************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 fgf6x.phase.inp fgf6x.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST fgf6x.phase.out_freqs : haplotype frequency estimates fgf6x.phase.out_pairs : most likely haplotype pairs for each individual fgf6x.phase.out_recom : estimates of recombination parameters fgf6x.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 90 Number of Loci: 31 Positions of loci: 89 867 971 1150 1234 2095 2177 2312 2975 2978 2981 3056 3202 3207 3342 3393 3501 3541 4494 4611 4673 4821 4946 7470 7706 8918 9059 11662 11839 12125 14775 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file fgf6x.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 ATTCCTGGGGGAAGCTGGTGGCGTACACGGC 2.000000 2 ATTCCTGGGGGAAGTTGGTGGCGCGCATGGT 3.000000 3 ATTCCTGGGGGAAGTTGGTGGCGCGTACAGT 1.000000 4 ATTCCTGGGGGAAGTTGGTGGCGTACGCAGT 32.000000 5 ATTCCTGGGGGAAGTTGGTGGCGTACGCAAT 21.000000 6 ATTCCTGGGGGAGACCAACGGCGCACGCAGT 1.000000 7 ATTCCTGGGGGAGACCAACGGCGCGCACGGC 3.000000 8 ATTCCTGGGGGAGACCAACGGCGCGCATGGT 1.000000 9 ATTCCTGGGGGAGACCAACGGCGCGCGCAGT 10.000000 10 ATTCCTGGTTTGAGCCAATGGCGCGCGCAGT 5.000000 11 ATTCCTGGTTTGAGCCGGTGGCGTACGCAAT 6.000000 12 ATTCCTGGTTTGAGCCGGTACAACGCATGGT 1.000000 13 ATTCCTGATTTGGACCAATGGCGCGCACAGC 1.000000 14 ATTCCTGATTTGGACCAATGGCGCGTATGGT 1.000000 15 ATTCCTCGGGGAAGTTGGTGGCGCGCACGGC 1.000000 16 ATTCCTCGGGGAGACCGGTACAACGCATGGT 1.000000 17 ATTCCTCGGGGAGATTGGTGGCGCGCACGGT 2.000000 18 ATTCCTCAGGGAGACCGGTACAACGCATGGT 2.000000 19 ATTCCCGATTTGAGCCGGTGGCGCGCACAGC 1.000000 20 ATTCTTGGGGGAGACCAACGGCGCGCATGGT 2.000000 21 ATTCTTGGGGGAGACCAACGGCGCGTACAGT 1.000000 22 ATTCTTGGGGGAGACCAACGGCGCGTATGGT 9.000000 23 ATTCTTGGGGGAGACCAACGGCGCGTGCAAT 1.000000 24 ATTCTTGGGGGAGACCAACGGCGTACGCAAT 1.000000 25 ATTCTTGGTTTGAGCCGGTACAACGCATGGT 2.000000 26 ATTCTCGATTTGGACCAATGGCGCGCACAGC 1.000000 27 ATCTTTGGGGGAAGTTGGTGGCGTACGCAGT 2.000000 28 ATCTTTGGGGGAAGTTGGTGGCGTACGCAAT 7.000000 29 ATCTTCGGTTTGAGCCGGTACAACGCATGGT 1.000000 30 ATCTTCGATTTGAGCCAATGGCGCGCGCAGT 1.000000 31 ATCTTCGATTTGAGCCGGTACAACGCATGGT 14.000000 32 AGTCCTGGGGGAAGCTGGTGGCGTACACAGT 1.000000 33 AGTCCTGGGGGAAGTTGGTGGCGCGCACGGC 1.000000 34 AGTCCTGGTTTGAGCCGGTACAACGCATGGT 1.000000 35 AGTCCTCAGGGAAGCCGGTACAACGCATGGC 1.000000 36 AGTCCTCAGGGAGACCGGTACAACGCATGGT 3.000000 37 AGTCCTCATTTGGACCAATGCAACGCACGGT 2.000000 38 GTTCCTGGGGGAAGTTGGTGGCGTACGCAGT 30.000000 39 GTTCCTGGGGGAAGTTGGTGGCGTACGCAAT 1.000000 40 GTTCCTGGGGGAGACCAACGGCGCGCGCAGT 1.000000 41 GTTCCTGGGGGAGACCAACGGCGCGCGTGGT 1.000000 42 GTTCCTGATTTGAGCCGGTACAACGCATGGT 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY P001: (9,21) P002: (20,38) P003: (2,17) P004: (4,19) P005: (11,28) P006: (12,38) P007: (27,28) P008: (11,22) P009: (5,28) P010: (4,9) P011: (31,33) P012: (31,39) P013: (22,32) P014: (5,5) P015: (4,4) P016: (4,6) P017: (4,10) P018: (1,37) P019: (4,5) P020: (5,38) P021: (1,9) P022: (4,22) P023: (4,22) P024: (5,38) P025: (8,29) P026: (24,41) P027: (3,4) P028: (28,28) P029: (10,30) P030: (5,38) P031: (31,31) P032: (5,34) P033: (4,11) P034: (22,38) P035: (38,38) P036: (4,5) P037: (22,38) P038: (36,36) P039: (9,38) P040: (4,38) P041: (4,7) P042: (10,37) P043: (5,31) P044: (4,4) P045: (5,38) P046: (4,38) P047: (4,20) P048: (5,31) P049: (22,31) P050: (26,36) P051: (38,38) P052: (4,31) P053: (11,38) P054: (4,31) P055: (4,38) P056: (5,38) P057: (13,38) P058: (22,25) P059: (15,14) P060: (2,31) P061: (4,18) P062: (5,5) P063: (5,22) P064: (7,17) P065: (4,11) P066: (38,38) P067: (4,31) P068: (4,4) P069: (4,38) P070: (31,38) P071: (5,9) P072: (9,38) P073: (9,23) P074: (9,9) P075: (4,38) P076: (4,9) P077: (5,38) P078: (25,31) P079: (28,40) P080: (10,10) P081: (2,5) P082: (27,38) P083: (5,28) P084: (5,38) P085: (11,42) P086: (4,31) P087: (4,38) P088: (7,16) P089: (18,35) P090: (4,38) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 P001 A T T C C T G G G G G A G A C C A A C G G C G C [G] C G C A G T A T T C T T G G G G G A G A C C A A C G G C G C G [T] A C A G T 0 P002 A T T C T T G G G G G A G A C C A A C G G C G C G C A T G G T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P003 A T T C C T G G G G G A A G T T G G T G G C G C G C A T G G T A T T C C T C G G G G A G A T T G G T G G C G C G C A C G G T 0 P004 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C C G A T T T G A [G] C C [G] G T G G C G C G C A C A G C 0 P005 A T T C C T G G T T T G A G C C G G T G G C G T A C G C A A T A T C T T T G G G G G A A G T T G G T G G C G T A C G C A A T 0 P006 (A) T T C C T G G T T T G A G C C G G T A C A A C G C A T G G T (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P007 A T C T T T G G G G G A A G T T G G T G G C G T A C G C A G T A T C T T T G G G G G A A G T T G G T G G C G T A C G C A A T 0 P008 A T T C C T G G T T T G A G C C G G T G G C G T A C G C A A T A T T C T T G G G G G A G A C C A A C G G C G C G [T] A T G G T 0 P009 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T A T C T T T G G G G G A A G T T G G T G G C G T A C G C A A T 0 P010 [A] T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T G G G G G A G A C C A A C G G C G C [G] C G C A G T 0 P011 A (T) C T T C G A T T T G A G C C G G T A C A A C G C A T G G T A (G) T C C T G G G G G A A G T T G G T G G C G C G C A C G G C 0 P012 (A) T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T 0 P013 A (T) T C T T G G G G G A G A C C A A C G G C G C G T A (T) (G) G T A (G) T C C T G G G G G A A G C T G G T G G C G T A C A (C) (A) G T 0 P014 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T 0 P015 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P016 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T G G G G G A G A C C A A C G G C G C A C G C A G T 0 P017 [A] T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T G G T T T G A G C C A A T G G C G C G C G C A G T 0 P018 A T T C C T G G G G G A A G C T G G T G G C G T A C A C G G C A G T C C T C A T T T G G A C C A A T G C A A C G C A C G G T 0 P019 [A] T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T 0 P020 (A) T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P021 A T T C C T G G G G G A A G C T G G T G G C G T A C A C G G C A T T C C T G G G G G A G A C C A A C G G C G C G C G C A G T 0 P022 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C T T G G G G G A G A C C A A C G G C G C G [T] A T G G T 0 P023 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C T T G G G G G A G A C C A A C G G C G C G T A T G G T 0 P024 (A) T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P025 A T (T) (C) (C) (T) G G G G G A G A C C A A C G G C G C G C A T G G T A T (C) (T) (T) (C) G G T T T G A G C C G G T A C A A C G C A T G G T 0 P026 (A) T T C (T) T G G G G G A G A C C A A C G G C G T A C G C A A T (G) T T C (C) T G G G G G A G A C C A A C G G C G C G C G T G G T 0 P027 A T T C C T G G G G G A A G T T G G T G G C G C G T A C A G T A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P028 A T C T T T G G G G G A A G T T G G T G G C G T A C G C A A T A T C T T T G G G G G A A G T T G G T G G C G T A C G C A A T 0 P029 A T T C C T G G T T T G A G C C A A T G G C G C G C G C A G T A T C T T C G A T T T G A G C C A A T G G C G C G C G C A G T 0 P030 (A) T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P031 A T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T A T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T 0 P032 A (T) T C C T G G G G G A A G T T G G T G G C G T A C G C A A T A (G) T C C T G G T T T G A G C C G G T A C A A C G C A T G G T 0 P033 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T G G T T T G A G C C G G T G G C G T A C G C A A T 0 P034 A T T C T T G G G G G A G A C C A A C G G C G C G T A T G G T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P035 G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P036 [A] T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T 0 P037 A T T C T T G G G G G A G A C C A A C G G C G C G T A T G G T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P038 A G T C C T C A G G G A G A C C G G T A C A A C G C A T G G T A G T C C T C A G G G A G A C C G G T A C A A C G C A T G G T 0 P039 (A) T T C C T G G G G G A G A C C A A C G G C G C G C G C A G T (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P040 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P041 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T G G G G G A G A C C A A C G G C G C G C A C G G C 0 P042 A T T C C T G G T T T G A G C C A A T G G C G C G C G C A G T A G T C C T C A T T T G G A C C A A T G C A A C G C A C G G T 0 P043 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T A T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T 0 P044 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P045 (A) T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P046 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P047 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C T T G G G G G A G A C C A A C G G C G C G C A T G G T 0 P048 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T A T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T 0 P049 A T T C T T G G G G G A G A C C A A C G G C G C G [T] A T G G T A T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T 0 P050 A (T) T C (T) (C) (G) A (T) (T) (T) (G) [G] A C C A A T G G C G C G C A C A G C A (G) T C (C) (T) (C) A (G) (G) (G) (A) [G] [A] C C G G T A C A A C G C A T G G T 0 P051 G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P052 [A] T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T 0 P053 (A) T T C C T G G T T T G A G C C G G T G G C G T A C G C A A T (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P054 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T 0 P055 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A [G] T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P056 (A) T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P057 (A) T T C C T G A T T T G G A C C A A T G G C G C G C A C A G C (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P058 A T T C T T G G G G G A G A C C A A C G G C G C G T A T G G T A T T C T T G G T T T G A G C C G G T A C A A C G C A T G G T 0 P059 A T T C C T (C) (G) G G G A (A) (G) T T G G T G G C G C G (C) A (C) G G (C) A T T C C T (G) (A) T T T G (G) (A) C C A A T G G C G C G (T) A (T) G G (T) 0 P060 A T T C C T G G G G G A A G T T G G T G G C G C G C A T G G T A T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T 0 P061 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T C A G G G A G A C C G G T A C A A C G C A T G G T 0 P062 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T 0 P063 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T A T T C T T G G G G G A G A C C A A C G G C G C G T A T G G T 0 P064 A T T C C T G G G G G A G A C C A A C G G C G C G C A C G G C A T T C C T C G G G G A G A T T G G T G G C G C G C A C G G T 0 P065 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T G G T T T G A G C C G G T G G C G T A C G C A A T 0 P066 G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P067 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T 0 P068 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P069 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P070 A T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P071 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T A T T C C T G G G G G A G A C C A A C G G C G C G C G C A G T 0 P072 (A) T T C C T G G G G G A G A C C A A C G G C G C G C G C A G T (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P073 A T T C C T G G G G G A G A C C A A C G G C G C [G] C G C A G T A T T C T T G G G G G A G A C C A A C G G C G C G T G C A A T 0 P074 [A] T T C C T G G G G G A G A C C A A C G G C G C G C G C A G T A T T C C T G G G G G A G A C C A A C G G C G C G C G C A G T 0 P075 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T [G] T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P076 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T T C C T G G G G G A G A C C A A C G G C G C G C G C A G T 0 P077 (A) T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P078 A T T C T T G G T T T G A G C C G G T A C A A C G C A T G G T A T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T 0 P079 A T C T T T G G G G G A A G T T G G T G G C G T A C G C A A T G T T C C T G G G G G A G A C C A A C G G C G C G C G C A G T 0 P080 A T T C C T G G T T T G A G C C A A T G G C G C G C G C A G T A T T C C T G G T T T G A G C C A A T G G C G C G C G C A G T 0 P081 A T T C C T G G G G G A A G T T G G T G G C G C G C A T G G T A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T 0 P082 A T C T T T G G G G G A A G T T G G T G G C G T A C G C A G T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P083 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T A T C T T T G G G G G A A G T T G G T G G C G T A C G C A A T 0 P084 (A) T T C C T G G G G G A A G T T G G T G G C G T A C G C A A T (G) T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P085 (A) T T C C T G G T T T G A G C C G G T G G C G T A C G C A A T (G) T T C C T G A T T T G A G C C G G T A C A A C G C A T G G T 0 P086 [A] T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T A T C T T C G A T T T G A G C C G G T A C A A C G C A T G G T 0 P087 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T G T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T 0 P088 A T T C C T G G G G G A G A C C A A C G G C G C G C A C G G C A T T C C T C G G G G A G A C C G G T A C A A C G C A T G G T 0 P089 A (T) T C C T C A G G G A G A C C G G T A C A A C G C A [T] G G (T) A (G) T C C T C A G G G A A G C C G G T A C A A C G C A [T] G G (C) 0 P090 A T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T [G] T T C C T G G G G G A A G T T G G T G G C G T A C G C A G T END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 P001 = = = = C = = = = = = = ? ? = = = = = = = = = = ? ? G = = = = = = = = T = = = = = = = ? ? = = = = = = = = = = ? ? A = = = = 0 P002 A = = = T = = = = = = = ? ? ? ? ? ? C = = = = C ? = ? T G = = G = = = C = = = = = = = ? ? ? ? ? ? T = = = = T ? = ? C A = = 0 P003 = = = = = = G = = = = = A G = = = = = = = = = ? ? = = T = = = = = = = = = C = = = = = G A = = = = = = = = = ? ? = = C = = = 0 P004 = = = = = T = G G G G A ? ? ? ? ? = = = = = = T A = G = = = T = = = = = C = A T T T G ? ? ? ? ? = = = = = = C G = A = = = C 0 P005 = = T C C = = = T T T G ? ? ? ? ? ? = = = = = = ? = = = = = = = = C T T = = = G G G A ? ? ? ? ? ? = = = = = = ? = = = = = = 0 P006 (A) = = = = = = = T T T G ? ? ? ? = = = A C A A C G = A T G = = (G) = = = = = = = G G G A ? ? ? ? = = = G G C G T A = G C A = = 0 P007 = = = = = = = = = = = = ? ? ? ? ? = = = = = = = ? = = = = G = = = = = = = = = = = = = ? ? ? ? ? = = = = = = = ? = = = = A = 0 P008 ? = = = C = = = T T T G ? ? ? ? ? ? T = = = = T ? ? ? C A A = ? = = = T = = = G G G A ? ? ? ? ? ? C = = = = C ? ? ? T G G = 0 P009 = = T C C = = = = = = = = = = = = = = = = = = = = = = = = = = = = C T T = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P010 ? = = = = = = = = = = = A G T T G G T = = = = T ? = = = = = = ? = = = = = = = = = = = G A C C A A C = = = = C ? = = = = = = 0 P011 ? (T) C T T C = A T T T G = = C C = = = A C A A = ? ? ? T = = T ? (G) T C C T = G G G G A = = T T = = = G G C G = ? ? ? C = = C 0 P012 (A) = C T T C = A T T T G = = C C = = = A C A A C G = A T G G = (G) = T C C T = G G G G A = = T T = = = G G C G T A = G C A A = 0 P013 ? (T) = = T = = = = = = = G A = C A A C = = = = C G T = (T) (G) = = ? (G) = = C = = = = = = = A G = T G G T = = = = T A C = (C) (A) = = 0 P014 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P015 = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = 0 P016 = = = = = = = = = = = = A G T T G G T = = = = T = = = = = = = = = = = = = = = = = = = G A C C A A C = = = = C = = = = = = = 0 P017 ? = = = = = = = G G G A = = T T G G = = = ? ? T ? = = ? ? ? = ? = = = = = = = T T T G = = C C A A = = = ? ? C ? = = ? ? ? = 0 P018 ? T = = = = G G G G G A A G = T G G = = G C G T A ? = = = = C ? G = = = = C A T T T G G A = C A A = = C A A C G ? = = = = T 0 P019 ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = 0 P020 (A) = = = = = = = = = = = = = = = = = = = = = = = ? = = = = A = (G) = = = = = = = = = = = = = = = = = = = = = = = ? = = = = G = 0 P021 = = = = = = = = = = = = A G = T G G T = = = = T A = A = G = C = = = = = = = = = = = = G A = C A A C = = = = C G = G = A = T 0 P022 = = = = C = = = = = = = A G T T G G T = = = = ? ? ? G C A = = = = = = T = = = = = = = G A C C A A C = = = = ? ? ? A T G = = 0 P023 = = = = C = = = = = = = A G T T G G T = = = = T ? C G C A = = = = = = T = = = = = = = G A C C A A C = = = = C ? T A T G = = 0 P024 (A) = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = A = (G) = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = G = 0 P025 = = (T) (C) (C) (T) = = G G G A G A = = A A C G G C G = ? = = = = = = = = (C) (T) (T) (C) = = T T T G A G = = G G T A C A A = ? = = = = = = 0 P026 (A) = = = (T) = = = = = = = = = = = = = = = = = = T A = = C A A = (G) = = = (C) = = = = = = = = = = = = = = = = = = C G = = T G G = 0 P027 = = = = = = = = = = = = = = = = = = = = = = = C G T A = = = = = = = = = = = = = = = = = = = = = = = = = = = T A C G = = = = 0 P028 = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = 0 P029 = = T C C T = G = = = = = = = = = = = = = = = = = = = = = = = = = C T T C = A = = = = = = = = = = = = = = = = = = = = = = = 0 P030 (A) = = = = = = = = = = = = = = = = = = = = = = = ? = = = = A = (G) = = = = = = = = = = = = = = = = = = = = = = = ? = = = = G = 0 P031 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P032 ? (T) = = = = = = G G G A = = T T = = = G G C G T A = G C A A = ? (G) = = = = = = T T T G = = C C = = = A C A A C G = A T G G = 0 P033 = = = = = = = = G G G A ? ? T T = = = = = = = = ? = = = = G = = = = = = = = = T T T G ? ? C C = = = = = = = = ? = = = = A = 0 P034 A = = = T = = = = = = = G A C C A A C = = = = C G T A T G = = G = = = C = = = = = = = A G T T G G T = = = = T A C G C A = = 0 P035 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P036 ? = = = = ? ? ? = = = = = = = = = = = = = = = = ? = = = = G = ? = = = = ? ? ? = = = = = = = = = = = = = = = = ? = = = = A = 0 P037 A = = = T = = = = = = = G A C C A A C = = = = C G T A T G = = G = = = C = = = = = = = A G T T G G T = = = = T A C G C A = = 0 P038 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P039 (A) = = = = = = = = = = = G A C C A A C = = = = C G = = = = = = (G) = = = = = = = = = = = A G T T G G T = = = = T A = = = = = = 0 P040 A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P041 = = = = = = = = = = = = A G T T G G T = = = = T A = G = A = T = = = = = = = = = = = = G A C C A A C = = = = C G = A = G = C 0 P042 ? T = = = = G G = = = = A G = = = = = = G C G = = = G = A = = ? G = = = = C A = = = = G A = = = = = = C A A = = = A = G = = 0 P043 = = T C C T = G G G G A = = T T = = = G G C G T A = G C A A = = = C T T C = A T T T G = = C C = = = A C A A C G = A T G G = 0 P044 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P045 (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = 0 P046 A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P047 = = = = C = = = = = = = A G T T G G T = = = = T A = G C A = = = = = = T = = = = = = = G A C C A A C = = = = C G = A T G = = 0 P048 = = T C C T = G G G G A = = T T = = = G G C G T A = G C A A = = = C T T C = A T T T G = = C C = = = A C A A C G = A T G G = 0 P049 = = T C = T = G G G G A G A = = A A C G G C G = ? ? = = = = = = = C T = C = A T T T G A G = = G G T A C A A = ? ? = = = = = 0 P050 ? (T) = = (T) (C) (G) = (T) (T) (T) (G) ? ? = = A A = G G C G = = = = C A = C ? (G) = = (C) (T) (C) = (G) (G) (G) (A) ? ? = = G G = A C A A = = = = T G = T 0 P051 = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = 0 P052 ? = T C C T = G G G G A = = T T = = = G G C G T ? = G ? ? ? = ? = C T T C = A T T T G = = C C = = = A C A A C ? = A ? ? ? = 0 P053 (A) = = = = = = = T T T G = = C C = = = = = = = = = = = = = A = (G) = = = = = = = G G G A = = T T = = = = = = = = = = = = = G = 0 P054 = = T C C T = G G G G A = = T T = = = G G C G T A = G C A = = = = C T T C = A T T T G = = C C = = = A C A A C G = A T G = = 0 P055 A = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = G = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = 0 P056 (A) = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = A = (G) = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = G = 0 P057 (A) = = = = = = A T T T G G A C C A A = = = = = C G = A = = = C (G) = = = = = = G G G G A A G T T G G = = = = = T A = G = = = T 0 P058 ? = = = = = = = G G G A G A = = A A C G G C G = = T = = = = = ? = = = = = = = T T T G A G = = G G T A C A A = = C = = = = = 0 P059 = = = = = = (C) (G) G G G A (A) (G) T T G G = = = = = = ? (C) = (C) = = (C) = = = = = = (G) (A) T T T G (G) (A) C C A A = = = = = = ? (T) = (T) = = (T) 0 P060 = = T C C T = G G G G A = = T T = = = G G C G = = = = = = = = = = C T T C = A T T T G = = C C = = = A C A A = = = = = = = = 0 P061 = = = = = = G G = = = = A G T T = = = G G C G T A = G C A = = = = = = = = C A = = = = G A C C = = = A C A A C G = A T G = = 0 P062 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P063 = = = = C = = = = = = = A G T T G G T = = = = T A C G C A A = = = = = T = = = = = = = G A C C A A C = = = = C G T A T G G = 0 P064 = = = = = = G = = = = = = = C C A A C = = = = = = ? ? = = = C = = = = = = C = = = = = = = T T G G T = = = = = = ? ? = = = T 0 P065 = = = = = = = = G G G A = = T T = = = = = ? = = = = = = = G = = = = = = = = = T T T G = = C C = = = = = ? = = = = = = = A = 0 P066 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P067 = = T C C T = G G G G A = = T T = = = G G C G T A = G C A = = = = C T T C = A T T T G = = C C = = = A C A A C G = A T G = = 0 P068 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P069 A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P070 A = C T T C = A T T T G = = C C = = = A C A A C G = A T G = = G = T C C T = G G G G A = = T T = = = G G C G T A = G C A = = 0 P071 = = = = = = = = = = = = A G T T G G T = = ? = T A = = = = A = = = = = = = = = = = = = G A C C A A C = = ? = C G = = = = G = 0 P072 (A) = = = = = = = = = = = G A C C A A C = = = = C G = = = = = = (G) = = = = = = = = = = = A G T T G G T = = = = T A = = = = = = 0 P073 ? = = = C = = = = = = = = = = = = = = = = = = = ? C = = = G = ? = = = T = = = = = = = = = = = = = = = = = = = ? T = = = A = 0 P074 ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P075 ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P076 = = = = = = = = = = = = A G T T G G T = = = = T A = = = = = = = = = = = = = = = = = = G A C C A A C = = = = C G = = = = = = 0 P077 (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = 0 P078 = = T C = T = G = = = = = = = = = = = = = = = = = ? ? = = = = = = C T = C = A = = = = = = = = = = = = = = = = = ? ? = = = = 0 P079 A = C T T = = ? = = = = A G T T G G T = = = = T A = = = = A = G = T C C = = ? = = = = G A C C A A C = = = = C G = = = = G = 0 P080 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P081 = = = = = = = = = = = = = = = = = = = = = = = C G = A T G G = = = = = = = = = = = = = = = = = = = = = = = = T A = G C A A = 0 P082 A = C T T = = = = = = = = = = = = = = = = = = = = = = = = = = G = T C C = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P083 = = T C C = = = = = = = = = = = = = = = = = = = = = = = = = = = = C T T = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P084 (A) = = = = = = = = = = = = = = = = = = = ? = = = = = = = = A = (G) = = = = = = = = = = = = = = = = = = = ? = = = = = = = = G = 0 P085 (A) = = = = = = G = = = = = = = = = = = G G C G T A = G C A A = (G) = = = = = = A = = = = = = = = = = = A C A A C G = A T G G = 0 P086 ? = T C C T = G G G G A = = T T = = = G G C G T A = G C A = = ? = C T T C = A T T T G = = C C = = = A C A A C G = A T G = = 0 P087 A = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = 0 P088 = = = = = = G = = = = = = = = = A A C G G C G = = = = C = = C = = = = = = C = = = = = = = = = G G T A C A A = = = = T = = T 0 P089 ? (T) = = = = = = = = = = G A = = = = = = = = = = = = = ? = = (T) ? (G) = = = = = = = = = = A G = = = = = = = = = = = = = ? = = (C) 0 P090 ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = = = = 0.99 = = = = = = = ? ? = = = = = = = = = = ? ? 1.00 = = = = 0.95 = = = 1.00 = = = = = = = ? ? ? ? ? ? 1.00 = = = = 1.00 ? = ? 1.00 1.00 = = = = = = = = 1.00 = = = = = 1.00 1.00 = = = = = = = = = ? ? = = 1.00 = = = = = = = = 0.99 = 0.99 1.00 1.00 1.00 1.00 ? ? ? ? ? = = = = = = 0.95 0.95 = 0.95 = = = 0.95 = = 0.98 0.98 0.98 = = = 1.00 1.00 1.00 1.00 ? ? ? ? ? ? = = = = = = ? = = = = = = 0.72 = = = = = = = 1.00 1.00 1.00 1.00 ? ? ? ? = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = ? ? ? ? ? = = = = = = = ? = = = = 1.00 = ? = = = 1.00 = = = 1.00 1.00 1.00 1.00 ? ? ? ? ? ? 1.00 = = = = 1.00 ? ? ? 1.00 1.00 1.00 = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 ? = = = = = = ? 0.79 0.97 0.97 0.97 0.98 = 0.98 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 = ? ? ? 0.97 = = 0.97 0.90 = 0.98 0.98 0.98 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 0.97 = ? 0.69 = = 1.00 = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = 0.89 0.89 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 = = = = = = = ? = = = = = = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = ? ? 1.00 ? = = ? ? ? = ? 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 ? = = = = 1.00 ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 0.81 = = = = = = = = = = = = = = = = = = = = = = = ? = = = = 1.00 = = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = 1.00 = 0.99 = 0.99 = = = = 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = ? ? ? 1.00 1.00 1.00 = = = = = = 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 ? 1.00 1.00 1.00 1.00 = = 0.81 = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = 1.00 = = = 0.65 0.65 0.65 0.66 = = 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = ? = = = = = = 0.80 = = = 0.83 = = = = = = = = = = = = = = = = = = 0.99 0.99 = = 0.97 0.97 0.97 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = 0.82 = = = = = = = = = = = = = = = = = = = = = = = ? = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 0.64 = = = = = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 0.99 = = = = = = = = = 1.00 1.00 1.00 1.00 ? ? 1.00 1.00 = = = = = = = = ? = = = = 0.96 = 0.97 = = = 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = ? ? ? = = = = = = = = = = = = = = = = ? = = = = 1.00 = 0.97 = = = 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.78 = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = 0.99 = 0.99 = 0.99 ? 1.00 = = = = 1.00 1.00 = = = = 1.00 1.00 = = = = = = 1.00 1.00 1.00 = = = 1.00 = 1.00 = = = = 0.99 0.99 0.99 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 0.99 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.81 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.99 = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = 1.00 0.99 0.99 = = = = 0.99 0.99 0.99 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 0.99 = = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = ? ? = = = = = ? 0.71 = = 0.73 0.73 0.73 = 0.73 0.73 0.73 0.73 ? ? = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = 1.00 = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = ? = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 ? = 1.00 ? ? ? = 0.89 = = = = = = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = = = = = = = = = = 0.99 = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = 0.81 = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = 1.00 = 0.67 = = = = = = 0.94 0.93 0.93 0.93 0.93 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = 1.00 1.00 = 1.00 = = = 1.00 ? = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = = = = = = = = = 0.52 0.82 1.00 1.00 1.00 1.00 0.74 0.74 1.00 1.00 1.00 1.00 = = = = = = ? 0.71 = 0.70 = = 0.70 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = 1.00 0.99 = = = = 1.00 1.00 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 0.99 0.99 0.99 0.99 = = = = = = = 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = ? ? = = = 0.99 = = = = = = = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = = ? = = = = = = = 0.96 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.98 = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = ? = 1.00 1.00 = = = = 0.97 = 0.77 = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = = = ? = = = 1.00 = = = = = = = = = = = = = = = = = = = ? 0.99 = = = 0.97 = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = = = 0.81 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 = 1.00 = 1.00 = = = = = = = = = = = = = = = = = ? ? = = = = 0.92 = 0.92 0.92 0.92 = = ? = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = 0.97 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 0.99 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = 0.82 = = = = = = = = = = = = = = = = = = = ? = = = = = = = = 1.00 = 0.85 = = = = = = 0.96 = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = ? = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = 0.97 = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 0.98 = = 0.98 ? 0.52 = = = = = = = = = = 0.99 0.99 = = = = = = = = = = = = = ? = = 0.53 ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END PHASEPROBS