Site Genotype1 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype2 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype3 AD-pop ED-pop HD-pop XD-pop Total-pop AD-chi2 ED-chi2 HD-chi2 XD-chi2 Total-chi2 000388 AA 0 0 0 0 0 AG 5 0 0 0 5 GG 21 20 13 17 71 0.294 0.000 0.000 0.000 0.088 000843 AA 25 19 19 21 84 AG 0 1 0 0 1 GG 0 0 0 0 0 0.000 0.013 0.000 0.000 0.003 000850 CC 3 0 0 0 3 CT 2 2 0 4 8 TT 20 18 19 17 74 12.333 0.055 0.000 0.233 12.100 000955 CC 0 0 0 0 0 CT 5 0 0 0 5 TT 21 21 17 20 79 0.294 0.000 0.000 0.000 0.079 001110 CC 0 0 0 0 0 CG 10 7 4 0 21 GG 15 12 15 21 63 1.562 0.969 0.263 0.000 1.714 001135 GG 23 19 20 21 83 GT 1 0 0 0 1 TT 0 0 0 0 0 0.011 0.000 0.000 0.000 0.003 002318 CC 27 21 20 21 89 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.012 0.003 002458 CC 18 12 16 22 68 CT 9 8 4 0 21 TT 0 1 0 0 1 1.080 0.053 0.247 0.000 0.197 002648 -- 0 0 0 0 0 +- 5 0 1 0 6 ++ 19 21 18 17 75 0.324 0.000 0.014 0.000 0.120 003457 -- 0 1 0 0 1 +- 8 7 2 0 17 ++ 15 10 13 17 55 1.019 0.025 0.077 0.000 0.060 003637 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 23 20 17 21 81 0.043 0.000 0.000 0.000 0.012 003680 -- 0 1 0 0 1 +- 9 6 4 0 19 ++ 15 13 12 21 61 1.278 0.078 0.327 0.000 0.126 003738 -- 11 13 12 20 56 +- 6 4 2 0 12 ++ 0 1 0 0 1 0.781 0.720 0.083 0.000 0.147 004099 AA 26 22 21 24 93 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 004502 AA 0 1 0 1 2 AG 4 7 9 11 31 GG 21 11 8 3 43 0.189 0.007 2.203 3.649 1.725 004699 CC 22 20 13 12 67 CG 1 0 0 0 1 GG 0 0 0 0 0 0.011 0.000 0.000 0.000 0.004 005332 GG 10 10 14 19 53 GT 10 5 4 2 21 TT 3 2 0 0 5 0.040 1.016 0.281 0.053 1.953 005668 CC 1 1 0 0 2 CT 10 6 4 0 20 TT 11 12 16 19 58 0.468 0.048 0.247 0.000 0.031 005756 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 23 20 21 20 84 0.011 0.000 0.000 0.000 0.003 005764 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 23 20 21 20 84 0.011 0.000 0.000 0.000 0.003 005862 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 22 18 14 10 64 0.011 0.000 0.000 0.000 0.004 006186 AA 1 1 0 0 2 AC 11 8 3 0 22 CC 11 12 16 21 60 0.741 0.053 0.140 0.000 0.000 006219 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 22 21 21 20 84 0.011 0.000 0.000 0.000 0.003 006297 CC 14 13 17 22 66 CT 8 8 4 0 20 TT 0 1 0 0 1 1.086 0.027 0.233 0.000 0.144 006337 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 23 21 21 23 88 0.000 0.012 0.000 0.000 0.003 006536 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 006637 CC 24 22 22 24 92 CT 3 0 0 0 3 TT 0 0 0 0 0 0.093 0.000 0.000 0.000 0.024 006655 CC 1 1 0 0 2 CT 13 8 5 0 26 TT 13 13 17 24 67 1.080 0.027 0.362 0.000 0.081 006815 AA 24 22 22 24 92 AG 3 0 0 0 3 GG 0 0 0 0 0 0.093 0.000 0.000 0.000 0.024 007158 AA 24 13 18 24 79 AG 3 8 4 0 15 GG 0 1 0 0 1 0.093 0.027 0.220 0.000 0.091 007248 CC 27 22 21 23 93 CT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 007387 AA 24 22 22 24 92 AG 3 0 0 0 3 GG 0 0 0 0 0 0.093 0.000 0.000 0.000 0.024 007403 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 007443 -- 0 0 0 0 0 +- 5 0 1 0 6 ++ 22 22 21 24 89 0.281 0.000 0.012 0.000 0.101 007846 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 008114 AA 0 2 4 2 8 AG 6 9 14 16 45 GG 19 11 1 5 36 0.465 0.007 4.968 3.969 1.332 008454 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 27 22 22 19 90 0.000 0.000 0.000 0.013 0.003 008479 CC 26 22 21 20 89 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 008493 AA 0 0 0 0 0 AG 1 0 0 1 2 GG 26 22 21 19 88 0.010 0.000 0.000 0.013 0.011 008814 CC 0 0 0 0 0 CG 1 0 0 0 1 GG 23 21 22 21 87 0.011 0.000 0.000 0.000 0.003 009011 -- 0 0 0 0 0 +- 2 0 0 0 2 ++ 22 21 21 16 80 0.045 0.000 0.000 0.000 0.012 009036 CC 26 20 21 20 87 CT 0 1 0 0 1 TT 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 009185 -- 0 0 0 0 0 +- 0 0 0 1 1 ++ 23 22 19 22 86 0.000 0.000 0.000 0.011 0.003 009276 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 26 21 22 24 93 0.000 0.012 0.000 0.000 0.003 009282 AA 0 0 0 0 0 AT 2 0 0 0 2 TT 24 22 22 24 92 0.042 0.000 0.000 0.000 0.011 009328 CC 22 12 10 5 49 CT 4 9 11 15 39 TT 0 1 1 4 6 0.181 0.182 0.889 1.526 0.229 009445 CC 25 22 19 24 90 CT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.013 0.000 0.003 009587 -- 0 0 0 0 0 +- 0 1 0 0 1 ++ 25 20 19 24 88 0.000 0.012 0.000 0.000 0.003 009723 CC 24 21 18 20 83 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 009908 CC 17 11 2 5 35 CT 7 9 15 16 47 TT 1 2 4 2 9 0.066 0.007 4.096 3.969 1.417 009934 AA 3 0 0 0 3 AG 3 2 0 4 9 GG 19 20 21 19 79 8.806 0.050 0.000 0.209 10.901 010007 CC 24 22 21 22 89 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 010434 CC 19 21 14 17 71 CT 5 0 1 0 6 TT 0 0 0 0 0 0.324 0.000 0.018 0.000 0.127 010600 CC 5 2 0 0 7 CT 6 8 4 1 19 TT 3 10 10 10 33 0.219 0.045 0.389 0.025 2.377 011058 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 23 21 21 19 84 0.043 0.000 0.000 0.000 0.012 011316 CC 25 20 22 22 89 CT 0 1 0 0 1 TT 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 012575 AA 22 18 18 22 80 AT 2 0 0 0 2 TT 0 0 0 0 0 0.045 0.000 0.000 0.000 0.012 012578 GG 21 19 19 22 81 GT 2 0 0 0 2 TT 0 0 0 0 0 0.048 0.000 0.000 0.000 0.012 012943 AA 2 0 0 0 2 AG 3 1 0 2 6 GG 17 18 20 16 71 5.290 0.014 0.000 0.062 10.208 013094 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 24 21 21 21 87 0.042 0.000 0.000 0.000 0.011 013164 AA 3 0 0 0 3 AG 5 2 0 1 8 GG 18 20 22 20 80 4.663 0.050 0.000 0.012 13.206 013567 -- 25 20 21 19 85 +- 0 0 1 0 1 ++ 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 013802 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 25 21 22 22 90 0.010 0.000 0.000 0.000 0.003 Note: AD: African_Descent ED: European_Descent HD: Hispanic_Descent XD: Asian_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 002648: CAG 003457: C 003680: TGTGCCCA 003738: G 007443: g 009011: G 009185: C 009587: ct 013567: g