FMO4 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
CAGGATTCTA AAAGTAACCA ATCGTGGGGA GAATTGAGAA AAGG
G
C
A
T
T
C
50 |
REPEAT
T
G
A
T
A
A
G
A
C
A
G
A
A
A
C
A
G
G
A
C
A
T
G
G
G
A
G
G
G
G
A
C
A
A
A
T
A
A
G
A
G
A
A
A
G
C
T
G
G
C
100
C
A
C
C
C
C
A
G
C
C
A
G
C
G
G
C
A
G
C
A
A
C
T
G
G
C
T
C
G
G
G
T
C
C
C
C
T
T
C
C
A
C
T
C
T
G
T
G
G
A
150 |
var(109):[A:0.01]
|
REPEAT
A
G
C
T
T
T
G
T
T
C
T
T
T
C
G
C
T
C
T
T
C
A
C
A
A
T
A
A
A
T
C
T
T
G
C
T
G
C
T
G
C
T
C
A
C
T
C
T
T
T
200
G
G
G
T
C
T
G
TG
C
C
A
T
C
T
T
T
T
A
A
G
A
A
C
T
G
T
A
A
C
A
C
T
C
A
C
C
A
C
A
A
A
G
G
T
C
C
G
C
A
250 |
REPEAT
G
C
T
C
C
A
T
T
C
T
T
G
A
A
G
T
C
A
G
G
G
A
G
A
C
C
A
G
G
A
A
C
C
C
A
C
C
G
G
A
A
G
G
A
A
C
T
A
A
C
300 |
var(251):[T:0.01]
T
C
T
G
G
A
C
A
C
A
ATATTTTTTT TTCTTTTTTT AAA
T
T
T
T
T
T
T
C
T
T
T
A
T
T
T
C
T
350 |
REPEAT
T
C
T
A
A
A
A
A
A
A
A
G
T
G
G
G
A
T
G
C
A
T
G
T
G
C
A
G
A
A
C
G
T
G
C
A
G
G
T
T
T
G
T
T
G
C
A
T
A
G
400
G
T
A
C
A
C
G
T
G
T
G
C
C
A
T
G
G
T
G
A
T
T
T
G
C
T
G
C
A
C
C
T
A
T
T
G
A
C
C
T
G
T
T
C
T
C
C
T
C
T
450 |
var(426):[C:0.25]
A
A
G
T
T
C
C
C
T
C
T
C
C
T
C
A
C
C
C
C
C
T
A
C
C
C
T
A
C
A
A
C
A
G
G
C
C
C
T
A
C
A
A
C
A
T
T
C
C
C
500 |
var(456):[G:0.01]
C
T
C
T
C
T
G
T
G
T
C
C
A
T
G
T
G
T
T
C
T
C
A
T
T
G
T
T
C
A
A
C
T
C
C
C
A
C
T
T
A
T
G
A
G
T
G
A
G
A
550
A
C
A
T
G
C
A
G
T
G
T
T
T
G
G
T
T
T
T
C
T
G
T
T
C
C
T
G
T
G
T
T
A
G
T
T
T
G
C
T
G
A
G
G
A
T
G
A
T
G
600
G
C
T
T
C
C
A
G
C
T
T
C
A
T
C
C
A
T
G
T
C
C
C
T
G
C
A
A
A
G
G
A
C
A
T
G
A
T
C
T
T
A
T
T
T
C
T
T
T
T
650
T
A
T
G
G
C
T
G
C
A
T
A
A
T
A
T
T
C
C
A
T
G
A
T
A
T
TTTT CAAAAGAAAA T
A
T
T
T
G
C
T
G
C
700 |
REPEAT
C
A
A
C
A
G
A
A
G
A
T
T
T
T
A
T
A
T
T
A
A
A
A
T
C
T
G
T
A
T
T
T
G
C
A
G
C
T
T
T
T
A
C
T
G
A
A
A
A
G
750
A
A
C
C
T
A
A
G
G
C
C
T
T
G
C
C
A
T
A
T
T
G
G
G
C
T
C
A
T
T
T
T
C
T
C
A
A
A
T
A
G
C
A
A
C
A
T
T
T
A
800
G
C
T
G
A
A
C
T
G
A
A
T
A
G
A
C
A
G
A
G
A
A
A
G
T
A
C
T
T
T
C
C
A
G
T
C
A
G
A
T
C
A
T
A
T
C
T
G
G
C
850
C
C
A
C
T
T
T
C
C
T
C
G
T
G
T
A
T
G
T
T
A
C
C
C
T
C
C
T
C
A
C
T
C
C
T
G
T
A
G
G
C
A
T
T
T
G
CATG
900
TGTAGTCACA AGCAAATGTG GTTTAGAAAT TGTTCAGTGA ACCATGTTGG
950
AAAATGTCCC TAAACACAAG TCCTAAAGAT GGTCTGTTAT ATTATCTTAC
1000
AAGCACACAG TG
G
AAGGAAA AACAGTTAAG TTTTCTATTT CTGCCACAGC
1050 |
var(1013):[A:0.04]
TTCTATAATT ATTACCTTTC TTGTGCCCTA GGTTAATATC TAAAAATAGC
1100
TTTATG
C
TTT CTCAAACACA TTTCACCAGC TCCCTCTGCT GATCCAATCT
1150 |
var(1107):[A:0.21]
GAAGGACAAA ACAGCTTAAA TTCCTTGTAA GTCCTGAACT TTAAAATCAC
1200
ATTTCTGGGG TTGGAGAACT CCAAGCATGA AAGAACTTGA TGAGGTAATG
1250
GTCATCTAAA TAACTTTCTC CTTTGGACAG CTCCTATGGT AATCCAAGCA
1300
AGAGTCAGGG TGTAGAAGTT TGTTTCCAAA AGTAGAACTC CTGTTTCGCT
1350
GAGAAAGCTG TAATTTGGGG TGATTTGGCG CCCTCTACAG ACTATAATGG
1400
CAAAAGCGAC GCTATCATGT GCTTCCCATA GCTTTAGGGC TTTGCCAGAA
1450
CTATGACGTT GAGGAGGGTG GGGTAAAGGG GCAGGAAGCG TTTATGTTCT
1500
GCCAATCCA
A
CAGCTGTATT CTAACTCACC ATTCCGCCCT CCCTTAAGAT
1550 |
var(1510):[G:0.01]
CACGGAAGTA TCACGCTTGC CTCTTACACA ACTTTTTTTC CTTAGTCTGT
1600
ATACTTTCTG CTGTCACTAG CATAACAGAA AAGACGAATG GCTTTTGTTT
1650
TAAACTGAGG GCACTTTTAC AAAAGTCATC TTTCCATTTA TTTTTCTTTC
1700
AGAAAAAAGA ATTTGGGTTT TGAGCTTTTT
T
AAAAAAAA
A
A
G
A
C
A
A
A
C
A
C
1750 |
var(1731):[A:0.04]
| Exon 1 |
UTR
T
T
T
C
C
T
T
G
A
C
T
T
T
G
A
G
A
A
A
T
A
A
T
T
T
A
A
G
T
C
A
A
A
G
A
A
T
C
T
G
C
T
C
T
A
T
G
C
T
A
1800
A
C
C
A
A
G
GTAA GTGTCCTGGA TTTTTTTTTT AATGGGGAAA TGATCCAGAA
1850
ACTGCTTTCA CAAAAGATGA ATGTTTTTCT TGGAGTGTGT TCCTTAAGAA
1900
TGAATGTGAT TATCTTCTTT TGGGGTCTCT TGACTAGGGC TAAAGCAAGA
1950
GAATTAAGGA GAGAGTCAGG AAGCAAAGGG AAGTTGTAAG GAAACAAAGT
2000
TATGTTGTGG ACAGAACCAT CCAAAAGGAA AGTGTCAGTG AGATAAACAG
2050
AATCATGAGA CTTTCAGTGA CTCCAGTGAC CTCTGATTTC ATCTTATGAA
2100
TGAGATGGAA ATGCCAGCCA
T
TGGGAAACA AATACCCCAT AGATGG
C
GTG
2150 |
var(2121):[C:0.03]
|
var(2147):[T:0.03]
GGAAAAAAAT ACTGTAACAA AGCAAGAGCA TGGTAGGATG ATGATAAGAA
2200
ACATAAAATG ATCAAATTTC AAATTCAAAG AAATCATAAT TGATTACATG
2250
ATTTGCAAAT CACCCAAGTC TCTCCATGTC TCATAAAGGA TTCCTACATT
2300
TGCTGGTCAG TCAGGTATAG GGTGGGGTTT TCCCGTTGTA CAAAGGTCTA
2350
GTTCAATAGG TCAGGTCTCC TTTCTGCCAA GGGACTAAAT ATAAGCAACC
2400
TATGGCT
G
G
C
A
C
G
G
T
G
G
C
T
C
A
C
G
C
C
T
G
T
A
A
T
C
C
C
A
G
C
A
C
T
T
T
G
G
A
A
A
G
C
C
2450 |
REPEAT
G
A
G
G
A
G
G
G
C
A
G
A
C
C
A
C
T
T
G
A
G
A
T
C
A
G
G
A
G
T
T
T
G
A
G
A
C
C
A
G
C
C
T
G
A
C
C
A
A
C
2500
A
T
G
G
T
G
A
A
A
C
C
C
C
G
T
C
T
C
T
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
A
T
T
A
G
C
C
A
G
G
C
G
T
G
G
T
2550 |
var(2539):[T:0.11]
G
C
C
G
C
C
T
G
C
C
T
G
T
A
G
T
C
T
C
A
G
C
T
A
C
T
C
A
G
G
A
G
G
C
T
G
A
G
G
C
A
G
G
A
G
A
A
T
C
A
2600 |
NOT SCANNED
C
T
T
G
A
A
C
C
C
A
G
G
A
G
G
T
G
G
A
G
G
T
T
G
C
A
G
T
G
A
G
C
C
G
A
A
A
T
T
G
T
G
C
C
A
C
T
G
C
A
2650
T
T
C
C
A
G
C
C
T
G
G
A
A
G
A
C
A
G
A
G
T
G
A
G
A
C
T
C
C
A
A
C
T
C
A
A
A
T
A
A
A
T
A
A
A
T
A
A
A
T
2700
A
A
A
T
A
T
A
AGC ACCTTTGAGC AACCAAGTAC CTTATGAAGT CCACTTTATA
2750
GTTTGCAGAG TTTGCACACA CGTTCTCCCA ATCCTTCAAG CCTGCAGTAT
2800
TCTCGCCTAC CTTTGAATTC ATATCTTTTT TTTTTTGTGC ACCAATTACT
2850
TGGTTTTCAG ACATAAGAAC AGTCCTTTCA
A
G
C
T
T
G
A
A
G
G
A
A
A
C
A
A
A
G
A
G
2900 |
REPEAT
A
A
A
G
C
C
A
C
T
T
G
A
A
C
C
C
T
C
T
G
T
T
T
T
A
C
A
A
A
T
G
T
G
G
A
A
G
C
A
C
T
G
G
C
T
C
A
G
A
G
2950
A
A
A
T
T
G
A
G
A
A
T
T
G
T
G
T
C
C
A
G
G
G
T
T
A
C
A
A
G
C
T
G
C
T
T
A
G
A
G
G
C
A
G
A
A
G
C
A
G
A
3000
A
C
T
A
G
A
A
C
T
C
A
G
A
T
C
T
C
T
C
A
A
T
T
T
C
C
A
G
T
T
C
ACTCACTAC CTTCCTCTAC
3050
TGACTCAAGG CAAAATTTAA AAAGGTTGCT CCCATTCAGA AATTTATAGT
3100
CTGTAAATAC
G
GATTAATT
T
TAAAAGGTGC TAATTCCCAA TTTGTTTCTA
3150 |
var(3111):[A:0.01]
|
var(3120):[G:0.01]
CTGCCTGTAG AGTCTCTAAG TCAGTCCTTA AAGTGCTTTT GCCCAGCACG
3200
TTTTTAACCC CACAGGCCAC TCTGTGTCAC TAACTAGGTC TCTAGACAGG
3250
GATAATAAAC AGGCCAGGAG AGTGCAAGCA TTCATGCCTA GAGCATGCTG
3300
CTACCATAGG ACTTAGCACA AGGTAGTATC AGCCTCTCCA TATACAACAT
3350
CTTAAGAGCA GTCACGGTCT TTTTTAAATT CTAAGACTTT ACTACTATTT
3400
CTTAGTTGCA GGGTCTTCAT TATCTTCAGG G
C
C
C
C
A
T
A
C
T
T
A
G
C
T
T
A
G
G
A
3450 |
REPEAT
C
C
T
G
C
A
C
T
T
A
G
A
G
G
T
A
C
C
C
A
G
G
G
C
A
T
A
T
T
T
G
T
T
G
A
A
T
G
A
A
T
T
A
A
T
TTGCT
3500
TCCAGTCTAT TCACGTCAGT ATATTTTTCA CTTTGGCAAT TCAGTTAGCA
3550
GTCA
T
TTCTT TTTACCTTAT GATTGCAG
A
G
A
T
A
G
A
G
C
A
C
A
G
C
A
A
A
G
A
T
C
T
3600 |
var(3555):[C:0.01]
| Exon 2 |
UTR
G
C
C
A
G
C
C
C
C
A
G
G
C
C
T
C
T
A
C
C
T
A
G
T
G
G
C
C
T
G
G
A
A
A
T
T
C
A
A
G
T
A
T
T
C
T
T
A
T
T
3650
G
G
T
G
G
A
G
G
C
C
A
T
T
T
G
T
T
T
C
T
G
A
T
T
A
G
A
A
G
C
T
G
T
C
T
A
A
A
C
C
T
C
C
T
A
C
T
C
C
T
3700
C
A
A
C
T
C
A
A
A
G
G
A
A
A
A
C
A
C
A
G
GTATGTCTGC CTACTCCTTT CCAAACTTGT
3750
TGATACATTT T
A
TCTGTATG AACTGTCTTT TCCAAGGAGA AGAGAAGGAA
3800 |
var(3762):[G:0.01]
GACAGGAGAC AAGTAGGGAG GTAGAGAATG AAC
A
C
T
G
A
G
T
A
A
A
T
A
T
T
T
T
G
3850 |
REPEAT
T
G
C
A
A
G
G
C
A
C
T
T
T
T
T
T
G
T
G
T
A
A
G
T
A
A
T
A
T
C
A
A
G
T
T
T
T
T
T
A
A
A
A
T
G
C
A
A
A
C
3900
A
A
T
C
C
T
T
C
A
A
C
A
T
A
G
A
T
A
T
T
T
T
T
A
T
T
A
T
T
T
T
A
C
A
A
A
T
A
A
T
A
T
A
T
C
T
A
A
G
G
3950
T
T
G
C
T
T
C
A
G
T
C
G
G
T
T
G
C
T
C
A
G
G
G
T
C
A
T
A
T
G
G
C
T
A
G
T
T
G
G
T
A
G
C
A
G
A
G
A
A
A
4000
G
T
T
C
A
A
A
C
C
C
A
A
C
T
C
T
G
C
T
G
C
C
T
C
C
A
A
A
A
T
C
C
A
T
T
T
T
C
AT TGCATTCCAT
4050
ATAGCTCTCT CAACTAAATA GGGACTCCCA AATAAAAAGT CTAAGAGGAA
4100
AAATGATGCA TTTTTTAATA CATAATGAAG CCAGGTATGG CAATCTCAGC
4150
CTTACAAAGG CAAGGCAGCA AATACATTCA GAAATTGGCA GCCCTAGGAA
4200
ATCCTTCTGA TCCTCATTGC AAGTTCATGA ATCTGCCTTA GGGTCAGGTA
4250
AGTCTAAGGG TTCCTGGAGG ACTCAGGAGT CTTTCTTTAC TCCCTCCAGT
4300
CAGTAAATTC TCTTAGATTT TGTGCCTGGG GCTTCTGATC TGATTAAGAG
4350
ACAAGCTACA GAGCCATAGA GAAAAACTCC AAGCCCATCC CAAAGGTGCA
4400
GCAGCAAACC TGAGCAAAGA TGAAGGAAGA GGCTTAGTGA CGGGAACCAC
4450
AGGATACCTC AGGCTCTCAG ACCAACAGCA TGTTCACATC TTGGTTTCAG
4500
ATCCTGAAAT CCATACTCAG TGCAAACTCT GCCTCTTAAT AGCAGTGTAG
4550
TCTTAAGTTG TTTCAAATGA TTATGCTGAT TTCCCATTTA CTGGTCCTAA
4600
TAGCTCAAAA AATATATGCT CTCTTGTTTC CCCAAGGCAA ATACCACTGT
4650
GATAAGTGAC ATGAGACTAC AAAAATCACA CAGGGGTTAT ACAGCTTGAT
4700
CTTTCCTCAA AAAATGCTGT ATCTTCAAAG GCAAAGTGAA ATGAGTTATA
4750
TATATTTCAT AAAACAATGG AATACTTTGA GGTCTCAACT ATCATTTGTG
4800
TGTCTTCTGA ATTGGCCAAG TGGGTTGCAG GGAAATGCAG GGAAAAGCAG
4850
CACTTGCAAC TAAGTCTACA TGACATATTA AGGGCCTCAG TGTGACATAA
4900
ACTTGATTTA CTAGAATTAA CTCAGCCCAT TTGATTGAGG CAAAAGCAAT
4950
GTGATATGTG CAGAAATGAT AAAATCCAGA AAAACTGGTA AAAACTGGTC
5000
CTATATCTCC ATGTGTGTGT ATGTGTATAC TTCCTCCAGT TCCCGCTGAC
5050
AAGCATGAGC ATCCCCATTT CTAGCTGACA TCATCGTGGG CTCTAGAATA
5100
TCCCTTATGA CGTTCCTTGG GGACTTTATT TTCTATTATG GTCAGTCTTG
5150
CCTCTGCAAG CTAAGAACCT CCCCTCAACC CATGTAATAT CCTTGTTTTA
5200
TGGCAAGGCA TGACCGTGAC CAGCTATTCT TTAGGACTCT AAATGCTTTG
5250
AATCAAAACC AACATTTCTA CTGACTGAAA TTCCTAGGAT TCAGAGGCAA
5300
AGTGATAGCA AAGAGCCCCT TTAATACTGA CAAATTCTAG CATCCCAACG
5350
GGGTCAAGGT ACTGTCTACA CTCTCTAATA GTAATACCA
C
A
G
A
T
T
G
A
G
T
A
5400 |
REPEAT
C
T
C
C
T
T
A
T
C
C
A
A
A
A
T
A
C
T
T
G
G
G
A
C
C
A
G
G
C
C
G
G
G
C
A
C
G
G
T
G
G
C
T
T
A
C
G
T
C
T
5450 |
REPEAT
G
T
A
A
T
C
C
C
A
G
C
A
C
T
T
T
G
G
G
A
G
G
C
T
G
A
G
G
C
C
A
G
C
A
G
A
T
C
A
C
T
T
G
A
G
G
T
C
A
G
5500
G
A
G
T
T
T
G
A
G
A
C
C
A
G
C
C
T
G
G
C
C
A
A
C
A
T
G
G
T
G
A
A
A
C
C
C
C
A
T
G
T
C
T
A
C
T
A
A
A
A
5550
A
A
T
A
C
A
A
A
A
A
T
T
A
G
C
T
G
G
G
C
G
T
G
G
T
G
A
C
A
G
G
C
A
C
C
T
G
T
A
A
T
C
C
C
A
G
C
T
A
C
5600
T
T
G
G
G
A
G
G
C
T
G
A
G
G
C
A
T
A
A
G
A
A
T
C
A
C
T
T
G
A
A
C
C
T
A
G
G
A
A
G
T
G
G
A
G
G
T
T
G
C
5650
A
G
T
G
A
G
C
T
G
A
G
A
T
T
G
T
G
C
C
A
C
T
G
C
A
C
T
C
C
A
G
C
C
T
G
G
G
T
G
A
C
A
G
A
G
C
A
A
G
A
5700
C
T
G
T
C
T
C
A
A
A
A
T
A
A
T
A
A
T
A
A
T
A
A
T
A
A
T
A
A
T
A
A
T
A
A
T
A
GTT GGGATGAGAA
5750
ATGTTTCACT AGGATGAACA T
G
G
T
G
G
C
T
C
A
C
T
C
C
T
G
T
A
A
T
A
C
T
A
G
C
A
C
T
T
5800 |
REPEAT
T
G
G
G
A
G
G
C
C
A
A
G
G
C
A
G
G
A
G
G
A
T
C
A
C
C
T
G
A
G
C
C
C
A
G
G
A
G
T
T
C
A
A
G
A
A
C
A
G
C
5850
C
T
G
G
G
C
A
A
T
A
T
G
G
T
G
A
G
A
C
C
C
C
A
T
T
T
C
T
A
T
T
T
A
A
A
A
A
A
A
T
TAAAATAAAT
5900
AAAAAAT
A
A
A
T
G
T
T
T
C
A
C
A
T
T
T
C
A
A
G
T
C
T
T
T
T
C
A
G
A
T
T
T
T
G
G
A
A
T
A
T
T
T
T
5950 |
REPEAT
C
A
T
T
T
T
A
C
T
T
C
C
T
G
G
T
T
G
A
A
C
A
T
C
C
C
A
A
A
T
C
T
A
A
A
A
T
C
T
G
A
A
A
T
A
C
T
C
T
A
6000
G
T
G
A
G
C
A
T
T
T
C
T
T
T
T
G
A
A
T
T
T
C
A
T
G
T
C
A
G
T
A
T
T
C
A
A
A
A
A
G
T
T
T
T
G
G
A
T
T
T
6050
T
G
G
A
G
T
A
T
T
T
C
A
A
A
T
T
T
T
G
G
A
T
T
T
G
G
G
G
G
T
T
T
G
G
G
C
T
G
C
T
C
A
A
C
C
GG
T
A
A
6100 |
REPEAT
T
A
G
C
T
A
A
A
T
T
T
A
G
T
T
G
A
G
C
A
C
T
T
A
C
T
A
T
G
T
A
G
C
A
G
G
C
A
C
A
C
T
T
C
T
A
A
A
A
C
6150
C
A
T
T
C
C
A
A
C
A
T
T
T
A
T
C
A
G
T
C
A
T
T
T
A
A
T
C
T
T
C
A
T
A
A
C
A
A
C
C
C
T
T
T
A
A
A
G
T
C
6200
A
T
T
A
T
T
A
T
T
A
T
T
A
C
T
A
T
T
A
A
A
A
C
G
G
A
A
G
A
G
T
T
C
C
C
T
G
A
G
C
C
C
C
C
G
C
A
G
A
A
6250 |
REPEAT
C
T
T
G
C
T
A
C
A
G
G
G
G
T
G
T
G
G
C
T
T
G
T
T
T
G
C
A
T
G
T
T
C
A
A
A
C
C
C
C
T
T
A
T
G
G
G
A
A
G
6300
G
G
G
A
G
C
A
T
G
C
A
G
A
C
A
G
G
C
A
G
G
T
G
C
A
G
G
A
G
C
C
A
G
G
G
C
T
A
G
T
G
C
T
T
T
T
G
G
G
C
6350
T
C
T
G
G
C
C
C
C
A
C
A
G
T
A
G
G
A
T
C
T
A
G
A
G
G
T
G
T
C
A
T
A
A
A
A
T
T
A
A
T
G
C
T
C
T
T
T
T
A
6400
G
C
A
G
T
T
G
C
T
A
T
T
T
A
C
A
G
A
C
A
G
C
T
A
A
G
T
A
T
T
A
C
T
A
G
T
T
C
A
G
T
G
G
A
G
A
T
T
C
A
6450
G
G
T
G
A
C
A
G
T
C
T
T
T
T
A
C
A
C
C
C
T
G
C
C
C
T
T
T
T
G
G
T
A
C
C
C
A
G
G
T
C
C
T
T
G
T
C
C
A
A
6500
A
G
T
C
C
A
G
G
A
A
G
A
A
T
C
A
G
G
T
C
A
C
A
T
G
G
A
C
T
T
G
A
A
G
G
A
T
G
G
T
G
A
A
T
G
C
G
G
G
T
6550
A
T
T
T
T
A
T
T
G
A
G
T
G
G
T
G
G
A
G
G
T
G
G
A
T
C
T
C
A
G
T
G
G
G
C
T
T
G
C
T
G
G
G
G
A
G
C
T
G
G
6600
A
A
A