3481 cggcggcggc cgcaggctac ccgggccagc agcagaactt ccactcggtg cgggagatgt 3541 tcgagtcaca gaggatcggc ttgaacaact ctccagtgaa cgggaatagt agctgtcaaa 3601 tggccttccc ttccagccag tctctgtacc gcacgtccgg agctttcgtc tacgactgta 3661 gcaagttttg acacaccctc aaagccgaac taaatcgaac cccaaagcag gaaaagctaa 3721 aggaacccat caaggcaaaa tcgaaactaa aaaaaaaaaa tccaattaaa aaaaacccct 3781 gagaatattc accacaccag cgaacagaat atccctccaa aaattcagct caccagcacc 3841 agcacgaaga aaactctatt ttcttaaccg attaattcag agccacctcc actttgcctt 3901 gtctaaataa acaaacccgt aaactgtttt atacagagac agcaaaatct tggtttatta 3961 aaggacagtg ttactccaga taacacgtaa gtttcttctt gcttttcaga gacctgcttt 4021 cccctcctcc cgtctcccct ctcttgcctt cttccttgcc tctcacctgt aagatattat 4081 tttatcctat gttgaaggga gggggaaagt ccccgtttat gaaagtcgct ttctttttat 4141 tcatggactt gttttaaaat gtaaattgca acatagtaat ttatttttaa tttgtagttg 4201 gatgtcgtgg accaaacgcc agaaagtgtt cccaaaacct gacgttaaat tgcctgaaac 4261 tttaaattgt gctttttttc tcattataaa aagggaaact gtattaatct tattctatcc 4321 tcttttcttt ctttttgttg aacatattca ttgtttgttt attaataaat taccattcag 4381 tttgaatgag acctatatgt ctggatactt taatagagct ttaattatta cgaaaaaaga 4441 tttcagagat aaaacactag aagttaccta ttctccacct aaatctctga aaaatggaga 4501 aaccctctga ctagtccatg tcaaatttta ctaaaagtct ttttgtttag atttattttc 4561 ctgcagcatc ttctgcaaaa tgtactatat agtcagcttg ctttgaggct agtaaaaaga 4621 tatttttcta aacagattgg agttggcata taaacaaata cgttttctca ctaatgacag 4681 tccatgattc ggaaatttta agcccatgaa tcagccgcgg tcttaccacg gtgatgcctg 4741 tgtgccgaga gatgggactg tgcggccaga tatgcacaga taaatatttg gcttgtgtat 4801 tccatataaa attgcagtgc atattataca tccctgtgag ccagatgctg aatagatttt 4861 ttcctattat ttcagtcctt tataaaagga aaaataaacc agtttttaaa tgtatgtata 4921 taattctccc ccatttacaa tccttcatgt attacataga aggattgctt ttttaaaaat 4981 atactgcggg ttggaaaggg atatttaatc tttgggaaac tattttagaa aatatgtttg 5041 tagaacaatt atttttgaaa aagatttaaa gcaataacaa gaaggaaggc gagaggagca 5101 gaacattttg gtctagggtg gtttcttttt aaaccatttt ttcttgttaa tttacagtta 5161 aacctagggg acaatccgga ttggccctcc cccttttgta aataacccag gaaatgtaat 5221 aaattcatta tcttagggtg atctgccctg ccaatcagac tttggggaga tggcgatttg 5281 attacagacg ttcggggggg tggggggctt gcagtttgtt ttggagataa tacagtttcc 5341 tgctatctgc cgctcctatc tagaggcaac acttaagcag taattgctgt tgcttgttgt 5401 caaaatttga tcattgttaa aggattgctg caaataaata cactttaatt tcagtcaaaa 5461 actgctctac gtggcctgtg attcgctcgg tcccctcccc cagggtcgta acctaatcgc 5521 cgggaagatc gcagcggcgc tggcgcgggt gtctcctcgg ggcaggcggg ctgggggtgg 5581 cctcacggcc ccgtttaaat ctcgctgggc tgtcgcggcg ctaggtcccg gggctgcctc 5641 cagcttcctc gggttacagc ctctttcggg gcggggggaa ggggaggggg tgacgggaga 5701 gactccaccg ccagtctcca ggagtttggt gtgatcgctc cactttgggg agcccggcga 5761 ggagctggga tttgcggaca aagggcccgc ggccggagct ggggtgtcga ggcccggaag 5821 gggagctgca gcaggtgact cacggccctg tccccacggg cgggctggcc cagcccgagg 5881 cggagcagct cggccgccgg agacggtacc gttctcgacg tgtccggtcg gactctgtgg 5941 agtagggggt ggcgggtgga gacccgcgcg gcccacgcct ggctttccgg ctggggcgtt 6001 tctcgcaggc ccggtccctt ccgagtcgcg cccgccccga cgccggcctc ctggacgccg 6061 ctcgcgacgg caacgctctc cagctaatga gctgtaatta cccgcggcgg cgcggggccc 6121 ggcttcggtt tgcgtttgga gctccttcct ccccacaccc ccctccccag attagccccc 6181 ggcctccgcg gcctcctcct gaaattagtc gttggagaaa agcgagtcaa agggagaccc 6241 ctgttagttt cgctgggttc ctcgcgggct gggtcggggt gccgggaagc gcgcgctgag 6301 ggagggtggc aggcgcgcgg tgccggggac ggggacgggg cggggggcgc cgagccggga 6361 gaagcgccct cggggctccg gccgagaagc tcggaggagc ccgctccctc gcccggtcac 6421 cccgcgtctc cgcctggcgc cgcagggccc cgccgagctc tcacttcctc ctcgctggcc 6481 tcctttgttg tgaagacgca cgtgtgttta ggagcgcagc tggggtggaa aggtcagagg 6541 cacttcattg ctcacgggtg acagctcgcc ccgcgccggc ccgcagcctc caggcgcggg 6601 acccggagct gcgcgtttgc agggccaccc ccggcccacc cgcctcggcc tggccgcacc 6661 agacctgccc gggccggcgc tgcggcccca ggcggcctcc ccggcagggc tgcgtcctcg 6721 cgcggtgtgt gaggtttgca gaggccacca gtcgcttggc agtggccgtg cggggagtcg 6781 ctcggcctca aggatgccag aagccctcgg gcgagctgca ggctcagcgt gttccgagcc 6841 cacgtgcctg cgactctcca ctctccttgg gtctcggctt tgcggcccgg aggaggtggc 6901 ggccgcagtc agccccggcc taggcccagg tcggcagtgg aaagctcggc gggcttttct 6961 gcaccgttcc cagcggcggg agcgagctgc tggggggacc tgggcgaggg aaagagtcga 7021 cccgctcccg gctgggggcc ctgccgagtc tggcctgccg aggagtgggc cgagagcagc 7081 ccctgtcctt ccttgcgggg ctccagtccc agctgcagga gaggaagcgg gtacggggcg 7141 aagcgcggtg cttcggtttc cgtggccagc gaggagcccc tggcccacag gtcgagagtg 7201 tttataggcg tgcgcgagca aagcttctta gcaacttgct ttaccctctt ctattcgaat 7261 gtttgaaaat taggcatgaa acacacatgt gtctaagaag gtgtttgtgt taaacataca 7321 tgacgtagtc atttctgcac tcgttgcctg tgcaagttta gaagctatgt tgagtggaag 7381 gagagaagtt ctgctcatta ttcggatt //